StarDist - Object Detection with Star-convex Shapes

Cell Detection with Star-convex Polygons

Medical Image Computing and Computer-Assisted Intervention

Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy

Workshop on Applications of Computer Vision

A shift in lung macrophage composition is associated with COVID-19 severity and recovery

Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates

Computational and structural biotechnology journal

Bubble identification from images with machine learning methods

Non-invasive scoring of cellular atypia in keratinocyte cancers in 3D LC-OCT images using Deep Learning

StarDist Image Segmentation Improves Circulating Tumor Cell Detection

NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale

Nuclei Instance Segmentation and Classification in Histopathology Images with Stardist

2022 IEEE International Symposium on Biomedical Imaging Challenges (ISBIC)

Different approaches to Imaging Mass Cytometry data analysis


SMPL-X

Capturing and Inferring Dense Full-Body Human-Scene Contact

EgoBody: Human Body Shape and Motion of Interacting People from Head-Mounted Devices

Human-Aware Object Placement for Visual Environment Reconstruction

Representation Learning of Vertex Heatmaps for 3D Human Mesh Reconstruction From Multi-View Images

3D Shape Sequence of Human Comparison and Classification using Current and Varifolds


Citation Style Language schema

Open collaborative writing with Manubot

Influence of Inflammation on Cytochromes P450 Activity in Adults: A Systematic Review of the Literature

Okula Bağlılık Ölçeğinin Türkçeye Uyarlanması

Abant İzzet Baysal Üniversitesi Eğitim Fakültesi Dergisi

Tweets and Crumpets: Examining U.K. and U.S. Regulation of Athlete Endorsements and Social Media Marketing

Perceptions of International Student Mobility: A Qualitative Case Study of Pakistan

Journal of Education and Educational Development

Islamic Populism Politics and Its Threat to Indonesian Democracy

Revitalisasi Penerapan Qanun Nomor 6 Tahun 2014 tentang Hukum Jinayat di Kota Langsa Aceh

Computers, Internet and Smartphone Attitudes Among Romanian University Students

European Journal of Multidisciplinary Studies

Discovering the mechanisms of abstraction in the performance of work teams in children to solve computational problems

An Examination of the Month-of-the-year Effect at Damascus Securities Exchange

International Journal of Economics and Financial Issues


A machine learning library for detecting anomalies in signals.

Detecting Spacecraft Anomalies Using LSTMs and Nonparametric Dynamic Thresholding

TadGAN: Time Series Anomaly Detection Using Generative Adversarial Networks

The Machine Learning Bazaar: Harnessing the ML Ecosystem for Effective System Development

SIGMOD'20: PROCEEDINGS OF THE 2020 ACM SIGMOD INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA

Graph-Augmented Normalizing Flows for Anomaly Detection of Multiple Time Series

AER: Auto-Encoder with Regression for Time Series Anomaly Detection

Sintel: A Machine Learning Framework to Extract Insights from Signals

Proceedings of the 2022 International Conference on Management of Data

A Survey of Time Series Anomaly Detection Methods in the AIOps Domain

Making the End-User a Priority in Benchmarking: OrionBench for Unsupervised Time Series Anomaly Detection


Survival Analysis and Visualization

Integrative Tumor and Immune Cell Multi-omic Analyses Predict Response to Immune Checkpoint Blockade in Melanoma

Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

PET/CT Imaging of Activated Cancer-Associated Fibroblasts Predict Response to PD-1 Blockade in Gastric Cancer Patients

DNA methylation derived systemic inflammation indices are associated with head and neck cancer development and survival

Impact TMPRSS2-ERG Molecular Subtype on Prostate Cancer Recurrence

DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and immunotherapy response

Multidimensional Mutational Profiling of the Indian HNSCC Sub-Population Provides IRAK1, a Novel Driver Gene and Potential Druggable Target

Whole-genome sequencing of extrachromosomal circular DNA of cerebrospinal fluid of medulloblastoma

Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC)


Python parser for bash

NL2Bash: A Corpus and Semantic Parser for Natural Language Interface to the Linux Operating System

Executable formal semantics for the POSIX shell

Shell Language Processing: Unix command parsing for Machine Learning

NL2CMD: An Updated Workflow for Natural Language to Bash Commands Translation

DONAPI: Malicious NPM Packages Detector using Behavior Sequence
  Knowledge Mapping


Open neural machine translation models and web services

OPUS-MT – Building open translation services for the World

European Association for Machine Translation Conferences/Workshops

XL-WSD: An Extra-Large and Cross-Lingual Evaluation Framework for Word Sense Disambiguation

Zenodo (CERN European Organization for Nuclear Research)

XL-WiC: A Multilingual Benchmark for Evaluating Semantic Contextualization

Democratizing neural machine translation with OPUS-MT

Majority Voting with Bidirectional Pre-translation For Bitext Retrieval

The FISKMÖ Project: Resources and Tools for Finnish-Swedish Machine Translation and Cross-Linguistic Research

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

Lingua Custodia's participation at the WMT 2021 Machine Translation using Terminologies shared task

Sentiment-based Candidate Selection for NMT

adaptNMT: an open-source, language-agnostic development environment for neural machine translation


Llama中文社区，Llama3在线体验和微调模型已开放，实时汇总最新Llama3学习资料，已将所有代码更新适配Llama3，构建最好的中文Llama大模型，完全开源可商用

LLaMA: Open and Efficient Foundation Language Models

Llama 2: Open Foundation and Fine-Tuned Chat Models

LoRA: Low-Rank Adaptation of Large Language Models

Knowledgeable Preference Alignment for LLMs in Domain-specific Question Answering

ChatRadio-Valuer: A Chat Large Language Model for Generalizable Radiology Report Generation Based on Multi-institution and Multi-system Data

Assistive Large Language Model Agents for Socially-Aware Negotiation
  Dialogues

UniOQA: A Unified Framework for Knowledge Graph Question Answering with
  Large Language Models


Toolbox for testing if a probability distribution fits a power law

powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions

Implicit Self-Regularization in Deep Neural Networks: Evidence from Random Matrix Theory and Implications for Learning

Traditional and Heavy-Tailed Self Regularization in Neural Network Models

Automated assembly of molecular mechanisms at scale from text mining and curated databases

Hunting for Radio Emission from the Intermittent Pulsar J1107-5907 at Low Frequencies

Dense gas in a giant molecular filament

Altered Weibull Degree Distribution in Resting-State Functional Brain Networks Is Associated With Cognitive Decline in Mild Cognitive Impairment

Temporal Networks Based on Human Mobility Models: A Comparative Analysis With Real-World Networks

Heavy-tailed distributions of confirmed COVID-19 cases and deaths in spatiotemporal space

Size Distributions Reveal Regime Transition of Lake Systems Under Different Dominant Driving Forces


LangKit: An open-source toolkit for monitoring Large Language Models (LLMs).  Extracts signals from prompts & responses, ensuring safety & security.  Features include text quality, relevance metrics, & sentiment analysis.  A comprehensive tool for LLM observability.

Towards Auditing Large Language Models: Improving Text-based Stereotype Detection

SPML: A DSL for Defending Language Models Against Prompt Attacks


Differentiate all the things!

TorchMD: A Deep Learning Framework for Molecular Simulations

Journal of chemical theory and computation

Differentiable simulation to develop molecular dynamics force fields for disordered proteins


Home Performance XML


Code and documents of LongLoRA and LongAlpaca (ICLR 2024 Oral)

LongLoRA: Efficient Fine-tuning of Long-Context Large Language Models

AcademicGPT: Empowering Academic Research

3D-RPE: Enhancing Long-Context Modeling Through 3D Rotary Position
  Encoding


A repository for leveraging Self-Sovereign Identity in applications

Privacy and Trust Redefined in Federated Machine Learning

Machine Learning and Knowledge Extraction

A Distributed Trust Framework for Privacy-Preserving Machine Learning

Syft 0.5: A Platform for Universally Deployable Structured Transparency


An advanced geospatial data analysis platform

Automated Mapping of Transportation Embankments in Fine-Resolution LiDAR DEMs


Electronic structure Python package for post analysis and large scale tight-binding DFT/NEGF calculations

Single spin localization and manipulation in graphene open-shell nanostructures

Carbon-based nanostructures as a versatile platform for tunable π-magnetism

Journal of physics. Condensed matter : an Institute of Physics journal

Quantum Interference Engineering of Nanoporous Graphene for Carbon Nanocircuitry

Journal of the American Chemical Society

Charge transport in doped zigzag phosphorene nanoribbons

Phosphorene as a nanoelectromechanical material

Simple and efficient LCAO basis sets for the diffuse states in carbon nanostructures

Electrochemical Control of Charge Current Flow in Nanoporous Graphene

Tailoring giant quantum transport anisotropy in disordered nanoporous graphenes


Creative Commons Attribution 4.0 International

Multi-subject data for the Spine Generic project

Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

Minimum detectable spinal cord atrophy with automatic segmentation: Investigations using an open-access dataset of healthy participants

Towards contrast-agnostic soft segmentation of the spinal cord

Automatic Segmentation of the Spinal Cord Nerve Rootlets

Spine Generic Public Database (Multi-Subject)

Reproducible Spinal Cord Quantitative MRI Analysis with the Spinal Cord Toolbox

Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine


COCO API - Dataset @ http://cocodataset.org/

Light-Head R-CNN: In Defense of Two-Stage Object Detector

DetNet: A Backbone network for Object Detection

Exemplar Fine-Tuning for 3D Human Model Fitting Towards In-the-Wild 3D Human Pose Estimation

Cross-Domain Adaptation for Animal Pose Estimation

Poly-YOLO: higher speed, more precise detection and instance segmentation for YOLOv3

End-to-End Referring Video Object Segmentation with Multimodal Transformers

MVTec D2S: Densely Segmented Supermarket Dataset

Attend Refine Repeat: Active Box Proposal Generation via In-Out Localization

Nanoparticle Recognition on Scanning Probe Microscopy Images Using Computer Vision and Deep Learning

PatchPerPix for Instance Segmentation


Python language bindings for preCICE

FEniCS-preCICE: Coupling FEniCS to other Simulation Software

CFD/CSD Coupling for an Isolated Rotor Using preCICE

Gym-preCICE: Reinforcement Learning Environments for Active Flow Control


Automatically create Faiss knn indices with the most optimal similarity search parameters.

LAION-5B: An open large-scale dataset for training next generation image-text models

ImageBind-LLM: Multi-modality Instruction Tuning

BioReader: a Retrieval-Enhanced Text-to-Text Transformer for Biomedical Literature

Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing

An Empirical Evaluation of Columnar Storage Formats

Automating Nearest Neighbor Search Configuration with Constrained Optimization

X&Fuse: Fusing Visual Information in Text-to-Image Generation

OpenStreetView-5M: The Many Roads to Global Visual Geolocation


Quickly build Explainable AI dashboards that show the inner workings of so-called "blackbox" machine learning models.

