An analysis of concurrency control protocols for in-memory databases with CCBench

Releasing Locks As Early As You Can: Reducing Contention of Hotspots by Violating Two-Phase Locking

Polynesia: Enabling Effective Hybrid Transactional/Analytical Databases with Specialized Hardware/Software Co-Design

Polynesia: Enabling High-Performance and Energy-Efficient Hybrid Transactional/Analytical Databases with Hardware/Software Co-Design

Taurus: Lightweight Parallel Logging for In-Memory Database Management Systems (Extended Version)

The full story of 1000 cores


Tigramite is a python package for causal inference with a focus on time series data. The Tigramite documentation is at

Detecting and quantifying causal associations in large nonlinear time series datasets

Conditional independence testing based on a nearest-neighbor estimator of conditional mutual information

Discovering contemporaneous and lagged causal relations in autocorrelated nonlinear time series datasets

High-recall causal discovery for autocorrelated time series with latent confounders

Estimating causal networks in biosphere–atmosphere interaction with the PCMCI approach

Reconstructing regime-dependent causal relationships from observational time series

Chaos An Interdisciplinary Journal of Nonlinear Science

Necessary and sufficient graphical conditions for optimal adjustment sets in causal graphical models with hidden variables

A Survey on Causal Discovery Methods for I.I.D. and Time Series Data

CUTS: Neural Causal Discovery from Irregular Time-Series Data

Dynamic contextual influences on social motivation and behavior in schizophrenia: a case-control network analysis


An Image is Worth One Word: Personalizing Text-to-Image Generation using Textual Inversion

A taxonomy of prompt modifiers for text-to-image generation

Prompting AI Art: An Investigation into the Creative Skill of Prompt Engineering

A Prompt Log Analysis of Text-to-Image Generation Systems

Generative Disco: Text-to-Video Generation for Music Visualization

HanDiffuser: Text-to-Image Generation With Realistic Hand Appearances

Pathway to Future Symbiotic Creativity


A visual exploratory tool on correlation matrix

Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota

Depression, anxiety, and burnout among medical students and residents of a medical school in Nepal: a cross-sectional study

Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage

Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals

Assessing the spread of COVID-19 in Brazil: Mobility, morbidity and social vulnerability

Age-severity matched cytokine profiling reveals specific signatures in Covid-19 patients

Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold

Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19

Serological analysis reveals an imbalanced IgG subclass composition associated with COVID-19 disease severity

Resistance to targeted therapies as a multifactorial, gradual adaptation to inhibitor specific selective pressures


The Shine compiler for the RISE language

Sketch-Guided Equality Saturation: Scaling Equality Saturation to Complex Optimizations in Languages with Bindings

Sketch-Guided Equality Saturation: Scaling Equality Saturation to Complex Optimizations of Functional Programs

Guided Equality Saturation

Proceedings of the ACM on programming languages

A Domain-Extensible Compiler with Controllable Automation of Optimisations

Latent Idiom Recognition for a Minimalist Functional Array Language using Equality Saturation


A tool for the spatial analysis of diversity


3D force-directed graph component using ThreeJS/WebGL

VICE: Visual Identification and Correction of Neural Circuit Errors

WikiDataSets: Standardized sub-graphs from Wikidata

How To Quantify a Genetic Firewall? A Polarity‐Based Metric for Genetic Code Engineering

Chembiochem : a European journal of chemical biology

Contributions to Representation Learning with Graph Autoencoders and Applications to Music Recommendation


Benchmarks for Low Latency (Streaming) solutions including Apache Storm, Apache Spark, Apache Flink, ...

Phoebe: QoS-Aware Distributed Stream Processing through Anticipating Dynamic Workloads

Raw Filtering of JSON Data on FPGAs

Cloudprofiler: TSC-based inter-node profiling and high-throughput data ingestion for cloud streaming workloads


OpenChat: Advancing Open-source Language Models with Imperfect Data

Self-Instruct: Aligning Language Models with Self-Generated Instructions

OpenChat: Advancing Open-source Language Models with Mixed-Quality Data

#InsTag: Instruction Tagging for Analyzing Supervised Fine-tuning of Large Language Models

Learning Rates as a Function of Batch Size: A Random Matrix Theory Approach to Neural Network Training

Automatic Pair Construction for Contrastive Post-training

Scaling Down to Scale Up: A Cost-Benefit Analysis of Replacing OpenAI's LLM with Open Source SLMs in Production

Instruction Tuning with Human Curriculum


Edgeless RT is an SDK and a runtime for Intel SGX. It combines top-notch Go support with simplicity, robustness and a small TCB. Developing confidential microservices has never been easier! C++17 and Rust (experimental) are also supported.

Understanding TEE Containers, Easy to Use? Hard to Trust

SoK: A Systematic Review of TEE Usage for Developing Trusted Applications

Proceedings of the 18th International Conference on Availability, Reliability and Security


KaHyPar (Karlsruhe Hypergraph Partitioning) is a multilevel hypergraph partitioning framework providing direct k-way and recursive bisection based partitioning algorithms that compute solutions of very high quality.

High-Quality Hypergraph Partitioning

Improving Coarsening Schemes for Hypergraph Partitioning by Exploiting Community Structure

Network Flow-Based Refinement for Multilevel Hypergraph Partitioning

Memetic Multilevel Hypergraph Partitioning

Advanced Flow-Based Multilevel Hypergraph Partitioning

Evolutionary n -Level Hypergraph Partitioning With Adaptive Coarsening

IEEE Transactions on Evolutionary Computation

Multilevel Acyclic Hypergraph Partitioning

Multilevel Hypergraph Partitioning with Vertex Weights Revisited

K-SpecPart: Supervised Embedding Algorithms and Cut Overlay for Improved Hypergraph Partitioning


[ICLR'24 spotlight] An open platform for training, serving, and evaluating large language model for tool learning.

ToolLLM: Facilitating Large Language Models to Master 16000+ Real-world APIs

Tool Learning with Foundation Models

StableToolBench: Towards Stable Large-Scale Benchmarking on Tool
  Learning of Large Language Models

LLMs in the Imaginarium: Tool Learning through Simulated Trial and Error


The implementation of DeBERTa

DeBERTa: Decoding-enhanced BERT with Disentangled Attention

DeBERTaV3: Improving DeBERTa using ELECTRA-Style Pre-Training with Gradient-Disentangled Embedding Sharing

Performance-Efficiency Trade-offs in Unsupervised Pre-training for Speech Recognition

Z-Code++: A Pre-trained Language Model Optimized for Abstractive Summarization

LoSparse: Structured Compression of Large Language Models based on Low-Rank and Sparse Approximation

Deep Lexical Hypothesis: Identifying personality structure in natural language

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

ConnPrompt: Connective-cloze Prompt Learning for Implicit Discourse Relation Recognition

International Conference on Computational Linguistics

Bringing order into the realm of Transformer-based language models for artificial intelligence and law

SocioProbe: What, When, and Where Language Models Learn about Sociodemographics


Finds SNP sites from a multi-FASTA alignment file

Genome-Wide Variation in Potyviruses

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

RdRp mutations are associated with SARS-CoV-2 genome evolution

Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation

A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification

Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes

Molecular characterization of carbapenem-resistant and virulent plasmids in Klebsiella pneumoniae from patients with bloodstream infections in China

Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation

Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae


PyGame Learning Environment (PLE) -- Reinforcement Learning Environment in Python.

A Review of Cooperative Multi-Agent Deep Reinforcement Learning

Learning and Planning in Average-Reward Markov Decision Processes

Deep Reinforcement Learning using Capsules in Advanced Game Environments

Efficient Reinforcement Learning from Demonstration via Bayesian Network-Based Knowledge Extraction

Computational intelligence and neuroscience

Object-Oriented Dynamics Learning through Multi-Level Abstraction

Stabilizing Q Learning Via Soft Mellowmax Operator

Scale-invariant temporal history (SITH): optimal slicing of the past in an uncertain world

EVOTER: Evolution of Transparent Explainable Rule-sets

Decomposing the Prediction Problem; Autonomous Navigation by neoRL Agents


Transform ML models into a native code (Java, C, Python, Go, JavaScript, Visual Basic, C#, R, PowerShell, PHP, Dart, Haskell, Ruby, F#, Rust) with zero dependencies

TinyML Platforms Benchmarking

Introducing the Monitoring Equipment Mask Environment

Are Microcontrollers Ready for Deep Learning-Based Human Activity Recognition?