Software for Dataset-wide XAI: From Local Explanations to Global Insights with Zennit, CoRelAy, and ViRelAy

Explainable AI for Bioinformatics: Methods, Tools, and Applications


A statistical-parametric model for assessing wind hazard from tropical cyclones


Cycle oriented CartoCSS style.

RobotCycle: Assessing Cycling Safety in Urban Environments


Climate from Space application for ESA's CCI+ program.


Semantic Segmentation Architectures Implemented in PyTorch

Adaptive Masked Proxies for Few-Shot Segmentation

Collaborative Global-Local Networks for Memory-Efficient Segmentation of Ultra-High Resolution Images

Benchmarking the Robustness of Semantic Segmentation Models

On the Impact of Lossy Image and Video Compression on the Performance of Deep Convolutional Neural Network Architectures

Fast acoustic scattering using convolutional neural networks

Risk-Aware Planning and Assignment for Ground Vehicles using Uncertain Perception from Aerial Vehicles

Fully Hyperbolic Convolutional Neural Networks

Associative Embedding for Game-Agnostic Team Discrimination

Automated Damage Inspection of Power Transmission Towers from UAV Images

Optimizing Nondecomposable Data Dependent Regularizers via Lagrangian Reparameterization offers Significant Performance and Efficiency Gains


Ultralytics YOLO11

DETRs Beat YOLOs on Real-time Object Detection

YOLOv9: Learning What You Want to Learn Using Programmable Gradient
  Information

Foundational Models Defining a New Era in Vision: A Survey and Outlook

Gold-YOLO: Efficient Object Detector via Gather-and-Distribute Mechanism

Fracture Detection in Pediatric Wrist Trauma X-ray Images Using YOLOv8 Algorithm

KPE-YOLOv5: An Improved Small Target Detection Algorithm Based on YOLOv5

Radar-Camera Fusion for Object Detection and Semantic Segmentation in Autonomous Driving: A Comprehensive Review

RFAConv: Innovating Spatial Attention and Standard Convolutional Operation

Parking Time Violation Tracking Using YOLOv8 and Tracking Algorithms

ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation


Port of OpenAI's Whisper model in C/C++

Robust Speech Recognition via Large-Scale Weak Supervision

Real-Time Multimodal Cognitive Assistant for Emergency Medical Services


The Kotlin Programming Language.

Reflekt: a Library for Compile-Time Reflection in Kotlin

Proceedings of the 44th International Conference on Software Engineering: Software Engineering in Practice

Contract Usage and Evolution in Android Mobile Applications

Kotlin from the perspective of a static analyzer developer

Proceedings of the Institute for System Programming of the RAS


Hierarchical Alignment Format

HAL: a hierarchical format for storing and analyzing multiple genome alignments

A paternal bias in germline mutation is widespread in amniotes and can arise independently of cell division numbers

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments

Complex evolutionary processes maintain an ancient chromosomal inversion

Proceedings of the National Academy of Sciences of the United States of America

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants


Port of MATPOWER to Python

PyPSA: Python for Power System Analysis

Linear optimal power flow using cycle flows

hynet: An Optimal Power Flow Framework for Hybrid AC/DC Power Systems

Monitoring Long Term Voltage Instability Due to Distribution and Transmission Interaction Using Unbalanced μ PMU and PMU Measurements

PowNet: A Network-Constrained Unit Commitment/Economic Dispatch Model for Large-Scale Power Systems Analysis

Urban Generative Intelligence (UGI): A Foundational Platform for Agents in Embodied City Environment

Solving AC Power Flow with Graph Neural Networks under Realistic Constraints

InterPSS: A New Generation Power System Simulation Engine

Gym-ANM: Open-source software to leverage reinforcement learning for power system management in research and education

Projections onto the Set of Feasible Inputs and the Set of Feasible Solutions


The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

Case Report of Dual-Site Neurostimulation and Chronic Recording of Cortico-Striatal Circuitry in a Patient With Treatment Refractory Obsessive Compulsive Disorder

Multi-Modal Neuroimaging Analysis and Visualization Tool (MMVT)


Package for consistent reporting of relative free energy results

Best Practices for Alchemical Free Energy Calculations [Article v1.0]

Living journal of computational molecular science

Towards chemical accuracy for alchemical free energy calculations with hybrid physics-based machine learning / molecular mechanics potentials

Identifying and overcoming the sampling challenges in relative binding free energy calculations of a model protein:protein complex

bioRxiv : the preprint server for biology

GRAM: A True Null Model for Relative Binding Affinity Predictions

Journal of chemical information and modeling


ThinkHazard!


Near-optimal RNA-Seq quantification

A simple guide to de novo transcriptome assembly and annotation

Systematic Assessment of Transcriptomic Biomarkers for Immune Checkpoint Blockade Response in Cancer Immunotherapy

H3.3K27M Mutation Controls Cell Growth and Resistance to Therapies in Pediatric Glioma Cell Lines

Meta-Analysis of the Public RNA-Seq Data of the Western Honeybee Apis mellifera to Construct Reference Transcriptome Data

Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis

Discovering tumor-reactive T-cell receptors through single-cell sequencing of tumor-infiltrating lymphocytes

Unveiling the immunomodulatory shift: Epithelial-mesenchymal transition Alters immune mechanisms of amniotic epithelial cells


Free to use online tool for labelling photos. https://makesense.ai

SSD: Single Shot MultiBox Detector

On Creating Benchmark Dataset for Aerial Image Interpretation: Reviews, Guidances, and Million-AID

AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments

Object Detection in Indian Food Platters using Transfer Learning with YOLOv4

Human-in-the-Loop Segmentation of Earth Surface Imagery

Literature Review on Ship Localization, Classification, and Detection Methods Based on Optical Sensors and Neural Networks

SWDet: Anchor-Based Object Detector for Solid Waste Detection in Aerial Images

IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing

SHINE: Deep Learning-Based Accessible Parking Management System

Avo-AirDB: An avocado UAV Database for agricultural image segmentation and classification

Machine-Learning Approach for Automatic Detection of Wild Beluga Whales from Hand-Held Camera Pictures


A tool for estimating repeat sizes

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

Whole genome sequencing for the diagnosis of neurological repeat expansion disorders in the UK: a retrospective diagnostic accuracy and prospective clinical validation study

Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Use of whole genome sequencing to determine genetic basis of suspected mitochondrial disorders: cohort study

Structural variation analysis of 6,500 whole genome sequences in amyotrophic lateral sclerosis


Train learned optimizers in Jax.

Gradients are Not All You Need

VeLO: Training Versatile Learned Optimizers by Scaling Up

evosax: JAX-based Evolution Strategies

Practical tradeoffs between memory, compute, and performance in learned optimizers

A Closer Look at Learned Optimization: Stability, Robustness, and Inductive Biases

Transformer-Based Learned Optimization

Learning to Optimize for Reinforcement Learning

Variance-Reduced Gradient Estimation via Noise-Reuse in Online Evolution Strategies


C++ API & command-line toolkit for working with BAM data

BlobToolKit – Interactive Quality Assessment of Genome Assemblies

β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

Insights into HLA-G Genetics Provided by Worldwide Haplotype Diversity

PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms

Genome-wide somatic variant calling using localized colored de Bruijn graphs

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

YES1 amplification is a mechanism of acquired resistance to EGFR inhibitors identified by transposon mutagenesis and clinical genomics

Inter-individual variability contrasts with regional homogeneity in the human brain DNA methylome


zk-SNARK library.

ZETH: On Integrating Zerocash on Ethereum

TEEvil: Identity Lease via Trusted Execution Environments

Formal Verification of Zero-Knowledge Circuits

International Workshop on the ACL2 Theorem Prover and Its Applications

Hardware acceleration of number theoretic transform for zk‐SNARK

Extending Expressive Access Policies with Privacy Features

ZKSENSE: A Friction-less Privacy-Preserving Human Attestation Mechanism for Mobile Devices

Proceedings on Privacy Enhancing Technologies


Parallel t-SNE implementation with Python and Torch wrappers.

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Machine-learning-based Brokers for Real-time Classification of the LSST Alert Stream

The Astrophysical Journal Supplement Series

Hyper-Spectral Imaging Technique in the Cultural Heritage Field: New Possible Scenarios

UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasets

TDAM: a Topic-Dependent Attention Model for Sentiment Analysis

Zenodo (CERN European Organization for Nuclear Research)

ChemPlot, a Python library for chemical space visualization

Identifying safe intersection design through unsupervised feature extraction from satellite imagery

Computer-Aided Civil and Infrastructure Engineering

Equivariance and Invariance Inductive Bias for Learning from Insufficient Data

Multi-type Disentanglement without Adversarial Training

Auto-Encoding Variational Bayes for Inferring Topics and Visualization


JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

HuggingGPT: Solving AI Tasks with ChatGPT and its Friends in Hugging Face

CodePlan: Repository-level Coding using LLMs and Planning

EASYTOOL: Enhancing LLM-based Agents with Concise Tool Instruction

TaskWeaver: A Code-First Agent Framework

TaskBench: Benchmarking Large Language Models for Task Automation


Gene Set Enrichment Analysis in Python

GSEApy: a comprehensive package for performing gene set enrichment analysis in Python

GSEA-InContext: identifying novel and common patterns in expression experiments

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution

Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer

Distinct elongation stalls during translation are linked with distinct pathways for mRNA degradation

T cells modulate the microglial response to brain ischemia

A network-based approach reveals the dysregulated transcriptional regulation in non-alcoholic fatty liver disease

A transcriptional cross species map of pancreatic islet cells

Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target


Differential privacy validator and runtime

Widespread Underestimation of Sensitivity in Differentially Private Libraries and How to Fix It

Precision-based attacks and interval refining: how to break, then fix, differential privacy on finite computers

Lessons Learned: Surveying the Practicality of Differential Privacy in the Industry

Differential Privacy: What is all the noise about?


A Heterogeneous Benchmark for Information Retrieval. Easy to use, evaluate your models across 15+ diverse IR datasets.

BEIR: A Heterogenous Benchmark for Zero-shot Evaluation of Information Retrieval Models

ColBERTv2: Effective and Efficient Retrieval via Lightweight Late Interaction

Pretrained Transformers for Text Ranking: BERT and Beyond

GPL: Generative Pseudo Labeling for Unsupervised Domain Adaptation of Dense Retrieval

RetroMAE: Pre-Training Retrieval-oriented Language Models Via Masked Auto-Encoder

Pre-training Methods in Information Retrieval

MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval

COCO-DR: Combating Distribution Shifts in Zero-Shot Dense Retrieval with Contrastive and Distributionally Robust Learning

LaPraDoR: Unsupervised Pretrained Dense Retriever for Zero-Shot Text Retrieval

An Analysis of Fusion Functions for Hybrid Retrieval


Official repository of OFA (ICML 2022). Paper: OFA: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework

GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding

Do Androids Laugh at Electric Sheep? Humor "Understanding" Benchmarks from The New Yorker Caption Contest

Breaking Common Sense: WHOOPS! A Vision-and-Language Benchmark of Synthetic and Compositional Images

Visualize Before You Write: Imagination-Guided Open-Ended Text Generation

Prompt Tuning for Generative Multimodal Pretrained Models

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

You Need Multiple Exiting: Dynamic Early Exiting for Accelerating Unified Vision Language Model

FAITHSCORE: Evaluating Hallucinations in Large Vision-Language Models

IFSeg: Image-free Semantic Segmentation via Vision-Language Model


A Python library for reading, validating, and writing transit schedule information in the GTFS format.

Multimodal urban mobility and multilayer transport networks

Unavailable Transit Feed Specification: Making It Available With Recurrent Neural Networks

IEEE Transactions on Intelligent Transportation Systems


The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.  This fork is used to manage Swift’s stable releases of Clang as well as support the Swift project.

In-Kernel Control-Flow Integrity on Commodity OSes using ARM Pointer Authentication

Camouflage: Hardware-assisted CFI for the ARM Linux kernel

Representing LLVM-IR in a Code Property Graph

Implementation of Live Reverse Debugging in LLDB


Survival analysis built on top of scikit-learn

An Efficient Training Algorithm for Kernel Survival Support Vector Machines

Novel artificial intelligence machine learning approaches to precisely predict survival and site-specific recurrence in cervical cancer: A multi-institutional study

Neural Fine-Gray: Monotonic neural networks for competing risks


SOLL is a new compiler for generate Ewasm from solidity and yul. See a demo here: https://asciinema.org/a/ezJqNLicn5fya02zwu4VXIo8a

WANA: Symbolic Execution of Wasm Bytecode for Cross-Platform Smart Contract Vulnerability Detection

VM Matters: A Comparison of WASM VMs and EVMs in the Performance of Blockchain Smart Contracts


Julia package to run Dynamic Power System simulations. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.

PowerDynamics.jl - An experimentally validated open-source package for the dynamical analysis of power grids.

Revisiting Power Systems Time-Domain Simulation Methods and Models

PowerSimulationsDynamics.jl -- An Open Source Modeling Package for Modern Power Systems with Inverter-Based Resources


Phonetisaurus G2P

The fifth 'CHiME' Speech Separation and Recognition Challenge: Dataset, task and baselines

Simple and Effective Zero-shot Cross-lingual Phoneme Recognition

Design Challenges in Named Entity Transliteration

Exploration of End-to-End ASR for OpenSTT - Russian Open Speech-to-Text Dataset

Assisting Maritime Search and Rescue (SAR) Personnel with AI-Based Speech Recognition and Smart Direction Finding

Journal of Marine Science and Engineering

The THUEE System Description for the IARPA OpenASR21 Challenge

Dealing with dialectal variation in the construction of the Basque historical corpus

Workshop on NLP for Similar Languages, Varieties and Dialects

LinTO Platform: A Smart Open Voice Assistant for Business Environments

Towards Turkish ASR: Anatomy of a rule-based Turkish g2p


cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

Raincloud plots: a multi-platform tool for robust data visualization

DeepC: predicting 3D genome folding using megabase-scale transfer learning

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

No Evidence That Frontal Eye Field tDCS Affects Latency or Accuracy of Prosaccades

Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints

The Distribution and Spread of Susceptible and Resistant Neisseria gonorrhoeae Across Demographic Groups in a Major Metropolitan Center

Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing

rigrag: high-resolution mapping of genic targeting preferences during HIV-1 integration in vitro and in vivo

Screening and Identification of Potential Biomarkers in Hepatitis B Virus-Related Hepatocellular Carcinoma by Bioinformatics Analysis

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions


A library for experimenting with, training and evaluating neural networks, with a focus on adversarial robustness.

Adversarial Examples Are Not Bugs, They Are Features

Reliable evaluation of adversarial robustness with an ensemble of diverse parameter-free attacks

Overfitting in adversarially robust deep learning

RobustBench: a standardized adversarial robustness benchmark

Measuring Robustness to Natural Distribution Shifts in Image Classification

Do Adversarially Robust ImageNet Models Transfer Better?

Uncovering the Limits of Adversarial Training against Norm-Bounded Adversarial Examples

Adversarial Robustness as a Prior for Learned Representations

Theoretical Analysis of Self-Training with Deep Networks on Unlabeled Data

Simulating a Primary Visual Cortex at the Front of CNNs Improves Robustness to Image Perturbations


a truly censorship-resistant alternative to Twitter that has a chance of working

Bluesky and the AT Protocol: Usable Decentralized Social Media

Exploring the Nostr Ecosystem: A Study of Decentralization and
  Resilience


MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities

Localization of T cell clonotypes using the Visium spatial transcriptomics platform

Use of machine learning to identify a T cell response to SARS-CoV-2

Rapid expansion of Treg cells protects from collateral colitis following a viral trigger

Tumor immune microenvironment and mutational analysis of tracheal adenoid cystic carcinoma

Tumor-induced double positive T cells display distinct lineage commitment mechanisms and functions

RNA-Seq-Based TCR Profiling Reveals Persistently Increased Intratumoral Clonality in Responders to Anti-PD-1 Therapy

Time-spatial analysis of T cell receptor repertoire in esophageal squamous cell carcinoma patients treated with combined radiotherapy and PD-1 blockade

The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling

Clonal origin of KMT2A wild-type lineage-switch leukemia following CAR-T cell and blinatumomab therapy


fastFM: A Library for Factorization Machines

Content-aware Neural Hashing for Cold-start Recommendation

PROCEEDINGS OF THE 43RD INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL (SIGIR '20)

HitFraud: A Broad Learning Approach for Collective Fraud Detection in Heterogeneous Information Networks

Modeling Game Avatar Synergy and Opposition through Embedding in Multiplayer Online Battle Arena Games


Creative Commons Attribution Share Alike 4.0 International

This book will be an undergraduate textbook written in the univalent style, taking advantage of the presence of symmetry in the logic at an early stage.

Synthetic fibered (∞,1)-category theory

On Small Types in Univalent Foundations

Central H-spaces and banded types

Eilenberg-MacLane spaces and stabilisation in homotopy type theory

On symmetries of spheres in univalent foundations

Limits and colimits of synthetic ∞-categories

Delooping cyclic groups with lens spaces in homotopy type theory

Delooping generated groups in homotopy type theory

Domain Theory in Constructive and Predicative Univalent Foundations


National Carbon Credit Registry Digital Public Good (DPG) by Digital For Climate (D4C) collaboration. Code coordinated by ExO/CDO & BPPS/Climate.


Pool-based active learning in Python

modAL: A modular active learning framework for Python

libact: Pool-based Active Learning in Python

Goldilocks: Just-Right Tuning of BERT for Technology-Assisted Review

Heuristic Stopping Rules For Technology-Assisted Review

Proceedings of the 21st ACM Symposium on Document Engineering

A Lagrangian Duality Approach to Active Learning

Active Feature Selection for the Mutual Information Criterion

TARexp: A Python Framework for Technology-Assisted Review Experiments

Proceedings of the 45th International ACM SIGIR Conference on Research and Development in Information Retrieval

TAR on Social Media: A Framework for Online Content Moderation

A Reproducibility Study of Goldilocks: Just-Right Tuning of BERT for TAR

Re-Benchmarking Pool-Based Active Learning for Binary Classification


ns-3 module for simulating mmWave-based cellular systems. See https://ieeexplore.ieee.org/document/8344116/ (open access) as a reference.

End-to-End Simulation of 5G mmWave Networks

IEEE Communications Surveys and Tutorials

Improved Handover Through Dual Connectivity in 5G mmWave Mobile Networks

IEEE Journal on Selected Areas in Communications

Modeling and Design of Millimeter-Wave Networks for Highway Vehicular Communication

5G mmWave Module for ns-3 Network Simulator

ns-3 Implementation of the 3GPP MIMO Channel Model for Frequency Spectrum above 6 GHz

A Framework for End-to-End Evaluation of 5G mmWave Cellular Networks in ns-3

The Bufferbloat Problem over Intermittent Multi-Gbps mmWave Links

Caching-Aided Collaborative D2D Operation for Predictive Data Dissemination in Industrial IoT

ns-O-RAN: Simulating O-RAN 5G Systems in ns-3

mmWave Enabled Connected Autonomous Vehicles: A Use Case with V2V Cooperative Perception


A pytorch adversarial library for attack and defense methods on images and graphs

Graph Structure Learning for Robust Graph Neural Networks

Adversarial Attack and Defense on Graph Data: A Survey

Node Similarity Preserving Graph Convolutional Networks

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks

Graph Information Bottleneck

DeepRobust: A PyTorch Library for Adversarial Attacks and Defenses

Adversarial Attacks and Defenses on Graphs: A Review and Empirical Study

Elastic Graph Neural Networks

Adversarial Attacks and Defenses in Images, Graphs and Text: A Review

Are Defenses for Graph Neural Networks Robust?


Species Presence/Absence R Trends Analyses

Widespread losses of pollinating insects in Britain

An operational workflow for producing periodic estimates of species occupancy at national scales

Biological reviews/Biological reviews of the Cambridge Philosophical Society

Fast Bayesian inference for large occupancy datasets

Fast Bayesian inference for large occupancy data sets, using the Polya-Gamma scheme


PReconditioned Iterative MultiMethod Eigensolver for solving symmetric/Hermitian eigenvalue problems and singular value problems

PRIMME_SVDS: A High-Performance Preconditioned SVD Solver for Accurate Large-Scale Computations

Scalable Spectral Clustering Using Random Binning Features

Algorithm xxx: Faster Randomized SVD with Dynamic Shifts

svds-C: A multi-thread C code for computing truncated singular value decomposition


Image augmentation library in Python for machine learning.

Augmentor: An Image Augmentation Library for Machine Learning

Biomedical image augmentation using Augmentor

Generative Adversarial Networks for Image Augmentation in Agriculture: A Systematic Review

A comparative study of the effectiveness of using popular DNN object detection algorithms for pith detection in cross-sectional images of parawood

BrainQCNet: a Deep Learning attention-based model for the automated detection of artifacts in brain structural MRI scans

Face Phylogeny Tree Using Basis Functions

Patch augmentation: Towards efficient decision boundaries for neural networks

Measuring the spectral index of turbulent gas with deep learning from projected density maps

Monthly Notices of the Royal Astronomical Society

DALib: A Curated Repository of Libraries for Data Augmentation in Computer Vision

Scalable Modular Synthetic Data Generation for Advancing Aerial Autonomy


in-toto Attestation Framework


Python implementations of the Boruta all-relevant feature selection method.