An Open-Source Tool for Classification Models in Resource-Constrained Hardware

Lightweight On-Device Detection of Android Malware Based on the Koodous Platform and Machine Learning

Optimization of Lightweight Malware Detection Models For AIoT Devices


Solve automatic numerical differentiation problems in one or more variables.

A statistical framework for generating microstructures of two-phase random materials: application to fatigue analysis

A robust and efficient algorithm to find profile likelihood confidence intervals

Comparative Analysis of Behavioral Models for Adaptive Learning in Changing Environments

Backtracking New Q-Newton's method: a good algorithm for optimization and solving systems of equations

A fast and simple modification of Newton's method helping to avoid saddle points

New Q-Newton's method meets Backtracking line search: good convergence guarantee, saddle points avoidance, quadratic rate of convergence, and easy implementation

Forecasts for cosmological measurements based on the angular power spectra of AGN and clusters of galaxies in the SRG/eROSITA all-sky survey


The official GitHub page for the survey paper "A Survey of Large Language Models".

A Survey of Large Language Models

A Survey of Reasoning with Foundation Models

Toward an Ethics of AI Belief


Library for Low-Frequency

The LOFAR LBA Sky Survey I. survey description and preliminary data
  release

Magnetic fields and relativistic electrons fill entire galaxy cluster

Galaxy clusters enveloped by vast volumes of relativistic electrons

The LOFAR LBA Sky Survey II. First data release

The LOFAR LBA Sky Survey: Deep Fields I. The Boötes Field

Particle re-acceleration and diffuse radio sources in the galaxy cluster Abell 1550

A three-component giant radio halo: The puzzling case of the galaxy cluster Abell 2142

ViCTORIA project: The LOFAR HBA Virgo Cluster Survey

Low-frequency radio observations of recurrent nova RS Ophiuchi with MeerKAT and LOFAR


The open source BIMserver platform

Querying 3D Cadastral Information from BIM Models

ISPRS International Journal of Geo-Information

A SEMANTIC GRAPH DATABASE FOR BIM-GIS INTEGRATED INFORMATION MODEL FOR AN INTELLIGENT URBAN MOBILITY WEB APPLICATION

ISPRS annals of the photogrammetry, remote sensing and spatial information sciences

ARK-BIM: Open-Source Cloud-Based HBIM Platform for Archaeology

HBIM Open Source: A Review

PRACTICAL EXAMPLES ON BIM-GIS INTEGRATION BASED ON SEMANTIC WEB TRIPLESTORES

The international archives of the photogrammetry, remote sensing and spatial information sciences/International archives of the photogrammetry, remote sensing and spatial information sciences

Research on BIM model lightweighting methods and IoT technology application in the context of WebGL


A PyTorch Implementation of Single Shot MultiBox Detector

Very Deep Convolutional Networks for Large-Scale Image Recognition

SSD: Single Shot MultiBox Detector

CutMix: Regularization Strategy to Train Strong Classifiers with Localizable Features

Receptive Field Block Net for Accurate and Fast Object Detection

Learning Loss for Active Learning

Small Object Detection using Context and Attention

Interpolation-based semi-supervised learning for object detection

Entropy-based Active Learning for Object Detection with Progressive Diversity Constraint

URBAN-i: From urban scenes to mapping slums, transport modes, and pedestrians in cities using deep learning and computer vision

Environment and Planning B: Urban Analytics and City Science

Post-training Quantization with Multiple Points: Mixed Precision without Mixed Precision


What does it take to decarbonize your state?


The Renewable Energy Potential(V) eXchange Tool: reVX


Creative Commons Attribution 4.0 International

A vocabulary for future-oriented mobility solutions and value-added services supporting them.

Git4Voc: Git-based Versioning for Collaborative Vocabulary Development


Renewable Energy Integration Simulation Engine


A Python Library for Graph Outlier Detection (Anomaly Detection)

Variational Graph Auto-Encoders

Deep Anomaly Detection on Attributed Networks

Society for Industrial and Applied Mathematics eBooks

AnomalyDAE: Dual autoencoder for anomaly detection on attributed networks

One-class graph neural networks for anomaly detection in attributed networks

Outlier Aware Network Embedding for Attributed Networks

BOND: Benchmarking Unsupervised Outlier Node Detection on Static Attributed Graphs

PyGOD: A Python Library for Graph Outlier Detection

DAGAD: Data Augmentation for Graph Anomaly Detection

GAD-NR: Graph Anomaly Detection via Neighborhood Reconstruction

Improving Generalizability of Graph Anomaly Detection Models via Data Augmentation


An End-To-End, Lightweight and Flexible Platform for Game Research

ELF: An Extensive, Lightweight and Flexible Research Platform for Real-time Strategy Games

Deep Reinforcement Learning using Capsules in Advanced Game Environments

AI and Wargaming


Create emissions inputs for multiple air quality modeling systems with unmatched speed and flexibility


Wavelet Adaptive Block-Based solver for Interactions with Turbulence

A Wavelet-Adaptive Method for Multiscale Simulation of Turbulent Flows in Flying Insects

An Open and Parallel Multiresolution Framework Using Block-Based Adaptive Grids

Notes on numerical fluid mechanics and multidisciplinary design

A 3D wavelet-based incompressible Navier-Stokes solver for fully adaptive computations in time-varying geometries


Fast and flexible nonadiabatic molecular dynamics in Julia!

NQCDynamics.jl: A Julia package for nonadiabatic quantum classical molecular dynamics in the condensed phase.

Assessing Mixed Quantum-Classical Molecular Dynamics Methods for Nonadiabatic Dynamics of Molecules on Metal Surfaces

Efficient implementation and performance analysis of the independent electron surface hopping method for dynamics at metal surfaces

Machine Learning Interatomic Potentials for Reactive Hydrogen Dynamics at Metal Surfaces Based on Iterative Refinement of Reaction Probabilities

Benchmarking of machine learning interatomic potentials for reactive
  hydrogen dynamics at metal surfaces


InMAP reduced-form air quality model for fine particulate matter (PM2.5)

Fine-scale damage estimates of particulate matter air pollution reveal opportunities for location-specific mitigation of emissions

Proceedings of the National Academy of Sciences of the United States of America

A database for evaluating the InMAP, APEEP, and EASIUR reduced complexity air-quality modeling tools


Span-based system for named entity, relation, and event extraction.

Entity, Relation, and Event Extraction with Contextualized Span Representations

A Joint Neural Model for Information Extraction with Global Features

Meeting of the Association for Computational Linguistics

DEGREE: A Data-Efficient Generation-Based Event Extraction Model

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Evaluating progress in automatic chest X-ray radiology report generation

Gradual Fine-Tuning for Low-Resource Domain Adaptation

Extracting a Knowledge Base of Mechanisms from COVID-19 Papers

Language Model Priming for Cross-Lingual Event Extraction

DEGREE: A Data-Efficient Generative Event Extraction Model

Event Extraction as Question Generation and Answering


Simulation framework to model and control the tasks of vehicle fleets (routing, user-assignment, charging, ...)