Feature Selection with the Boruta Package

Identifying Transcriptomic Signatures and Rules for SARS-CoV-2 Infection

Frontiers in cell and developmental biology

Feature Selection Algorithms as One of the Python Data Analytical Tools

BioCompoundML: A General Biofuel Property Screening Tool for Biological Molecules Using Random Forest Classifiers

Identification of Cell Markers and Their Expression Patterns in Skin Based on Single-Cell RNA-Sequencing Profiles

Deep Learning Prediction of Adverse Drug Reactions in Drug Discovery Using Open TG–GATEs and FAERS Databases

AI and High-Grade Glioma for Diagnosis and Outcome Prediction: Do All Machine Learning Models Perform Equally Well?

Breast Cancer Classification on Multiparametric MRI – Increased Performance of Boosting Ensemble Methods

Technology in cancer research & treatment

Identifying the Signatures and Rules of Circulating Extracellular MicroRNA for Distinguishing Cancer Subtypes

Investigation and Prediction of Human Interactome Based on Quantitative Features

Frontiers in bioengineering and biotechnology


Software-Defined GPS Signal Simulator

Satellite-Based Communications Security: A Survey of Threats, Solutions, and Research Challenges

On GPS spoofing of aerial platforms: a review of threats, challenges, methodologies, and future research directions

Use of Supervised Machine Learning for GNSS Signal Spoofing Detection with Validation on Real-World Meaconing and Spoofing Data—Part I

Spotr: GPS Spoofing Detection via Device Fingerprinting

Hijacking Unmanned Aerial Vehicle by Exploiting Civil GPS Vulnerabilities Using Software-defined Radio

Relay/replay attacks on GNSS signals

Distributed and Mobile Message Level Relaying/Replaying of GNSS Signals

The International Technical Meeting of the The Institute of Navigation

Road Traffic Poisoning of Navigation Apps: Threats and Countermeasures

Cryptography Is Not Enough: Relay Attacks on Authenticated GNSS Signals

GPS Spoofing Mitigation and Timing Risk Analysis in Networked PMUs via Stochastic Reachability


Fast genome-wide functional annotation through orthology assignment

Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids

Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14

Higher genome variability within metabolism genes associates with recurrent Clostridium difficile infection

The Comparative Analysis of Genomic Diversity and Genes Involved in Carbohydrate Metabolism of Eighty-Eight Bifidobacterium pseudocatenulatum Isolates from Different Niches of China

Rab2 and Rab6 are Implicated in Acrosome Formation during Spermatogenesis in Eriocheir sinensis: Based on Sperm Proteome

Frontiers in bioscience (Landmark edition)

Enhanced Bioremediation Potential of Shewanella decolorationis RNA Polymerase Mutants and Evidence for Novel Azo Dye Biodegradation Pathways

Genomic, phenotypic, and clinical safety of Limosilactobacillus reuteri ATCC PTA 4659

Journal of industrial microbiology & biotechnology

Pan-genome analysis of Streptococcus suis serotype 2 highlights genes associated with virulence and antibiotic resistance


Implementation of Imagen, Google's Text-to-Image Neural Network, in Pytorch

Denoising Diffusion Probabilistic Models

Photorealistic Text-to-Image Diffusion Models with Deep Language Understanding

U2-Net: Going deeper with nested U-structure for salient object detection

Elucidating the Design Space of Diffusion-Based Generative Models

UCTransNet: Rethinking the Skip Connections in U-Net from a Channel-Wise Perspective with Transformer

MaxViT: Multi-Axis Vision Transformer

A Comprehensive Survey of AI-Generated Content (AIGC): A History of Generative AI from GAN to ChatGPT

Analog Bits: Generating Discrete Data using Diffusion Models with Self-Conditioning

Perception Prioritized Training of Diffusion Models

SparseFusion: Distilling View-conditioned Diffusion for 3D Reconstruction


Underthesea - Vietnamese NLP Toolkit

The BigScience ROOTS Corpus: A 1.6TB Composite Multilingual Dataset

A Feature-Rich Vietnamese Named-Entity Recognition Model

Conversational Machine Reading Comprehension for Vietnamese Healthcare Texts

International Conference on Computational Collective Intelligence

An Efficient Model for Sentiment Analysis of Electronic Product Reviews in Vietnamese

Non-Standard Vietnamese Word Detection and Normalization for Text-to-Speech

KC4Align: Improving Sentence Alignment method for Low-resource Language Pairs

Pacific Asia Conference on Language, Information and Computation

Integrating Image Features with Convolutional Sequence-to-sequence Network for Multilingual Visual Question Answering


Amphion (/æmˈfaɪən/) is a toolkit for Audio, Music, and Speech Generation. Its purpose is to support reproducible research and help junior researchers and engineers get started in the field of audio, music, and speech generation research and development.

Amphion: An Open-Source Audio, Music and Speech Generation Toolkit

CoMoSVC: Consistency Model-based Singing Voice Conversion

WenetSpeech4TTS: A 12,800-hour Mandarin TTS Corpus for Large Speech
  Generation Model Benchmark

Emilia: An Extensive, Multilingual, and Diverse Speech Dataset for
  Large-Scale Speech Generation

Single-Codec: Single-Codebook Speech Codec towards High-Performance
  Speech Generation

Leveraging Content-based Features from Multiple Acoustic Models for Singing Voice Conversion

SingVisio: Visual Analytics of Diffusion Model for Singing Voice
  Conversion

AudioTime: A Temporally-aligned Audio-text Benchmark Dataset


NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

Dynamic genome evolution in a model fern

Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b Virus Infection in Domestic Dairy Cattle and Cats, United States, 2024

Updated site concordance factors minimize effects of homoplasy and taxon sampling

RAxML Grove: an empirical phylogenetic tree database

Mobilome-driven partitions of the resistome in Salmonella

Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota)

MAST: Phylogenetic Inference with Mixtures Across Sites and Trees

The Chloroplast Genome of Wild Saposhnikovia divaricata: Genomic Features, Comparative Analysis, and Phylogenetic Relationships

The First Whole Genome Sequencing of Agaricus bitorquis and Its Metabolite Profiling

Gut Microbiota Taxon-Dependent Transformation of Microglial M1/M2 Phenotypes Underlying Mechanisms of Spatial Learning and Memory Impairment after Chronic Methamphetamine Exposure


An intake plugin for parsing an Earth System Model (ESM) catalog and loading assets into xarray datasets.


:bouncing_ball_person: Pytorch ReID: A tiny, friendly, strong pytorch implement of person re-id / vehicle re-id baseline. Tutorial https://github.com/layumi/Person_reID_baseline_pytorch/tree/master/tutorial

Swin Transformer: Hierarchical Vision Transformer using Shifted Windows

Random Erasing Data Augmentation

In Defense of the Triplet Loss for Person Re-Identification

Deep Metric Learning via Lifted Structured Feature Embedding

Deep Learning for Person Re-identification: A Survey and Outlook

Bag of Tricks and A Strong Baseline for Deep Person Re-identification

Circle Loss: A Unified Perspective of Pair Similarity Optimization

Joint Discriminative and Generative Learning for Person Re-identification

Two at Once: Enhancing Learning and Generalization Capacities via IBN-Net

SphereReID: Deep Hypersphere Manifold Embedding for Person Re-Identification

Journal of Visual Communication and Image Representation


A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model.

Turbulent kinetic energy over large offshore wind farms observed and simulated by the mesoscale model WRF (3.8.1)


Time Ordered Astrophysics Scalable Tools

Planck intermediate results. LVII. Joint Planck LFI and HFI data processing

HAL (Le Centre pour la Communication Scientifique Directe)

Exploring cosmic origins with CORE: Mitigation of systematic effects

Journal of Cosmology and Astroparticle Physics

Full-sky beam convolution for cosmic microwave background applications

Monthly notices of the Royal Astronomical Society

Simulating Calibration and Beam Systematics for a Future CMB Space Mission with the TOAST Package

MAPPRAISER: A massively parallel map-making framework for multi-kilo pixel CMB experiments

The Simons Observatory: Beam Characterization for the Small Aperture Telescopes

Polarization and variability of compact sources measured in Planck time-ordered data


Open source version of Google Authenticator (except the Android app)

T/Key: Second-Factor Authentication From Secure Hash Chains

Practical Threshold Multi-Factor Authentication

IEEE Transactions on Information Forensics and Security

An Efficient Two-Factor Authentication Scheme Based on the Merkle Tree


Official Repository for the Uni-Mol Series Methods

Uni-Mol: A Universal 3D Molecular Representation Learning Framework

International Conference on Learning Representations

PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences

Highly Accurate Quantum Chemical Property Prediction with Uni-Mol+

Uni-QSAR: an Auto-ML Tool for Molecular Property Prediction

MUBen: Benchmarking the Uncertainty of Molecular Representation Models

Quantifying the Hardness of Bioactivity Prediction Tasks for Transfer Learning

Journal of Chemical Information and Modeling

Uni-Mol Docking V2: Towards Realistic and Accurate Binding Pose Prediction


Massively Parallel and Dynamic Algorithms for Minimum Size Clustering

Private Hierarchical Clustering in Federated Networks

Locality-Sensitive Hashing Does Not Guarantee Privacy! Attacks on Google's FLoC and the MinHash Hierarchy System

On the Robustness of Topics API to a Re-Identification Attack

Building K-Anonymous User Cohorts with Consecutive Consistent Weighted Sampling (CCWS)

Evaluating Impact of User-Cluster Targeted Attacks in Matrix Factorisation Recommenders

Attack Detection Using Item Vector Shift in Matrix Factorisation Recommenders


cluster data collected from production clusters in Alibaba for cluster management research

Learning Scheduling Algorithms for Data Processing Clusters

TPP: Transparent Page Placement for CXL-Enabled Tiered-Memory

From Cloud to Edge: A First Look at Public Edge Platforms

Characterizing Co-located Datacenter Workloads: An Alibaba Case Study

esDNN: Deep Neural Network Based Multivariate Workload Prediction in Cloud Computing Environments

Tailored Learning-Based Scheduling for Kubernetes-Oriented Edge-Cloud System

Adaptive Prediction Models for Data Center Resources Utilization Estimation

IEEE Transactions on Network and Service Management

ThermoSim: Deep learning based framework for modeling and simulation of thermal-aware resource management for cloud computing environments

In Search of a Fast and Efficient Serverless DAG Engine

A Deep Reinforcement Learning Approach to the Optimization of Data Center Task Scheduling


Run LLMs at home, BitTorrent-style. Fine-tuning and inference up to 10x faster than offloading

Challenges and Applications of Large Language Models

Petals: Collaborative Inference and Fine-tuning of Large Models

Understanding LLMs: A Comprehensive Overview from Training to Inference

Distributed Inference and Fine-tuning of Large Language Models Over The Internet

The Ultimate Guide to Fine-Tuning LLMs from Basics to Breakthroughs: An Exhaustive Review of Technologies, Research, Best Practices, Applied Research Challenges and Opportunities