Integrating parcel deliveries into a ride-pooling service—An agent-based simulation study

FleetPy: A Modular Open-Source Simulation Tool for Mobility On-Demand Services

Simulating Ride-Pooling Services with Pre-Booking and On-Demand Customers

Predictive Vehicle Repositioning for On-Demand Ride-Pooling Services


Medical image processing in Python

Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge

WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python

Occupancy Planes for Single-view RGB-D Human Reconstruction

Image Translation for Medical Image Generation -- Ischemic Stroke Lesions


High accuracy RAG for answering questions from scientific documents with citations

Augmenting large language models with chemistry tools

14 Examples of How LLMs Can Transform Materials Science and Chemistry: A Reflection on a Large Language Model Hackathon

ChemCrow: Augmenting large-language models with chemistry tools

PaperQA: Retrieval-Augmented Generative Agent for Scientific Research

Galactic ChitChat: Using Large Language Models to Converse with Astronomy Literature

Agent-based Learning of Materials Datasets from Scientific Literature


Tioga is a library for overset grid assembly on parallel distributed systems

ExaWind: A multifidelity modeling and simulation environment for wind energy

A parallel direct cut algorithm for high-order overset methods with application to a spinning golf ball

Validation of blade-resolved computational fluid dynamics for a MW-scale turbine rotor in atmospheric flow

SCIENCE OF MAKING TORQUE FROM WIND (TORQUE 2020), PTS 1-5

High-order computational fluid dynamics simulations of a spinning golf ball


EvoJAX: Hardware-accelerated Neuroevolution.

Adaptive Computation Time for Recurrent Neural Networks

Simple random search provides a competitive approach to reinforcement learning

EvoJAX: Hardware-Accelerated Neuroevolution

Proceedings of the Genetic and Evolutionary Computation Conference Companion

Accelerated Quality-Diversity through Massive Parallelism

cmaes : A Simple yet Practical Python Library for CMA-ES


A PyTorch Toolbox for Face Recognition

Dive into Ambiguity: Latent Distribution Mining and Pairwise Uncertainty Estimation for Facial Expression Recognition

FaceX-Zoo: A PyTorch Toolbox for Face Recognition

Masked Face Recognition Challenge: The InsightFace Track Report

MFR 2021: Masked Face Recognition Competition

Dual Spoof Disentanglement Generation for Face Anti-Spoofing With Depth Uncertainty Learning

Prepended Domain Transformer: Heterogeneous Face Recognition Without Bells and Whistles

A Survey on Computer Vision based Human Analysis in the COVID-19 Era

A Facial Expression-Aware Multimodal Multi-task Learning Framework for Emotion Recognition in Multi-party Conversations

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Mitigating Gender Bias in Face Recognition Using the von Mises-Fisher Mixture Model

Balanced Masked and Standard Face Recognition


Automatic program repair system for Java based on dynamic analysis and code synthesis with SMT. Also contains the code of Dynamoth.

Nopol: Automatic Repair of Conditional Statement Bugs in Java Programs

IEEE Transactions on Software Engineering

ARJA: Automated Repair of Java Programs via Multi-Objective Genetic Programming

A snowballing literature study on test amplification

Automatic Repair of Real Bugs: An Experience Report on the Defects4J Dataset

Revisiting ssFix for Better Program Repair

Dynamic Analysis can be Improved with Automatic Test Suite Refactoring


OpenCL library to train deep convolutional neural networks

Fast and Accurate Deep Network Learning by Exponential Linear Units (ELUs)

Multi-column Deep Neural Networks for Image Classification

Deep Learning on FPGAs: Past, Present, and Future

cltorch: a Hardware-Agnostic Backend for the Torch Deep Neural Network Library, Based on OpenCL

GPUReplay: A 50-KB GPU Stack for Client ML


Vitis Libraries

AutoDSE: Enabling Software Programmers to Design Efficient FPGA Accelerators

TAPA: A Scalable Task-parallel Dataflow Programming Framework for Modern FPGAs with Co-optimization of HLS and Physical Design

Democratizing Domain-Specific Computing

Understanding the Potential of FPGA-Based Spatial Acceleration for Large Language Model Inference

Low-power option Greeks: Efficiency-driven market risk analysis using FPGAs

PROCEEDINGS OF THE 12TH INTERNATIONAL SYMPOSIUM ON HIGHLY EFFICIENT ACCELERATORS AND RECONFIGURABLE TECHNOLOGIES, HEART 2022

CEAZ: Accelerating Parallel I/O Via Hardware-Algorithm Co-Designed Adaptive Lossy Compression

Callipepla: Stream Centric Instruction Set and Mixed Precision for Accelerating Conjugate Gradient Solver

Allo: A Programming Model for Composable Accelerator Design

Proceedings of the ACM on Programming Languages

EA4RCA:Efficient AIE accelerator design framework for Regular
  Communication-Avoiding Algorithm


EHT Analysis Toolkit

First M87 Event Horizon Telescope Results. III. Data Processing and Calibration

First Sagittarius A* Event Horizon Telescope Results. II. EHT and Multiwavelength Observations, Data Processing, and Calibration

Event Horizon Telescope observations of the jet launching and collimation in Centaurus A

EHT-HOPS Pipeline for Millimeter VLBI Data Reduction

Persistent Non-Gaussian Structure in the Image of Sagittarius A* at 86 GHz

Software and techniques for VLBI data processing and analysis


Lasagne recipes: examples, IPython notebooks, ...

Membership Inference Attacks against Machine Learning Models

Machine Learning Models that Remember Too Much

Feature Learning for Chord Recognition: The Deep Chroma Extractor

Learning What Data to Learn

Learning to Teach

Quantitatively Evaluating GANs With Divergences Proposed for Training

Texture Synthesis Using Shallow Convolutional Networks with Random Filters

Recognizing Birds from Sound - The 2018 BirdCLEF Baseline System

Super-resolution Using Constrained Deep Texture Synthesis


Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Accurate isoform discovery with IsoQuant using long reads

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv : the preprint server for biology

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing


Set of tests for fuzzing engines

Magma: A Ground-Truth Fuzzing Benchmark

Proceedings of the ACM on Measurement and Analysis of Computing Systems

Full-speed Fuzzing: Reducing Fuzzing Overhead through Coverage-guided Tracing

FuzzerGym: A Competitive Framework for Fuzzing and Learning

A Feature-Oriented Corpus for Understanding, Evaluating and Improving Fuzz Testing

Efficient Greybox Fuzzing to Detect Memory Errors

Proceedings of the 37th IEEE/ACM International Conference on Automated Software Engineering

Mutation Analysis: Answering the Fuzzing Challenge

MaxAFL: Maximizing Code Coverage with a Gradient-Based Optimization Technique

Exposing Bugs in JavaScript Engines through Test Transplantation and Differential Testing

A Case Study on Automated Fuzz Target Generation for Large Codebases

SHFuzz: Selective Hybrid Fuzzing with Branch Scheduling Based on Binary Instrumentation


pure-Julia multidimensional h-adaptive integration

Constraining the Polarization of Gravitational Waves with the Parkes Pulsar Timing Array Second Data Release

Multi-collinear splitting kernels for track function evolution

Green Tensor Analysis of Lattice Resonances in Periodic Arrays of Nanoparticles

Fluid dynamics of charm quarks in the quark-gluon plasma

Analysis of Bootstrap and Subsampling in High-dimensional Regularized
  Regression

Lattice Green's Functions for High Order Finite Difference Stencils

A Duet of Freeze-in and Freeze-out: Lepton-Flavored Dark Matter and Muon Colliders


Open Drug Discovery Toolkit

Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field

Development of a Protein-Ligand Extended Connectivity (PLEC) Fingerprint and Its Application for Binding Affinity Predictions.

Open-Source Machine Learning in Computational Chemistry

Journal of chemical information and modeling

Structure-based protein–ligand interaction fingerprints for binding affinity prediction

Computational and structural biotechnology journal


Database with posteriors of interest for Bayesian inference

Pathfinder: Parallel quasi-Newton variational inference

Challenges and Opportunities in High-dimensional Variational Inference

Detecting and diagnosing prior and likelihood sensitivity with power-scaling

A Framework for Improving the Reliability of Black-box Variational Inference

Delayed rejection Hamiltonian Monte Carlo for sampling multiscale distributions

Foundation Posteriors for Approximate Probabilistic Inference

Automatic Guide Generation for Stan via NumPyro

Bernstein Flows for Flexible Posteriors in Variational Bayes

Batch and match: black-box variational inference with a score-based
  divergence


Leverage your IoT enabled Solar PV Inverter to stream your solar energy usage data to a real time dashboard.


Python API to access the Copernicus Climate Data Store (CDS)

OpenForecast v2: Development and Benchmarking of the First National-Scale Operational Runoff Forecasting System in Russia

Impact of mobility restrictions on NO2 concentrations in key Latin American cities during the first wave of the COVID-19 pandemic

Identifying the Causes of Pyrocumulonimbus (PyroCb)

Pyrocast: a Machine Learning Pipeline to Forecast Pyrocumulonimbus (PyroCb) Clouds


Facilitating the design, comparison and sharing of deep text matching models.

Hierarchical Poset Decoding for Compositional Generalization in Language

Interpreting Neural Ranking Models using Grad-CAM

Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges


Single cell perturbation prediction

scvi-tools: a library for deep probabilistic analysis of single-cell omics data

Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis

Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seq

Journal of translational genetics and genomics

Expression quantitative trait locus studies in the era of single-cell omics

A deep generative framework with embedded vector arithmetic and classifier for sample generation, label transfer, and clustering of single-cell data


Biopet docs

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing

Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients

The Journal of molecular diagnostics : JMD

The Cortisol Response of Male and Female Choroidal Endothelial Cells: Implications for Central Serous Chorioretinopathy

The Journal of clinical endocrinology and metabolism

Vascular Tumor Recapitulated in Endothelial Cells from hiPSCs Engineered to Express the SERPINE1-FOSB Translocation

Tissue microenvironment dictates the state of human induced pluripotent stem cell-derived endothelial cells of distinct developmental origin in 3D cardiac microtissues


Thermal energy components for the Open Energy Modeling Framework (oemof).


Krylov methods for linear problems, eigenvalues, singular values and matrix functions

Differentiable programming tensor networks for Kitaev magnets

Correlation functions for realistic continuous quantum measurement

Quantum process tomography of unitary maps from time-delayed measurements


Grammar of Graph Graphics

Single-cell brain organoid screening identifies developmental defects in autism

Salinity Gradient Controls Microbial Community Structure and Assembly in Coastal Solar Salterns

Identification of Risk Factors for African Swine Fever: A Systematic Review

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome

ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics

Metabolomic profiles in night shift workers: A cross-sectional study on hospital female nurses

Metagenomic Strain-Typing Combined with Isolate Sequencing Provides Increased Resolution of the Genetic Diversity of Campylobacter jejuni Carriage in Wild Birds


A versatile modelling tool for transiting and non-transiting (single and multiple) exoplanetary systems

juliet: a versatile modelling tool for transiting and non-transiting exoplanetary systems

Monthly notices of the Royal Astronomical Society

Early Release Science of the exoplanet WASP-39b with JWST NIRISS

Transit detection of the long-period volatile-rich super-Earth ν2 Lupi d with CHEOPS

A nearby transiting rocky exoplanet that is suitable for atmospheric investigation

HD 213885b: a transiting 1-d-period super-Earth with an Earth-like composition around a bright (V=7.9) star unveiled by TESS

An ultrahot Neptune in the Neptune desert

A detailed analysis of the Gl 486 planetary system

TOI-132 b: A short-period planet in the Neptune desert transiting a v = 11.3 G-type star

Monthly Notices of the Royal Astronomical Society

HATS-54b–HATS-58Ab: Five New Transiting Hot Jupiters Including One with a Possible Temperate Companion

The geometric albedo of the hot Jupiter HD 189733b measured with CHEOPS


Meteorology Simulator

Parameters for PITRI Precipitation Temporal Disaggregation over continental US, Mexico, and southern Canada, 1981-2013

Zenodo (CERN European Organization for Nuclear Research)


A web application built on top of MyBatis 3, Spring 3 and Stripes

A Microservice Decomposition Method Through Using Distributed Representation of Source Code

Scalable Computing: Practice and Experience

An efficient method for uncertainty propagation in robust software performance estimation

Lessons learned from hyper-parameter tuning for microservice candidate identification

An Expert System for Redesigning Software for Cloud Applications

A Comprehensive Survey on Energy Consumption Analysis for NoSQL

RADF: Architecture decomposition for function as a service


Quadratic programming solvers in Python with a unified API

Ultrasound-Guided Assistive Robots for Scoliosis Assessment With Optimization-Based Control and Variable Impedance

Real-Time System for Daily Modal Split Estimation and OD Matrices Generation Using IoT Data: A Case Study of Tartu City

Effective pruning of web-scale datasets based on complexity of concept clusters

Fused Density Estimation: Theory and Methods

A fully Lagrangian, non-parametric bias model for dark matter halos


NYU ML² work on sentence encoding with tree structure and dynamic graphs

Right for the Wrong Reasons: Diagnosing Syntactic Heuristics in Natural Language Inference

A Fast Unified Model for Parsing and Sentence Understanding

ListOps: A Diagnostic Dataset for Latent Tree Learning

Do latent tree learning models identify meaningful structure in sentences?

The Lifted Matrix-Space Model for Semantic Composition


tiktoken is a fast BPE tokeniser for use with OpenAI's models.

Qwen Technical Report

The Llama 3 Herd of Models

LongNet: Scaling Transformers to 1,000,000,000 Tokens

ExpeL: LLM Agents Are Experiential Learners

Embers of Autoregression: Understanding Large Language Models Through the Problem They are Trained to Solve

Can Generative Pre-trained Transformers (GPT) Pass Assessments in Higher Education Programming Courses?

LongLLMLingua: Accelerating and Enhancing LLMs in Long Context Scenarios via Prompt Compression

Undetectable Watermarks for Language Models

ChatGLM: A Family of Large Language Models from GLM-130B to GLM-4 All
  Tools

The Belebele Benchmark: a Parallel Reading Comprehension Dataset in 122 Language Variants


American Gut open-access data and IPython notebooks

Gut microbiota diversity across ethnicities in the United States

Diversity and Composition of the Adult Fecal Microbiome Associated with History of Cesarean Birth or Appendectomy: Analysis of the American Gut Project

MicrobiomeGWAS: A Tool for Identifying Host Genetic Variants Associated with Microbiome Composition

Extending species-area relationships (SAR) to diversity-area relationships (DAR)

MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations

The Microbiome and Metabolomic Profile of the Transplanted Intestine with Long-Term Function

Estimating the Optimum Coverage and Quality of Amplicon Sequencing With Taylor’s Power Law Extensions

Frontiers in bioengineering and biotechnology


CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

Genome evolution and diversity of wild and cultivated potatoes

Single-Cell Virus Sequencing of Influenza Infections That Trigger Innate Immunity

A complete telomere-to-telomere assembly of the maize genome

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Mitochondrial DNA variation across 56,434 individuals in gnomAD

Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions

A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus


Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.

Understanding Convolution for Semantic Segmentation

Deeply Supervised Salient Object Detection with Short Connections

IEEE Transactions on Pattern Analysis and Machine Intelligence

Unsupervised Moving Object Detection via Contextual Information Separation

Region Mutual Information Loss for Semantic Segmentation

Bounding boxes for weakly supervised segmentation: Global constraints get close to full supervision

A Collaborative Region Detection and Grading Framework for Forest Fire Smoke Using Weakly Supervised Fine Segmentation and Lightweight Faster-RCNN

Object-aware Contrastive Learning for Debiased Scene Representation

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

Guided Anisotropic Diffusion and Iterative Learning for Weakly Supervised Change Detection

Correlation Maximized Structural Similarity Loss for Semantic Segmentation


A simple and extensible library to create Bayesian Neural Network layers on PyTorch.