Python Package for the Analysis of Paleoclimate Data. Documentation at


Neural machine translation and sequence learning using TensorFlow

Self-Attention with Relative Position Representations

Semantic Neural Machine Translation using AMR

Transactions of the Association for Computational Linguistics

Boosting Neural Machine Translation with Similar Translations

Guided Alignment Training for Topic-Aware Neural Machine Translation

Towards Automating Code Review Activities

Contextual Handling in Neural Machine Translation: Look Behind, Ahead and on Both Sides

European Association for Machine Translation Conferences/Workshops

Transfer Learning in Multilingual Neural Machine Translation with Dynamic Vocabulary

Multilingual Neural Machine Translation for Zero-Resource Languages

Revisiting Multi-Domain Machine Translation

Zenodo (CERN European Organization for Nuclear Research)

OpenNMT System Description for WNMT 2018: 800 words/sec on a single-core CPU

NEURAL MACHINE TRANSLATION AND GENERATION


Haplotype VCF comparison tools

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

Best practices for evaluating single nucleotide variant calling methods for microbial genomics

Resolving the Full Spectrum of Human Genome Variation using Linked-Reads

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Benchmarking challenging small variants with linked and long reads

Semi-automated assembly of high-quality diploid human reference genomes

The Contribution of Mosaic Variants to Autism Spectrum Disorder

Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers

Systematic comparison of somatic variant calling performance among different sequencing depth and mutation frequency


A package for capturing and analyzing network flow data and intraflow data, for network research, forensics, and security monitoring.

Budgeted Online Selection of Candidate IoT Clients to Participate in Federated Learning

Real Network Traffic Collection and Deep Learning for Mobile App Identification

Wireless Communications and Mobile Computing

OS Fingerprinting: New Techniques and a Study of Information Gain and Obfuscation

Towards Network Anomaly Detection Using Graph Embedding

Revisiting IoT Device Identification

Unsupervised Detection and Clustering of Malicious TLS Flows

Neurosymbolic Systems of Perception & Cognition: The Role of Attention

Network Traffic Classification based on Single Flow Time Series Analysis

Traffic Analytics Development Kits (TADK): Enable Real-Time AI Inference in Networking Apps

International Conference on Ubiquitous and Future Networks

A survey of methods for encrypted network traffic fingerprinting

Mathematical biosciences and engineering : MBE


Scalable toolkit for efficient model alignment

Nemotron-4 15B Technical Report

HelpSteer2: Open-source dataset for training top-performing reward models

NeMo-Aligner: Scalable Toolkit for Efficient Model Alignment


Neural Pipeline Search (NePS): Helps deep learning experts find the best neural pipeline.

πBO: Augmenting Acquisition Functions with User Beliefs for Bayesian Optimization

PriorBand: Practical Hyperparameter Optimization in the Age of Deep Learning

Construction of Hierarchical Neural Architecture Search Spaces based on Context-free Grammars

Python Wrapper for Simulating Multi-Fidelity Optimization on HPO Benchmarks without Any Wait


rSFSW2: A R package to create soil water balance simulation experiment


adegenet: a R package for the multivariate analysis of genetic markers

A fast likelihood solution to the genetic clustering problem

Geography and Environment Shape Landscape Genetics of Mediterranean Alpine Species Silene ciliata Poiret. (Caryophyllaceae)

Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species

The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska

Carnivores, competition and genetic connectivity in the Anthropocene

Genetic Diversity and Population Structure Analysis of the USDA Olive Germplasm Using Genotyping-By-Sequencing (GBS)

Long range gene flow beyond predictions from oceanographic transport in a tropical marine foundation species

Intronic primers reveal unexpectedly high major histocompatibility complex diversity in Antarctic fur seals

Genetic trajectories of zebra and quagga mussel invasions across three decades: Lake Erie versus Hudson River populations


Android Application Identifier for Packers, Protectors, Obfuscators and Oddities - PEiD for Android

Beyond the virus: a first look at coronavirus-themed Android malware

Beyond the Virus: A First Look at Coronavirus-themed Mobile Malware

A First Look at Android Applications in Google Play related to Covid-19

DroidPDF: The Obfuscation Resilient Packer Detection Framework for Android Apps

A Multi-Tier Security Analysis of Official Car Management Apps for Android

Empirical Security and Privacy Analysis of Mobile Symptom Checking Apps on Google Play

SECRYPT 2021: PROCEEDINGS OF THE 18TH INTERNATIONAL CONFERENCE ON SECURITY AND CRYPTOGRAPHY

FirmwareDroid: Security Analysis of the Android Firmware EcoSystem


NLP tools for Turkish.

Embeddings-Based Clustering for Target Specific Stances: The Case of a Polarized Turkey

Data and Representation for Turkish Natural Language Inference

Morphological Word Segmentation on Agglutinative Languages for Neural Machine Translation

COVID-19 Tweets Classification Based on a Hybrid Word Embedding Method

Sentimental Analysis of Twitter Users from Turkish Content with Natural Language Processing

Computational intelligence and neuroscience

Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings

An Open, Extendible, and Fast Turkish Morphological Analyzer

Recent Advances in Natural Language Processing

Multi-Task Neural Model for Agglutinative Language Translation

Meeting of the Association for Computational Linguistics

A Comparison of Different Approaches to Document Representation in Turkish Language

Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi

#Turki$hTweets: A Benchmark Dataset for Turkish Text Correction


Evaluation functions for music/audio information retrieval/signal processing algorithms.

SDR - half-baked or well done?

A VARIANCE MODELING FRAMEWORK BASED ON VARIATIONAL AUTOENCODERS FOR SPEECH ENHANCEMENT

International Workshop on Machine Learning for Signal Processing

Audio-Based Music Structure Analysis: Current Trends, Open Challenges, and Applications

Transactions of the International Society for Music Information Retrieval

Evaluating Hierarchical Structure in Music Annotations

ReconVAT: A Semi-Supervised Automatic Music Transcription Framework for Low-Resource Real-World Data

DNN-Based Mask Estimation for Distributed Speech Enhancement in Spatially Unconstrained Microphone Arrays

Robust Unsupervised Audio-visual Speech Enhancement Using a Mixture of Variational Autoencoders

SDR -- Medium Rare with Fast Computations

Revisiting the Onsets and Frames Model with Additive Attention

DiffRoll: Diffusion-based Generative Music Transcription with Unsupervised Pretraining Capability


A PyTorch implementation of EfficientNet

EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks

EfficientNetV2: Smaller Models and Faster Training

Integer Quantization for Deep Learning Inference: Principles and Empirical Evaluation

Fashion IQ: A New Dataset Towards Retrieving Images by Natural Language Feedback

Modeling the Distribution of Normal Data in Pre-Trained Deep Features for Anomaly Detection

PSLA: Improving Audio Tagging With Pretraining, Sampling, Labeling, and Aggregation

Waste detection in Pomerania: non-profit project for detecting waste in environment.

Ensembled deep learning model outperforms human experts in diagnosing biliary atresia from sonographic gallbladder images

Image-Based Wheat Fungi Diseases Identification by Deep Learning

Automatic Sparse Connectivity Learning for Neural Networks


R package for performing 2-sample MR using MR-Base database

The MR-Base platform supports systematic causal inference across the human phenome

Recent Developments in Mendelian Randomization Studies

GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression

Gut Microbiota and Psychiatric Disorders: A Two-Sample Mendelian Randomization Study

Exploiting horizontal pleiotropy to search for causal pathways within a Mendelian randomization framework

Exploring a causal role of DNA methylation in the relationship between maternal vitamin B12 during pregnancy and child’s IQ at age 8, cognitive performance and educational attainment: a two-step Mendelian randomization study

Shortened Leukocyte Telomere Length Is Associated With Glycemic Progression in Type 2 Diabetes: A Prospective and Mendelian Randomization Analysis

Large-scale machine learning-based phenotyping significantly improves genomic discovery for optic nerve head morphology

Proteome-wide Mendelian randomization in global biobank meta-analysis reveals multi-ancestry drug targets for common diseases

SGLT2 Inhibition, Choline Metabolites, and Cardiometabolic Diseases: A Mediation Mendelian Randomization Study


Python library for quantum circuit rewriting and optimisation using the ZX-calculus

Graph-theoretic Simplification of Quantum Circuits with the ZX-calculus

Reducing the number of non-Clifford gates in quantum circuits

Open source software in quantum computing

PyZX: Large Scale Automated Diagrammatic Reasoning

CNOT circuit extraction for topologically-constrained quantum memories

There and back again: A circuit extraction tale

Quantum computing with Qiskit

A Near-Optimal Axiomatisation of ZX-Calculus for Pure Qubit Quantum Mechanics.

Completeness of Graphical Languages for Mixed States Quantum Mechanics

Kindergarden quantum mechanics graduates (...or how I learned to stop gluing LEGO together and love the ZX-calculus)


Interface to use R from Python

A transcriptional cross species map of pancreatic islet cells

Synaptotagmin 13 orchestrates pancreatic endocrine cell egression and islet morphogenesis

Possible Ribose Synthesis in Carbonaceous Planetesimals

Meteorites and the RNA World: Synthesis of Nucleobases in Carbonaceous Planetesimals and the Role of Initial Volatile Content

Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees

ebnm: An R Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families

ARULESPY: Exploring Association Rules and Frequent Itemsets in Python

arfpy: A python package for density estimation and generative modeling with adversarial random forests

Spaco: A comprehensive tool for coloring spatial data at single-cell resolution


Accelerated BLAST compatible local sequence aligner.

Altered gut microbial profile is associated with abnormal metabolism activity of Autism Spectrum Disorder

Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice

Structural and Functional Annotation of Eukaryotic Genomes with GenSAS

Methods in molecular biology (Clifton, N.J.)

A simple guide to de novo transcriptome assembly and annotation

A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism

Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese

Residual chlorine disrupts the microbial communities and spreads antibiotic resistance in freshwater

SARS-like Coronaviruses in Horseshoe Bats (Rhinolophus spp.) in Russia, 2020

Carbapenemases on the move: it’s good to be on ICEs

Lingguizhugan decoction attenuates diet-induced obesity and hepatosteatosis via gut microbiota


An open-source toolbox for action understanding based on PyTorch

Temporal Action Detection with Structured Segment Networks

Temporal Segment Networks for Action Recognition in Videos

Temporal Pyramid Network for Action Recognition

GluonCV and GluonNLP: Deep Learning in Computer Vision and Natural Language Processing

Torchreid: A Library for Deep Learning Person Re-Identification in Pytorch

Omni-sourced Webly-supervised Learning for Video Recognition

Unsupervised Visual Representation Learning by Tracking Patches in Video

Clothing Insulation Rate and Metabolic Rate Estimation for Individual Thermal Comfort Assessment in Real Life

Probing the State of the Art: A Critical Look at Visual Representation Evaluation

AutoVideo: An Automated Video Action Recognition System


Astraea: A Decentralized Blockchain Oracle

Blockchain for Cities—A Systematic Literature Review

Deconstructing Blockchains: A Comprehensive Survey on Consensus, Membership and Structure

Coded Merkle Tree: Solving Data Availability Attacks in Blockchains

Blockchain Consensus Algorithms: A Survey

SoK: Tools for Game Theoretic Models of Security for Cryptocurrencies

End-to-End Formal Verification of Ethereum 2.0 Deposit Smart Contract

An experiment in distributed Internet address management using blockchains

Auditable Credential Anonymity Revocation Based on Privacy-Preserving Smart Contracts

A Simple Single Slot Finality Protocol For Ethereum


Rapid fuzzy string matching in Python using various string metrics

MELHISSA: a multilingual entity linking architecture for historical press articles

ARQMath Lab: An Incubator for Semantic Formula Search in zbMATH Open?

BELB: a Biomedical Entity Linking Benchmark

Towards Automated Accessibility Report Generation for Mobile Apps

KGrEaT: A Framework to Evaluate Knowledge Graphs via Downstream Tasks

Train & Constrain: Phonologically Informed Tongue-Twister Generation
  from Topics and Paraphrases

BELHD: improving biomedical entity linking with homonym disambiguation


A Python library for audio.

Going In Style: Audio Backdoors Through Stylistic Transformations

Modelling black-box audio effects with time-varying feature modulation

Towards robust music source separation on loud commercial music

Speech Signal Improvement Using Causal Generative Diffusion Models

Neural modeling of magnetic tape recorders

Modulation Extraction for LFO-driven Audio Effects

Giving Robots a Voice: Human-in-the-Loop Voice Creation and open-ended Labeling

Proceedings of the CHI Conference on Human Factors in Computing Systems

Leveraging Neural Representations for Audio Manipulation


Python/C++ library for distribution power system analysis


Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Genomic profile – a possible diagnostic and prognostic marker in upper tract urothelial carcinoma

Whole-Exome Sequencing of HPV Positive Tonsillar and Base of Tongue Squamous Cell Carcinomas Reveals a Global Mutational Pattern along with Relapse-Specific Somatic Variants


Matlab toolbox for Geometry Processing.

Orientation-boosted Voxel Nets for 3D Object Recognition

ZoomOut: Spectral Upsampling for Efficient Shape Correspondence

Globally Consistent Normal Orientation for Point Clouds by Regularizing the Winding-Number Field

Global rigid registration of CT to video in laparoscopic liver surgery

International Journal of Computer Assisted Radiology and Surgery

Designing Volumetric Truss Structures

Information decomposition of multichannel EMG to map functional interactions in the distributed motor system

A Smoothness Energy without Boundary Distortion for Curved Surfaces

Complementary dynamics

Wavelet-based Heat Kernel Derivatives: Towards Informative Localized Shape Analysis

Non-Isometric Shape Matching via Functional Maps on Landmark-Adapted Bases


Data Reduction for Astronomy from Gemini Observatory North and South

Mining S-PLUS for Metal-poor Stars in the Milky Way

The Astrophysical Journal Supplement Series

SPLUS J142445.34–254247.1: An r-process–enhanced, Actinide-boost, Extremely Metal-poor Star Observed with GHOST

PASSAGES: The Wide-ranging, Extreme Intrinsic Properties of Planck-selected, Lensed Dusty Star-forming Galaxies

DRAGONS—A Quick Overview


This code can be used to generate simulated NIRCam, NIRISS, or FGS data

CEERS Key Paper. III. The Diversity of Galaxy Structure and Morphology at z = 3–9 with JWST

PDRs4All: A JWST Early Release Science Program on Radiative Feedback from Massive Stars

Publications of the Astronomical Society of the Pacific

Expectations of the size evolution of massive galaxies at 3 ≤ z ≤ 6 from the TNG50 simulation: the CEERS/JWST view

Performance of near-infrared high-contrast imaging methods with JWST from commissioning


Infrastructure for Machine Learning Guided Optimization (MLGO) in LLVM.

MLGO: a Machine Learning Guided Compiler Optimizations Framework

MLGOPerf: An ML Guided Inliner to Optimize Performance


PySwip is a Python - SWI-Prolog bridge enabling to query SWI-Prolog in your Python programs. It features an (incomplete) SWI-Prolog foreign language interface, a utility class that makes it easy querying with Prolog and also a Pythonic interface.

Prolog-based agnostic explanation module for structured pattern classification

Generating Data for Symbolic Language with Large Language Models

Neuro-Symbolic Integration Brings Causal and Reliable Reasoning Proofs

Interactive Text Graph Mining with a Prolog-Based Dialog Engine

Theory and Practice of Logic Programming

Automated benchmark network diversification for realistic attack simulation with application to moving target defense

International Journal of Information Security

A Computational Model of the Institutional Analysis and Development Framework.

Dependency-based Text Graphs for Keyphrase and Summary Extraction with Applications to Interactive Content Retrieval

Enabling Game-Theoretical Analysis of Social Rules

International Conference of the Catalan Association for Artificial Intelligence

Arithmetic Reasoning with LLM: Prolog Generation & Permutation


The official repository of the Eesen project

EESEN: End-to-End Speech Recognition using Deep RNN Models and WFST-based Decoding

First-Pass Large Vocabulary Continuous Speech Recognition using Bi-Directional Recurrent DNNs

Comparison of Decoding Strategies for CTC Acoustic Models

Comparing the Max and Noisy-Or Pooling Functions in Multiple Instance Learning for Weakly Supervised Sequence Learning Tasks

When CTC Training Meets Acoustic Landmarks

Towards Real-time Mispronunciation Detection in Kids' Speech


Check out the new game server:

Google Research Football: A Novel Reinforcement Learning Environment

Neighborhood Cognition Consistent Multi-Agent Reinforcement Learning

GCS: Graph-based Coordination Strategy for Multi-Agent Reinforcement Learning

Deep Reinforcement Learning

From Explicit Communication to Tacit Cooperation:A Novel Paradigm for Cooperative MARL

Learning to Collaborate by Grouping: a Consensus-oriented Strategy for Multi-agent Reinforcement Learning

Learning Multi-Agent Action Coordination via Electing First-Move Agent

Quantifying Zero-shot Coordination Capability with Behavior Preferring Partners

Soft Q Network

Boosting Studies of Multi-Agent Reinforcement Learning on Google Research Football Environment: the Past, Present, and Future


Lightweight, modular, and extensible library for functional programming.

Simplicitly: foundations and applications of implicit function types

Symposium on Principles of Programming Languages

Functional probabilistic programming for scalable Bayesian modelling


Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermal engineering plants such as power plants, district heating systems or heat pumps.


⚡ Energy consumption metrology agent. Let "scaph" dive and bring back the metrics that will help you make your systems and applications more sustainable !

EnergAt: Fine-Grained Energy Attribution for Multi-Tenancy

Proceedings of the 2nd Workshop on Sustainable Computer Systems

Potentials of Green Coding -- Findings and Recommendations for Industry,
  Education and Science -- Extended Paper


Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships

matchms - processing and similarity evaluation of mass spectrometry data

Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectrum Alignment For Discovery of Structurally Related Molecules


COIN-OR Branch-and-Cut solver

Learning Multi-Agent Coordination for Enhancing Target Coverage in Directional Sensor Networks

An efficient genotyper and star-allele caller for pharmacogenomics

A Three-Stage Model to Manage Energy Communities, Share Benefits and Provide Local Grid Services

Ecological Robustness-Oriented Grid Network Design for Resilience Against Multiple Hazards

ROC++: Robust Optimization in C++

Mixed-Integer Optimization for Bio-Inspired Robust Power Network Design

Benchmarking Neuromorphic Hardware and Its Energy Expenditure

Fair Allocation of Indivisible Items with Conflict Graphs

Preprocessing and cutting planes with conflict graphs

Optimal Scheduling for Laboratory Automation of Life Science Experiments with Time Constraints


Go implementation of Ethereum proof of stake

Resource Analysis of Ethereum 2.0 Clients

Ethereum Proof-of-Stake under Scrutiny

Security Review of Ethereum Beacon Clients

Multilayer Environment and Toolchain for Holistic NetwOrk Design and Analysis

Toward Scalable Docker-Based Emulations of Blockchain Networks for
  Research and Development

FIRST: FrontrunnIng Resilient Smart ConTracts

Securing Blockchain Systems: A Novel Collaborative Learning Framework to Detect Attacks in Transactions and Smart Contracts

Unconditionally Safe Light Client


Ecosystem Demography Model

The biophysics, ecology, and biogeochemistry of functionally diverse, vertically- and horizontally-heterogeneous ecosystems: the Ecosystem Demography Model, version 2.2 — Part 1: Model description

The biophysics, ecology, and biogeochemistry of functionally diverse, vertically and horizontally heterogeneous ecosystems: the Ecosystem Demography model, version 2.2 – Part 2: Model evaluation for tropical South America

The Central Amazon Biomass Sink Under Current and Future Atmospheric CO2: Predictions From Big-Leaf and Demographic Vegetation Models

Journal of Geophysical Research: Biogeosciences

The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling

Remote sensing-based forest modeling reveals positive effects of functional diversity on productivity at local spatial scale

Climate Drives Modeled Forest Carbon Cycling Resistance and Resilience in the Upper Great Lakes Region, USA

Journal of geophysical research. Biogeosciences

Reducing uncertainty of high-latitude ecosystem models through identification of key parameters


Simple HTTP and REST client for Ruby, inspired by microframework syntax for specifying actions.