Weight Uncertainty in Neural Networks

The Peril of Popular Deep Learning Uncertainty Estimation Methods

UncertaINR: Uncertainty Quantification of End-to-End Implicit Neural Representations for Computed Tomography

The Monte Carlo Transformer: a stochastic self-attention model for sequence prediction

A Potential Prognosis Indicator Based on P300 Brain–Computer Interface for Patients with Disorder of Consciousness

TyXe: Pyro-based Bayesian neural nets for Pytorch

Semi-supervised Impedance Inversion by Bayesian Neural Network Based on 2-d CNN Pre-training

Improving Compositionality of Neural Networks by Decoding Representations to Inputs

CUE: An Uncertainty Interpretation Framework for Text Classifiers Built on Pre-Trained Language Models

Likelihood-Free Inference in State-Space Models with Unknown Dynamics


MATPOWER – steady state power flow simulation and optimization for MATLAB and Octave

Multi-Agent Reinforcement Learning for Active Voltage Control on Power Distribution Networks

A generative graph model for electrical infrastructure networks

An Influence Model Approach to Failure Cascade Prediction in Large Scale Power Systems


tinycrypt is a library of cryptographic algorithms with a focus on small, simple implementation.

A Guideline on Pseudorandom Number Generation (PRNG) in the IoT

Quantum-Resistant Security for Software Updates on Low-power Networked Embedded Devices

Usable Security for an IoT OS: Integrating the Zoo of Embedded Crypto Components Below a Common API


ktrain is a Python library that makes deep learning and AI more accessible and easier to apply

ktrain: A Low-Code Library for Augmented Machine Learning

Offensive language identification in Dravidian code mixed social media text

ASAD: A Twitter-based Benchmark Arabic Sentiment Analysis Dataset

Politics and Politeness: Analysis of Incivility on Twitter During the 2020 Democratic Presidential Primary

Perspectives of Non-Expert Users on Cyber Security and Privacy: An Analysis of Online Discussions on Twitter

Emotion detection of social data: APIs comparative study

The Quality Assist: A Technology-Assisted Peer Review Based on Citation Functions to Predict the Paper Quality


A code to generate atomic structure with symmetry

PyXtal: A Python library for crystal structure generation and symmetry analysis

Assessing the feasibility of near-ambient conditions superconductivity in the Lu-N-H system

Spectral neural network potentials for binary alloys

Structure prediction of two-dimensional materials based on neural network-driven evolutionary technique

From electrons to phase diagrams with classical and machine learning
  potentials: automated workflows for materials science with pyiron

Quantification of Crystal Packing Similarity from Spherical Harmonic Transform


Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining

Automated assembly of molecular mechanisms at scale from text mining and curated databases

INDRA-IPM: interactive pathway modeling using natural language with automated assembly


distributed trainer for LLMs

MEDITRON-70B: Scaling Medical Pretraining for Large Language Models

Executable Code Actions Elicit Better LLM Agents

Tower: An Open Multilingual Large Language Model for Translation-Related
  Tasks

Text-Based Reasoning About Vector Graphics

Sailor: Open Language Models for South-East Asia

MedCalc-Bench: Evaluating Large Language Models for Medical Calculations


Modular Open Source Fitter for Transients

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. II. UV, Optical, and Near-infrared Light Curves and Comparison to Kilonova Models

The Magnetar Model for Type I Superluminous Supernovae. I. Bayesian Analysis of the Full Multicolor Light-curve Sample with MOSFiT

A kilonova following a long-duration gamma-ray burst at 350 Mpc

MOSFiT: Modular Open-Source Fitter for Transients

The Astrophysical Journal Supplement Series

Models and Simulations for the Photometric LSST Astronomical Time Series Classification Challenge (PLAsTiCC)

Publications of the Astronomical Society of the Pacific

Theoretical Models of Optical Transients. I. A Broad Exploration of the Duration–Luminosity Phase Space

Tight multimessenger constraints on the neutron star equation of state from GW170817 and a forward model for kilonova light-curve synthesis

A Deep CFHT Optical Search for a Counterpart to the Possible Neutron Star–Black Hole Merger GW190814

Optical line spectra of tidal disruption events from reprocessing in optically thick outflows

A multi-messenger model for neutron star - black hole mergers


REL: Radboud Entity Linker

REL: An Entity Linker Standing on the Shoulders of Giants

PROCEEDINGS OF THE 43RD INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL (SIGIR '20)

Entity Linking Meets Deep Learning: Techniques and Solutions

How can voting mechanisms improve the robustness and generalizability of toponym disambiguation?

TweetNERD - End to End Entity Linking Benchmark for Tweets

Pre-training Language Models with Deterministic Factual Knowledge

OpenEL: An Annotated Corpus for Entity Linking and Discourse in Open Domain Dialogue

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION

MMEAD: MS MARCO Entity Annotations and Disambiguations

Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval


Code for the habitat challenge

Habitat: A Platform for Embodied AI Research

Gibson Env: Real-World Perception for Embodied Agents

On Evaluation of Embodied Navigation Agents

Object Goal Navigation using Goal-Oriented Semantic Exploration

Habitat 2.0: Training Home Assistants to Rearrange their Habitat

Habitat-Matterport 3D Dataset (HM3D): 1000 Large-scale 3D Environments for Embodied AI

ObjectNav Revisited: On Evaluation of Embodied Agents Navigating to Objects

Sim2Real Predictivity: Does Evaluation in Simulation Predict Real-World Performance?

International Conference on Robotics and Automation

Habitat-Matterport 3D Semantics Dataset


Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

FAIR Data Point: A FAIR-Oriented Approach for Metadata Publication

The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data

Towards FAIR protocols and workflows: The OpenPREDICT case study


LD Score Regression (LDSC)

Partitioning heritability by functional annotation using genome-wide association summary statistics

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals

Genome-wide association study identifies 74 loci associated with educational attainment

Meta-analysis of genome-wide association studies for body fat distribution in 694 649 individuals of European ancestry

Genome-wide association studies of brain imaging phenotypes in UK Biobank

Transancestral GWAS of alcohol dependence reveals common genetic underpinnings with psychiatric disorders

Genetic identification of brain cell types underlying schizophrenia

Comparative genetic architectures of schizophrenia in East Asian and European populations

Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors


V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC

V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data

V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data

Sequencing of SARS-CoV-2 RNA Fragments in Wastewater Detects the Spread of New Variants during Major Events

VGEA: an RNA viral assembly toolkit


Consolidated switch repo (API, SAI and Nettlink)

Uncovering Bugs in P4 Programs with Assertion-based Verification

P4K: A Formal Semantics of P4 and Applications

Can we exploit buggy P4 programs?

A Case for Data Centre Traffic Management on Software Programmable Ethernet Switches

PROCEEDING OF THE 2019 IEEE 8TH INTERNATIONAL CONFERENCE ON CLOUD NETWORKING (CLOUDNET)

Towards Runtime Verification of Programmable Switches

DUNE: Improving Accuracy for Sketch-INT Network Measurement Systems


A JuMP-based Nonlinear Integer Program Solver

Juniper: An Open-Source Nonlinear Branch-and-Bound Solver in Julia

Outer approximation with conic certificates for mixed-integer convex problems

Hydroelectric Operation Optimization and Unexpected Spillage Indications


DAMO-ConvAI: The official repository which contains the codebase for Alibaba DAMO Conversational AI.