Towards Measuring Supply Chain Attacks on Package Managers for Interpreted Languages

Measuring and Preventing Supply Chain Attacks on Package Managers.


spellchecking library for python

Improving Grammatical Error Correction with Data Augmentation by Editing Latent Representation

International Conference on Computational Linguistics

Context-Aware Social Media User Sentiment Analysis

Spelling Error Correction Using a Nested RNN Model and Pseudo Training Data

Open Information Extraction from Question-Answer Pairs

Context-Sensitive Malicious Spelling Error Correction

HateMM: A Multi-Modal Dataset for Hate Video Classification

“Are you kidding me?”: Detecting Unpalatable Questions on Reddit

Conference of the European Chapter of the Association for Computational Linguistics

Out of vocabulary words decrease, running texts prevail and hashtags coalesce: Twitter as an evolving sociolinguistic system

Exploring Natural Language Processing in Model-To-Model Transformations

A Syntax-Guided Grammatical Error Correction Model with Dependency Tree Correction


Provides analysis for the MPAS components of E3SM

Statistical Generation of Ocean Forcing With Spatiotemporal Variability for Ice Sheet Models


Algebraic Multigrid Solvers in Python

Learning Algebraic Multigrid Using Graph Neural Networks

Mosaic flows: A transferable deep learning framework for solving PDEs on unseen domains

Poisson CNN: Convolutional neural networks for the solution of the Poisson equation on a Cartesian mesh

Surface multigrid via intrinsic prolongation

Attraction-Repulsion Spectrum in Neighbor Embeddings

Deep Multigrid: learning prolongation and restriction matrices

Efficient Low-Order Refined Preconditioners for High-Order Matrix-Free Continuous and Discontinuous Galerkin Methods

AMGNET: multi-scale graph neural networks for flow field prediction

Scalable atomistic simulations of quantum electron transport using empirical pseudopotentials

PyMatting: A Python Library for Alpha Matting


Python Audio Analysis Library: Feature Extraction, Classification, Segmentation and Applications

pyAudioAnalysis: An Open-Source Python Library for Audio Signal Analysis

Emotion Based Hate Speech Detection using Multimodal Learning

Top-1 CORSMAL Challenge 2020 Submission: Filling Mass Estimation Using Multi-modal Observations of Human-robot Handovers

A multimodal adaptive dialogue manager for depressive and anxiety disorder screening: a Wizard-of-Oz experiment

A novel multi-layer modular approach for real-time fuzzy-identification of gravitational-wave signals

Audio Acoustic Features Based Tagging and Comparative Analysis of its Classifications

International Conference on Contemporary Computing

Can Plants Sense Humans? Using Plants as Biosensors to Detect the Presence of Eurythmic Gestures

Automatic Speech Recognition of Low-Resource Languages Based on Chukchi

Seamless Multimodal Biometrics for Continuous Personalised Wellbeing Monitoring


Brave's Rust-based adblock engine

Who Funds Misinformation? A Systematic Analysis of the Ad-related Profit Routines of Fake News Sites

Blocked or Broken? Automatically Detecting When Privacy Interventions Break Websites


(deprecated) The fast, light, and robust client for the Ethereum mainnet.

COVID-19 Antibody Test/Vaccination Certification: There's an App for That

A Survey on Vulnerabilities of Ethereum Smart Contracts

Prism Removes Consensus Bottleneck for Smart Contracts

Evolution of automated weakness detection in Ethereum bytecode: a comprehensive study

VM Matters: A Comparison of WASM VMs and EVMs in the Performance of Blockchain Smart Contracts


Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation

Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis

Graphia: A platform for the graph-based visualisation and analysis of complex data

MichiGAN: sampling from disentangled representations of single-cell data using generative adversarial networks

Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

Heightened apoptotic priming of vascular cells across tissues and life span predisposes them to cancer therapy–induced toxicities

An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data


Easily compute clip embeddings and build a clip retrieval system with them

LAION-5B: An open large-scale dataset for training next generation image-text models

Multimodal datasets: misogyny, pornography, and malignant stereotypes

CLIPstyler: Image Style Transfer with a Single Text Condition

Effective Data Augmentation With Diffusion Models

OpenShape: Scaling Up 3D Shape Representation Towards Open-World Understanding

Reconstructing the Mind's Eye: fMRI-to-Image with Contrastive Learning and Diffusion Priors

HRS-Bench: Holistic, Reliable and Scalable Benchmark for Text-to-Image Models

Can Machines Help Us Answering Question 16 in Datasheets, and In Turn Reflecting on Inappropriate Content?

Rickrolling the Artist: Injecting Backdoors into Text Encoders for Text-to-Image Synthesis

Dataset Interfaces: Diagnosing Model Failures Using Controllable Counterfactual Generation


Automatically Track Radiosonde Launches using RTLSDR


Massively parallel rigidbody physics simulation on accelerator hardware.

Isaac Gym: High Performance GPU-Based Physics Simulation For Robot Learning

Brax -- A Differentiable Physics Engine for Large Scale Rigid Body Simulation

Transferring Dexterous Manipulation from GPU Simulation to a Remote Real-World TriFinger

Grasp'D: Differentiable Contact-rich Grasp Synthesis for Multi-fingered Hands

EvoJAX: Hardware-Accelerated Neuroevolution

Proceedings of the Genetic and Evolutionary Computation Conference Companion

VMAS: A Vectorized Multi-Agent Simulator for Collective Robot Learning

TorchRL: A data-driven decision-making library for PyTorch

Benchmarking Offline Reinforcement Learning on Real-Robot Hardware

Blocks Assemble! Learning to Assemble with Large-Scale Structured Reinforcement Learning

JaxMARL: Multi-Agent RL Environments in JAX


Workbench for biodiversity informatics.

The Chalcidoidea bush of life – a massive radiation blurred by mutational saturation

TaxonWorks

Biodiversity Information Science and Standards

TaxonWorks as a Tool for Managing Large Biodiversity Projects


Distributed Graph Database

The Train Benchmark: cross-technology performance evaluation of continuous model queries

Weaver: A High-Performance, Transactional Graph Database Based on Refinable Timestamps

An automatically created novel bug dataset and its validation in bug prediction

Fuzzy Random Walkers with Second Order Bounds: An Asymmetric Analysis

Study on Resource Efficiency of Distributed Graph Processing

Modeling Corruption in Eventually-Consistent Graph Databases

Relationships between design problem agglomerations and concerns having types and domains of software as transverse dimensions

Journal of the Brazilian Computer Society


A package for the sparse identification of nonlinear dynamical systems from data

Discovering governing equations from data by sparse identification of nonlinear dynamical systems

Proceedings of the National Academy of Sciences of the United States of America

Sparse Identification of Nonlinear Dynamics with Control (SINDYc)

chirps: API Client for the CHIRPS Precipitation Data in R

Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control

A unified sparse optimization framework to learn parsimonious physics-informed models from data

PySINDy: A comprehensive Python package for robust sparse system identification

Discovery of Physics From Data: Universal Laws and Discrepancies

PySINDy: A Python package for the Sparse Identification of Nonlinear Dynamics from Data

A Toolkit for Data-Driven Discovery of Governing Equations in High-Noise Regimes

Data-driven discovery and extrapolation of parameterized pattern-forming dynamics


Fast Holographic Deconvolution

Hydrogen Epoch of Reionization Array (HERA)

FIRST SEASON MWA EOR POWER SPECTRUM RESULTS AT REDSHIFT 7

Improving the Epoch of Reionization Power Spectrum Results from Murchison Widefield Array Season 1 Observations

Empirical covariance modeling for 21 cm power spectrum estimation: A method demonstration and new limits from early Murchison Widefield Array 128-tile data

Physical review. D. Particles, fields, gravitation, and cosmology/Physical review. D, Particles, fields, gravitation, and cosmology

A Simplified, Lossless Reanalysis of PAPER-64

First Season MWA Phase II Epoch of Reionization Power Spectrum Results at Redshift 7

THE IMPORTANCE OF WIDE-FIELD FOREGROUND REMOVAL FOR 21 cm COSMOLOGY: A DEMONSTRATION WITH EARLY MWA EPOCH OF REIONIZATION OBSERVATIONS

THE MURCHISON WIDEFIELD ARRAY 21 cm POWER SPECTRUM ANALYSIS METHODOLOGY

Fundamental Limitations on the Calibration of Redundant 21 cm Cosmology Instruments and Implications for HERA and the SKA

The Challenges of Low-Frequency Radio Polarimetry: Lessons from the Murchison Widefield Array

Publications of the Astronomical Society of Australia


Official elastix repository

Accurate Localization of Linear Probe Electrode Arrays across Multiple Brains

Purkinje Cell Activity Determines the Timing of Sensory-Evoked Motor Initiation

M2aia—Interactive, fast, and memory-efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data

larvalign: Aligning Gene Expression Patterns from the Larval Brain of Drosophila melanogaster

Axonal and Dendritic Morphology of Excitatory Neurons in Layer 2/3 Mouse Barrel Cortex Imaged Through Whole-Brain Two-Photon Tomography and Registered to a Digital Brain Atlas

Unbiased quantification of the spatial distribution of murine cells using point pattern analysis


An easy-to-use federated learning platform

FederatedScope: A Flexible Federated Learning Platform for Heterogeneity

FederatedScope-GNN: Towards a Unified, Comprehensive and Efficient Package for Federated Graph Learning

pFL-Bench: A Comprehensive Benchmark for Personalized Federated Learning

FederatedScope-LLM: A Comprehensive Package for Fine-tuning Large Language Models in Federated Learning

Efficient Personalized Federated Learning via Sparse Model-Adaptation

Revisiting Personalized Federated Learning: Robustness Against Backdoor Attacks

FedHPO-B: A Benchmark Suite for Federated Hyperparameter Optimization

Federated Full-Parameter Tuning of Billion-Sized Language Models with Communication Cost under 18 Kilobytes

A Benchmark for Federated Hetero-Task Learning

Collaborating Heterogeneous Natural Language Processing Tasks via Federated Learning


efficient tools for LiDAR processing

Reconstruction and Efficient Visualization of Heterogeneous 3D City Models

Interactive Visualization of Terascale Data in the Browser: Fact or Fiction?

Automatic Annotation of Airborne Images by Label Propagation Based on a Bayesian-CRF Model

Space- and Time-Efficient Storage of LiDAR Point Clouds

String Processing and Information Retrieval


Siphon - A collection of Python utilities for retrieving atmospheric and oceanic data from remote sources, focusing on being able to retrieve data from Unidata data technologies, such as the THREDDS data server.

Advanced Cyberinfrastructure to Enable Search of Big Climate Datasets in THREDDS

ISPRS International Journal of Geo-Information


Generalized Random Forests

Generalized Random Forests

Estimating Treatment Effects with Causal Forests: An Application

Conformal Inference of Counterfactuals and Individual Treatment Effects

Local Linear Forests

Estimating heterogeneous treatment effects with right-censored data via causal survival forests

A machine learning approach to the digitalization of bank customers: Evidence from random and causal forests

Learning Optimal Prescriptive Trees from Observational Data

Design and Evaluation of Personalized Free Trials

Using causal forests to assess heterogeneity in cost-effectiveness analysis

When do Words Matter? Understanding the Impact of Lexical Choice on Audience Perception using Individual Treatment Effect Estimation


Rapid large-scale prokaryote pan genome analysis

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak

Diversity of the Genomes and Neurotoxins of Strains of Clostridium botulinum Group I and Clostridium sporogenes Associated with Foodborne, Infant and Wound Botulism

Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America

Multi-Epitope Vaccine for Monkeypox Using Pan-Genome and Reverse Vaccinology Approaches

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Pan-Genomic Analysis of Clostridium botulinum Group II (Non-Proteolytic C. botulinum) Associated with Foodborne Botulism and Isolated from the Environment

Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning

Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov.