Preference Ranking Optimization for Human Alignment

API-Bank: A Comprehensive Benchmark for Tool-Augmented LLMs

Graphix-T5: Mixing Pre-Trained Transformers with Graph-Aware Layers for Text-to-SQL Parsing

Unified Dialog Model Pre-training for Task-Oriented Dialog Understanding and Generation

Wider and Deeper LLM Networks are Fairer LLM Evaluators

Chain-of-Table: Evolving Tables in the Reasoning Chain for Table Understanding

Proton: Probing Schema Linking Information from Pre-trained Language Models for Text-to-SQL Parsing

Dynamic Hybrid Relation Network for Cross-Domain Context-Dependent Semantic Parsing

SPACE-2: Tree-Structured Semi-Supervised Contrastive Pre-training for Task-Oriented Dialog Understanding

STAR: SQL Guided Pre-Training for Context-dependent Text-to-SQL Parsing


A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

DeepDTA: deep drug–target binding affinity prediction

DeepPurpose: a deep learning library for drug–target interaction prediction

Trends and Potential of Machine Learning and Deep Learning in Drug Study at Single-Cell Level

MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning

ImDrug: A Benchmark for Deep Imbalanced Learning in AI-aided Drug Discovery

Uni-QSAR: an Auto-ML Tool for Molecular Property Prediction


Full-Length Alternative Isoform analysis of RNA

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv : the preprint server for biology

Translational repression of NMD targets by GIGYF2 and EIF4E2

A high-quality reference genome for the fission yeastSchizosaccharomyces osmophilus

Detecting haplotype-specific transcript variation in long reads with FLAIR2

Alternative mRNA Splicing Controls the Functions of the Histone H3K27 Demethylase UTX/KDM6A

Full-length transcript alterations in human bronchial epithelial cells with U2AF1 S34F mutations

Disruption of mitochondrial pyruvate oxidation in dorsal root ganglia drives persistent nociceptive sensitization and causes pervasive transcriptomic alterations

Blockade of pro-fibrotic response mediated by the miR-143/-145 cluster prevents targeted therapy-induced phenotypic plasticity and resistance in melanoma


Build a partitioned pangenome graph from microbial genomes

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

panRGP: a pangenome-based method to predict genomic islands and explore their diversity

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

panModule: detecting conserved modules in the variable regions of a pangenome graph

Strain-level Screening of Human Gut Microbes Identifies Blautia Producta as a Novel Anti-hyperlipidemic Probiotic Via the Production of 12-methylmyristic Acid


Free RPA tool by AI Singapore

Evolutionary Survey on Robotic Process Automation and Artificial Intelligence

Towards Intelligent Robotic Process Automation for BPMers

On the Evaluation of Intelligent Process Automation


NASA PVS Library of Formal Developments

Alignment-based Translations Across Formal Systems Using Interface Theories

Teaching Interactive Proofs to Mathematicians

Embedding Differential Dynamic Logic in PVS

Electronic Proceedings in Theoretical Computer Science

Windmills of the minds: an algorithm for fermat’s two squares theorem

Proceedings of the 11th ACM SIGPLAN International Conference on Certified Programs and Proofs

Lebesgue Induction and Tonelli's Theorem in Coq


R package hyperSpec can now be found at https://github.com/r-hyperspec/hyperSpec

Implementing the CRISPR/Cas9 Technology in Eucalyptus Hairy Roots Using Wood-Related Genes

International journal of molecular sciences

Low biodegradability of dissolved organic matter from Southeast Asian peat-draining rivers

Journal of Geophysical Research: Biogeosciences

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations

Revealing the Chemical Composition of Birch Pollen Grains by Raman Spectroscopic Imaging

Diffuse reflectance spectroscopy characterises the functional chemistry of soil organic carbon in agricultural soils

Methane Production Rate during Anoxic Litter Decomposition Depends on Si Mass Fractions, Nutrient Stoichiometry, and Carbon Quality

Effect of elevation, season and accelerated snowmelt on biogeochemical processes during isolated conifer needle litter decomposition


General Board Game Playing

General Board Game Playing for Education and Research in Generic AI Game Learning

AlphaZero-Inspired Game Learning: Faster Training by Using MCTS Only at Test Time

Final Adaptation Reinforcement Learning for N-Player Games

Towards Learning Rubik's Cube with N-tuple-based Reinforcement Learning


Phylogenetic ANalyses of DiversificAtion

Estimating the effect of competition on trait evolution using maximum likelihood inference

Estimating Diversity Through Time using Molecular Phylogenies: Old and Species-Poor Frog Families are the Remnants of a Diverse Past

Limited ecological opportunity influences the tempo of morphological evolution in birds


Text-to-3D & Image-to-3D & Mesh Exportation with NeRF + Diffusion.

DreamFusion: Text-to-3D using 2D Diffusion

ProlificDreamer: High-Fidelity and Diverse Text-to-3D Generation with Variational Score Distillation

Score Jacobian Chaining: Lifting Pretrained 2D Diffusion Models for 3D Generation

Latent-NeRF for Shape-Guided Generation of 3D Shapes and Textures

DreamGaussian: Generative Gaussian Splatting for Efficient 3D Content Creation

Magic123: One Image to High-Quality 3D Object Generation Using Both 2D and 3D Diffusion Priors

RealFusion 360° Reconstruction of Any Object from a Single Image

Objaverse-XL: A Universe of 10M+ 3D Objects

DreamAvatar: Text-and-Shape Guided 3D Human Avatar Generation via Diffusion Models

Scalable 3D Captioning with Pretrained Models


Modeling of residential buildings in EnergyPlus using OpenStudio/HPXML.


Efficient teacher-student models and scripts to make them

Exploring Diversity in Back Translation for Low-Resource Machine Translation

Pruning Neural Machine Translation for Speed Using Group Lasso

Sampling and Filtering of Neural Machine Translation Distillation Data

Low-Rank Softmax Can Have Unargmaxable Classes in Theory but Rarely in Practice

TranslateLocally: Blazing-fast translation running on the local CPU

Leveraging Neural Machine Translation for Word Alignment

The Prague Bulletin of Mathematical Linguistics

The University of Edinburgh's Submission to the WMT22 Code-Mixing Shared Task (MixMT)


R package for MetaboAnalyst

MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data

MetaboAnalystR 2.0: From Raw Spectra to Biological Insights

Snow algae communities in Antarctica: metabolic and taxonomic composition

Compartmentalized metabolism supports midgestation mammalian development

CRISPR/Cas9-Mediated Targeted Mutagenesis of GmUGT Enhanced Soybean Resistance Against Leaf-Chewing Insects Through Flavonoids Biosynthesis

Effects of Copper and pH on the Growth and Physiology of Desmodesmus sp. AARLG074

Plasma metabolic disturbances during pregnancy and postpartum in women with depression

Widely Targeted Metabolomics Analysis of Soybean and Chickpea and Their Different Advantages and New Functional Compounds for Diabetes

Habituation to Livestock Trailer and Its Influence on Stress Responses during Transportation in Goats

Animals : an open access journal from MDPI

Metabolomic Profiles of Multidrug-Resistant Salmonella Typhimurium from Humans, Bovine, and Porcine Hosts


This tool parses log data and allows to define analysis pipelines for anomaly detection. It was designed to run the analysis with limited resources and lowest possible permissions to make it suitable for production server use.

AMiner: A Modular Log Data Analysis Pipeline for Anomaly-based Intrusion Detection

Behavior-Based Anomaly Detection in Log Data of Physical Access Control Systems

IEEE Transactions on Dependable and Secure Computing

Introducing a New Alert Data Set for Multi-Step Attack Analysis


Automatic Analysis (aa)

Distinct aspects of frontal lobe structure mediate age-related differences in fluid intelligence and multitasking

Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML

Idiosyncratic responding during movie-watching predicted by age differences in attentional control

The effects of age on resting-state BOLD signal variability is explained by cardiovascular and cerebrovascular factors

Neurobiological Systems for Lexical Representation and Analysis in English

Neural evidence for age-related differences in representational quality and strategic retrieval processes

Task modulation of brain responses in visual word recognition as studied using EEG/MEG and fMRI

Characterising group-level brain connectivity: A framework using Bayesian exponential random graph models

Entorhinal cortex minimises uncertainty for optimal behaviour


py4dgeo - A Python library for change analysis in 4D point clouds


Easily train your own text-generating neural network of any size and complexity on any text dataset with a few lines of code.

Towards Debiasing Sentence Representations

Constrained Language Models for Interactive Poem Generation

Unsupervised Inflection Generation Using Neural Language Modeling


information artifact ontology

Introducing the Open Energy Ontology: Enhancing data interpretation and interfacing in energy systems analysis

Community standards for open cell migration data

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis

Organizing phenotypic data—a semantic data model for anatomy

Transforming the study of organisms: Phenomic data models and knowledge bases

OPTION: OPTImization Algorithm Benchmarking ONtology

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology

Topical Classification of Food Safety Publications with a Knowledge Base

OPPO: An Ontology for Describing Fine-Grained Data Practices in Privacy Policies of Online Social Networks


soilDB: Simplified Access to National Cooperative Soil Survey Databases


QALD sources (data, website, documents, scripts) https://qald.aksw.org/

ChatGPT versus Traditional Question Answering for Knowledge Graphs: Current Status and Future Directions Towards Knowledge Graph Chatbots

Improving Zero-Shot Cross-lingual Transfer for Multilingual Question Answering over Knowledge Graph

North American Chapter of the Association for Computational Linguistics

Maximum Bayes Smatch Ensemble Distillation for AMR Parsing

A Universal Question-Answering Platform for Knowledge Graphs

The Qanary Ecosystem: Getting New Insights by Composing Question Answering Pipelines

Transformer based Natural Language Generation for Question-Answering

Proceedings of the 13th International Conference on Natural Language Generation

Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data

What is in the KGQA Benchmark Datasets? Survey on Challenges in Datasets for Question Answering on Knowledge Graphs

Sanitizing Synthetic Training Data Generation for Question Answering over Knowledge Graphs

International Conference on the Theory of Information Retrieval

QueDI: From Knowledge Graph Querying to Data Visualization


Example RISC-V Out-of-Order/Superscalar Processor Performance Core and MSS Model


Python implementation of the NEAT neuroevolution algorithm

EGAD! An Evolved Grasping Analysis Dataset for Diversity and Reproducibility in Robotic Manipulation

Evolution Gym: A Large-Scale Benchmark for Evolving Soft Robots

Intrinsically Motivated Discovery of Diverse Patterns in Self-Organizing Systems

Class binarization to neuroevolution for multiclass classification

GeneSys: Enabling Continuous Learning through Neural Network Evolution in Hardware

Seeking Quality Diversity in Evolutionary Co-design of Morphology and Control of Soft Tensegrity Modular Robots

Proceedings of the Genetic and Evolutionary Computation Conference

Procedural content generation using neuroevolution and novelty search for diverse video game levels

Evolving Neural Networks through a Reverse Encoding Tree

Systematic perturbation of an artificial neural network: A step towards quantifying causal contributions in the brain

RankNEAT: Outperforming Stochastic Gradient Search in Preference Learning Tasks


an imagenet example in torch.

OverFeat: Integrated Recognition, Localization and Detection using Convolutional Networks

Learning Deep Representations of Fine-grained Visual Descriptions

Parametric Exponential Linear Unit for Deep Convolutional Neural Networks

Comparative Study of Deep Learning Software Frameworks

PowerAI DDL

Efficient Training of Convolutional Neural Nets on Large Distributed Systems


Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

Neural Ordinary Differential Equations

Latent ODEs for Irregularly-Sampled Time Series

Augmented Neural ODEs

Score-based Generative Modeling in Latent Space

Neural Controlled Differential Equations for Irregular Time Series

On Neural Differential Equations

Voicebox: Text-Guided Multilingual Universal Speech Generation at Scale

On Robustness of Neural Ordinary Differential Equations

Augmenting physical models with deep networks for complex dynamics forecasting

Neural SDEs as Infinite-Dimensional GANs


pix2tex: Using a ViT to convert images of equations into LaTeX code.

An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

Image-to-Markup Generation with Coarse-to-Fine Attention

Nougat: Neural Optical Understanding for Academic Documents

GeoGalactica: A Scientific Large Language Model in Geoscience

TEIMMA: The First Content Reuse Annotator for Text, Images, and Math

OmniFusion Technical Report


Tooling for GANs in TensorFlow

Flow Matching for Generative Modeling

Generative Models for Effective ML on Private, Decentralized Datasets

Is Attention Better Than Matrix Decomposition?

Multisample Flow Matching: Straightening Flows with Minibatch Couplings

Group Equivariant Generative Adversarial Networks

Scientific Discovery by Generating Counterfactuals using Image Translation

Conditional Generation of Medical Images via Disentangled Adversarial Inference

GANMEX: One-vs-One Attributions using GAN-based Model Explainability

Improving Efficiency of Diffusion Models via Multi-Stage Framework and Tailored Multi-Decoder Architectures

GANMEX: One-vs-One Attributions Guided by GAN-based Counterfactual Explanation Baselines


TRAM is an open-source platform designed to advance research into automating the mapping of cyber threat intelligence reports to MITRE ATT&CK®.

Cybersecurity Threat Hunting and Vulnerability Analysis Using a Neo4j Graph Database of Open Source Intelligence

Semantic Ranking for Automated Adversarial Technique Annotation in
  Security Text


[CVPR 2023 Highlight] InternImage: Exploring Large-Scale Vision Foundation Models with Deformable Convolutions

BEVFormer v2: Adapting Modern Image Backbones to Bird's-Eye-View Recognition via Perspective Supervision

Uni-Perceiver v2: A Generalist Model for Large-Scale Vision and Vision-Language Tasks

WeatherProof: A Paired-Dataset Approach to Semantic Segmentation in Adverse Weather

When Pedestrian Detection Meets Multi-Modal Learning: Generalist Model
  and Benchmark Dataset


FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Fast and accurate de novo genome assembly from long uncorrected reads

Phased diploid genome assembly with single-molecule real-time sequencing

Multi-platform discovery of haplotype-resolved structural variation in human genomes

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm

De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter


C++ library for solving large sparse linear systems with algebraic multigrid method

AMGCL: An Efficient, Flexible, and Extensible Algebraic Multigrid Implementation

Small Sample Learning of Superpixel Classifiers for EM Segmentation

Accelerating linear solvers for Stokes problems with C++ metaprogramming

On Solving Groundwater Flow and Transport Models with Algebraic Multigrid Preconditioning

Subdomain Deflation Combined with Local AMG: A Case Study Using AMGCL Library

SOFTWARE FOR THE THERMAL FIELD CALCULATION IN 3D MODELS OF SEMICONDUCTOR DEVICES

Electronic engineering Series 2 Semiconductor devices

Accelerating linear solvers for large-scale Stokes problems with C++ metaprogramming.

Efficient Solution of 3D Elasticity Problems with Smoothed Aggregation Algebraic Multigrid and Block Arithmetics

Rheological aspects of underground fluid dynamics and mass exchange processes

Epitoanyag-Journal of Silicate Based and Composite Materials


tmux source code

CERBERUS: Autonomous Legged and Aerial Robotic Exploration in the Tunnel and Urban Circuits of the DARPA Subterranean Challenge

Team CERBERUS Wins the DARPA Subterranean Challenge: Technical Overview and Lessons Learned

robo-gym -- An Open Source Toolkit for Distributed Deep Reinforcement Learning on Real and Simulated Robots

UAV4PE: An Open-Source Framework to Plan UAV Autonomous Missions for Planetary Exploration

Finding Software Vulnerabilities in Open-Source C Projects via Bounded Model Checking

FuzzSlice: Pruning False Positives in Static Analysis Warnings through Function-Level Fuzzing

Proceedings of the 46th IEEE/ACM International Conference on Software Engineering

An anthropological account of the Vim text editor: features and tweaks after 10 years of usage


:earth_americas: Verification of weather and climate forecasts :earth_africa:

Trivial improvements of predictive skill due to direct reconstruction
of global carbon cycle


Finding duplicate images made easy!

Searching for MobileNetV3

DataComp: In search of the next generation of multimodal datasets

The Privacy Onion Effect: Memorization is Relative

Perfusion Quantification from Endoscopic Videos: Learning to Read Tumor Signatures

Privacy Side Channels in Machine Learning Systems

No "Zero-Shot" Without Exponential Data: Pretraining Concept Frequency
  Determines Multimodal Model Performance

Students Parrot Their Teachers: Membership Inference on Model Distillation

Placental vessel segmentation and registration in fetoscopy: Literature review and MICCAI FetReg2021 challenge findings

CE-Dedup: Cost-Effective Convolutional Neural Nets Training based on Image Deduplication

DiffusionLight: Light Probes for Free by Painting a Chrome Ball


The Harmonized Emissions Component (HEMCO), developed by the GEOS-Chem Support Team.