Comparative genomics and molecular epidemiology of colistin-resistant Acinetobacter baumannii

Computational and structural biotechnology journal

Comparative Genomic Analysis of the Foodborne Pathogen Burkholderia gladioli pv. cocovenenans Harboring a Bongkrekic Acid Biosynthesis Gene Cluster


Software, firmware, and hardware designs for Ubertooth

Handoff All Your Privacy: A Review of Apple's Bluetooth Low Energy Continuity Protocol

All Your Bulbs Are Belong to Us: Investigating the Current State of Security in Connected Lighting Systems

A State-of-the-Art Review on the Security of Mainstream IoT Wireless PAN Protocol Stacks

BLURtooth: Exploiting Cross-Transport Key Derivation in Bluetooth Classic and Bluetooth Low Energy

IoTScanner: Detecting and Classifying Privacy Threats in IoT Neighborhoods.


WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

Feasibility and utility of applications of the common data model to multiple, disparate observational health databases

Journal of the American Medical Informatics Association : JAMIA

Transforming and evaluating the UK Biobank to the OMOP Common Data Model for COVID-19 research and beyond

Using the Data Quality Dashboard to Improve the EHDEN Network

German Claims Data for Real-World Research: Content Coverage Evaluation in OMOP CDM

Studies in health technology and informatics


Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models

Introducing decorated HODs: modelling assembly bias in the galaxy–halo connection

Monthly Notices of the Royal Astronomical Society

Forward Modeling of Large-scale Structure: An Open-source Approach with Halotools

The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: N-body mock challenge for galaxy clustering measurements

Generating synthetic cosmological data with GalSampler

The Outer Stellar Mass of Massive Galaxies: A Simple Tracer of Halo Mass with Scatter Comparable to Richness and Reduced Projection Effects

A Short Research Note on Calculating Exact Distribution Functions and Random Sampling for the 3D NFW Profile

An Empirical Model For Intrinsic Alignments: Insights From Cosmological Simulations


A modular QUIC stack designed primarily for H2O

Revisiting QUIC attacks: a comprehensive review on QUIC security and a hands-on study

Exploring Proxying QUIC and HTTP/3 for Satellite Communication


Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors

Toward a Reinforcement Learning Environment Toolbox for Intelligent Electric Motor Control

IEEE transactions on neural networks and learning systems

Towards a Reinforcement Learning Environment Toolbox for Intelligent Electric Motor Control

gym-electric-motor (GEM): A Python toolbox for the simulation of electric drive systems

Meta-Reinforcement-Learning-Based Current Control of Permanent Magnet Synchronous Motor Drives for a Wide Range of Power Classes


Wavelet scattering transforms in Python with GPU acceleration

Kymatio: Scattering Transforms in Python

Privacy-Aware Compression for Federated Data Analysis

Mesostructures: Beyond Spectrogram Loss in Differentiable Time-Frequency Analysis

Deep Scattering Network with Max-pooling


rllab is a framework for developing and evaluating reinforcement learning algorithms, fully compatible with OpenAI Gym.

Benchmarking Deep Reinforcement Learning for Continuous Control

Deep Reinforcement Learning: An Overview

Parameter Space Noise for Exploration

Reproducibility of Benchmarked Deep Reinforcement Learning Tasks for Continuous Control

Algorithmic Framework for Model-based Deep Reinforcement Learning with Theoretical Guarantees

Deep Reinforcement Learning

Stein Variational Policy Gradient

rlpyt: A Research Code Base for Deep Reinforcement Learning in PyTorch

An Improved Analysis of (Variance-Reduced) Policy Gradient and Natural Policy Gradient Methods

Policy Optimization as Wasserstein Gradient Flows


Easy-to-use,Modular and Extendible package of deep-learning based CTR models .

Wide & Deep Learning for Recommender Systems

Deep Neural Networks for YouTube Recommendations

PROCEEDINGS OF THE 10TH ACM CONFERENCE ON RECOMMENDER SYSTEMS (RECSYS'16)

An Overview of Multi-Task Learning in Deep Neural Networks

DeepFM: A Factorization-Machine based Neural Network for CTR Prediction

Deep Interest Network for Click-Through Rate Prediction

Neural Factorization Machines for Sparse Predictive Analytics

Deep & Cross Network for Ad Click Predictions

xDeepFM: Combining Explicit and Implicit Feature Interactions for Recommender Systems

Deep Interest Evolution Network for Click-Through Rate Prediction

Modeling Task Relationships in Multi-task Learning with Multi-gate Mixture-of-Experts


Open workflow definitions for genomic analysis from MGI at WUSM.

Failure to Detect Mutations in U2AF1 due to Changes in the GRCh38 Reference Sequence

Distinct clonal identities of B-ALLs arising after lenolidomide therapy for multiple myeloma

Unmasking Intra-Tumoral Heterogeneity and Clonal Evolution in NF1-MPNST

Genomic landscape of TP53 -mutated myeloid malignancies.

medRxiv : the preprint server for health sciences

Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer

Melanoma in a patient with DNMT3A overgrowth syndrome

Somatic Dnmt3a inactivation leads to slow, canonical DNA methylation loss in murine hematopoietic cells


Radar Software Toolkit (RST)

SuperDARN Observations During Geomagnetic Storms, Geomagnetically Active Times, and Enhanced Solar Wind Driving

Journal of Geophysical Research: Space Physics

The Relationship Between Large Scale Thermospheric Density Enhancements and the Spatial Distribution of Poynting Flux

Co-located Observations of the E and F-region Thermosphere during a Substorm

Identifying ground scatter and ionospheric scatter signals by using their fine structure at Ekaterinburg decametre coherent radar


Automatic program repair for Java with generate-and-validate techniques :v::v:: jGenProg (2014) - jMutRepair (2016) - jKali  (2016) - DeepRepair (2017) - Cardumen (2018) - 3sfix (2018)

A Comprehensive Study of Automatic Program Repair on the QuixBugs Benchmark

Ultra-Large Repair Search Space with Automatically Mined Templates: The Cardumen Mode of Astor

Symposium on Search Based Software Engineering

Automatic Repair of Real Bugs: An Experience Report on the Defects4J Dataset

Astor: Exploring the Design Space of Generate-and-Validate Program Repair beyond GenProg

ASTOR: Evolutionary Automatic Software Repair for Java

Revisiting ssFix for Better Program Repair


NLP, before and after spaCy

SGRank: Combining Statistical and Graphical Methods to Improve the State of the Art in Unsupervised Keyphrase Extraction

Joint Conference on Lexical and Computational Semantics

Bootstrap Your Own Skills: Learning to Solve New Tasks with Large Language Model Guidance

Artificial intelligence for health message generation: an empirical study using a large language model (LLM) and prompt engineering

Theme-weighted Ranking of Keywords from Text Documents using Phrase Embeddings

TextDescriptives: A Python package for calculating a large variety of metrics from text

Analyzing Digital Evidence From a Telemental Health Platform to Assess Complex Psychological Responses to the COVID-19 Pandemic: Content Analysis of Text Messages

The effect of source disclosure on evaluation of AI-generated messages: A two-part study

Institutional embeddedness and the language of accountability: Evidence from 20 years of Canadian public audit reports

A Framework To Improve User Story Sets Through Collaboration

Legal Terminology Extraction with the Termolator

Proceedings of the Natural Legal Language Processing Workshop 2021


Dai Stablecoin System

Clockwork Finance: Automated Analysis of Economic Security in Smart Contracts

A Blockchain Ontology for DApps Development

CroCoDai: A Stablecoin for Cross-Chain Commerce


EasyList filter subscription (EasyList, EasyPrivacy, EasyList Cookie, Fanboy's Social/Annoyances/Notifications Blocking List)

Who Filters the Filters: Understanding the Growth, Usefulness and Efficiency of Crowdsourced Ad Blocking

SpeedReader: Reader Mode Made Fast and Private

Actions speak louder than words: Semi-supervised learning for browser fingerprinting detection

Comparing Large-Scale Privacy and Security Notifications

Proceedings on Privacy Enhancing Technologies

Blocked or Broken? Automatically Detecting When Privacy Interventions Break Websites

An iterative technique to identify browser fingerprinting scripts

Quantifying Carbon Emissions due to Online Third-Party Tracking

Manifest V3 Unveiled: Navigating the New Era of Browser Extensions


The core library of differential privacy algorithms powering the OpenDP Project.

Precision-based attacks and interval refining: how to break, then fix, differential privacy on finite computers

Widespread Underestimation of Sensitivity in Differentially Private Libraries and How to Fix It

Lessons Learned: Surveying the Practicality of Differential Privacy in the Industry

Differentially Private Sparse Vectors with Low Error, Optimal Space, and Fast Access

Differentially Private Release of Israel's National Registry of Live
  Births

Sotto Voce: Federated Speech Recognition with Differential Privacy Guarantees

Elephants Do Not Forget: Differential Privacy with State Continuity for
  Privacy Budget

Diverse Community Data for Benchmarking Data Privacy Algorithms

Differentially Private Tabular Data Synthesis using Large Language Models


Retrieval and Retrieval-augmented LLMs

BGE M3-Embedding: Multi-Lingual, Multi-Functionality, Multi-Granularity
  Text Embeddings Through Self-Knowledge Distillation

Soaring from 4K to 400K: Extending LLM's Context with Activation Beacon

Retrieve Anything To Augment Large Language Models

ChatHaruhi: Reviving Anime Character in Reality via Large Language Model

Making Large Language Models A Better Foundation For Dense Retrieval

LM-Cocktail: Resilient Tuning of Language Models via Model Merging

Arctic-Embed: Scalable, Efficient, and Accurate Text Embedding Models

MLVU: A Comprehensive Benchmark for Multi-Task Long Video Understanding

Extending Llama-3's Context Ten-Fold Overnight

Boosting Conversational Question Answering with Fine-Grained Retrieval-Augmentation and Self-Check


Android ViewServer and ADB client

Translating Video Recordings of Mobile App Usages into Replayable Scenarios

International Conference on Software Engineering

"Are you home alone?" "Yes" Disclosing Security and Privacy Vulnerabilities in Alexa Skills

The importance of granularity in multiobjective optimization of mobile cloud hybrid applications

Transactions on Emerging Telecommunications Technologies

Translating Video Recordings of Complex Mobile App UI Gestures into Replayable Scenarios

Responding to Targeted Stealthy Attacks on Android Using Timely-Captured Memory Dumps

PoPL: Proof-of-Presence and Locality, or How to Secure Financial Transactions on Your Smartphone

AppQ: Warm-starting App Recommendation Based on View Graphs

Towards Efficient Record and Replay: A Case Study in WeChat

VEDRANDO: A Novel Way to Reveal Stealthy Attack Steps on Android through Memory Forensics

Detection of SSL/TLS Implementation Errors in Android Applications

Gazi Üniversitesi Fen Bilimleri Dergisi Part C: Tasarım ve Teknoloji