Neutrino oscillation software using SQuIDS.

Updated global 3+1 analysis of short-baseline neutrino oscillations

eV-Scale Sterile Neutrino Search Using Eight Years of Atmospheric Muon Neutrino Data from the IceCube Neutrino Observatory

First Constraints on the Complete Neutrino Mixing Matrix with a Sterile Neutrino

Dark matter annihilation to neutrinos

Solar atmospheric neutrinos and the sensitivity floor for solar dark matter annihilation searches

Journal of Cosmology and Astroparticle Physics

Search for nonstandard neutrino interactions with IceCube DeepCore

Bounds on secret neutrino interactions from high-energy astrophysical neutrinos

Dark matter, destroyer of worlds: neutrino, thermal, and existential signatures from black holes in the Sun and Earth

High-energy neutrino attenuation in the Earth and its associated uncertainties

Neutrino decoherence from quantum gravitational stochastic perturbations


Just Another JAva Package for Sequence Analysis

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing

Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode

Pseudo-Chromosomal Genome Assembly in Combination with Comprehensive Transcriptome Analysis in Agaricus bisporus Strain KMCC00540 Reveals Mechanical Stimulus Responsive Genes Associated with Browning Effect

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing


Allows multiple parties to agree on transactions before execution.

Harvey: A Greybox Fuzzer for Smart Contracts

Targeted Greybox Fuzzing with Static Lookahead Analysis

Practical Mitigation of Smart Contract Bugs

Key Event Receipt Infrastructure (KERI)

Learning Inputs in Greybox Fuzzing

Wallet Contracts on Ethereum -- Identification, Types, Usage, and
  Profiles


A Planetary Intensity Code for Atmospheric Spectroscopy Observations

Early Release Science of the exoplanet WASP-39b with JWST NIRISS

JWST-TST DREAMS: Quartz Clouds in the Atmosphere of WASP-17b

Cloudy and Cloud-free Thermal Phase Curves with PICASO: Applications to WASP-43b

Generic Models for Disk-resolved and Disk-integrated Phase-dependent Linear Polarization of Light Reflected from Exoplanets

Modeling Atmospheric Lines by the Exoplanet Community (MALBEC) Version 1.0: A CUISINES Radiative Transfer Intercomparison Project

Radiative transfer and inversion codes for characterizing planetary atmospheres: an overview

Frontiers in Astronomy and Space Sciences

A Wolf 359 in Sheep's Clothing: Hunting for Substellar Companions in the Fifth-closest System Using Combined High-contrast Imaging and Radial Velocity Analysis


Toolkit for working with RADIANCE for the ray-trace modeling of Bifacial Photovoltaics

The 2020 photovoltaic technologies roadmap

Validation of Bifacial Photovoltaic Simulation Software against Monitoring Data from Large-Scale Single-Axis Trackers and Fixed Tilt Systems in Denmark


This is a webshell open source project

Mitigating Webshell Attacks through Machine Learning Techniques

A Web Shell Detection Method Based on Multiview Feature Fusion

WebShell Attack Detection Based on a Deep Super Learner

WTA: A Static Taint Analysis Framework for PHP Webshell

Research on WebShell Detection Method Based on Regularized Neighborhood Component Analysis (RNCA)

BERT-Embedding-Based JSP Webshell Detection on Bytecode Level Using XGBoost


RobustBench: a standardized adversarial robustness benchmark [NeurIPS 2021 Benchmarks and Datasets Track]

Helper-based Adversarial Training: Reducing Excessive Margin to Achieve a Better Accuracy vs. Robustness Trade-off

International Conference on Machine Learning

Stable Neural ODE with Lyapunov-Stable Equilibrium Points for Defending Against Adversarial Attacks

A Winning Hand: Compressing Deep Networks Can Improve Out-Of-Distribution Robustness

Enhance the Visual Representation via Discrete Adversarial Training

Attacking Adversarial Attacks as A Defense

If your data distribution shifts, use self-learning

DISCO: Adversarial Defense with Local Implicit Functions

Towards Evaluating the Robustness of Neural Networks Learned by Transduction

Meta-Learning the Search Distribution of Black-Box Random Search Based Adversarial Attacks


A python library built to empower developers to build applications and systems  with self-contained Computer Vision capabilities

Influence of the Computer-Aided Decision Support System Design on Ultrasound-Based Breast Cancer Classification

Natural Analogues in pH Variability and Predictability across the Coastal Pacific Estuaries: Extrapolation of the Increased Oyster Dissolution under Increased pH Amplitude and Low Predictability Related to Ocean Acidification

Object Detection Based Handwriting Localization

BactoSpin: Novel Technology for Rapid Bacteria Detection and Antibiotic Susceptibility Testing

Affective Episodic Memory System for Virtual Creatures: The First Step of Emotion-Oriented Memory

Computational intelligence and neuroscience


educational microarchitectures for risc-v isa

An Efficient Runtime Validation Framework based on the Theory of Refinement


Vitis HLS Library for FINN

Memory-Efficient Dataflow Inference for Deep CNNs on FPGA

HALF: Holistic Auto Machine Learning for FPGAs

International Conference on Field-Programmable Logic and Applications

Embedded Object Detection with Custom LittleNet, FINN and Vitis AI DCNN Accelerators

Journal of Low Power Electronics and Applications

Hardware-Efficient Deconvolution-Based GAN for Edge Computing


a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

Parliament2: Accurate structural variant calling at scale

Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing

Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy

Integrating Genetic Structural Variations and Whole-Genome Sequencing Into Clinical Neurology

Mutation Characteristics and Phylogenetic Analysis of Five Leishmania Clinical Isolates


A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

Typometrics: From Implicational to Quantitative Universals in Word Order Typology

Glossa: a journal of general linguistics

An Iwasawa-Taniguchi effect for Compton-thick active galactic nuclei

The Accretion and Obscured Growth of Supermassive Black Holes

The Morpho-kinematic Architecture of Super Star Clusters in the Center of NGC 253

Predicting 3D genome folding from DNA sequence

Separable Layers Enable Structured Efficient Linear Substitutions

Detection of Gravitational Redshift in Open Cluster Nondegenerate Stars

A Global Fit of Non-Relativistic Effective Dark Matter Operators Including Solar Neutrinos


tools for adding mutations to existing .bam files, used for testing mutation callers

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length

Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana

Genome-wide somatic variant calling using localized colored de Bruijn graphs

Cpipe: a shared variant detection pipeline designed for diagnostic settings

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

A comparison of humans and baboons suggests germline mutation rates do not track cell divisions

A community effort to create standards for evaluating tumor subclonal reconstruction

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species


Torch implementation of ResNet from http://arxiv.org/abs/1512.03385 and training scripts

Deep Residual Learning for Image Recognition

Going Deeper with Convolutions

Densely Connected Convolutional Networks

Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

International Journal of Computer Vision

Identity Mappings in Deep Residual Networks

Wide Residual Networks

XNOR-Net: ImageNet Classification Using Binary Convolutional Neural Networks

Cyclical Learning Rates for Training Neural Networks

Deep Networks with Stochastic Depth

Deep Sets


ANTARES Visualizations


emb6 is a scalable C-based 6LoWPAN stack for embedded devices

Connecting the World of Embedded Mobiles: The RIOT Approach to Ubiquitous Networking for the Internet of Things

Open source 6Lo protocol stack for wireless embedded systems

Development of Thread-compatible Open Source Stack


Cell-Based Adaptive Mesh Refinement

MANA for MPI: MPI-Agnostic Network-Agnostic Transparent Checkpointing


Morpheus brings the leading graph query language, Cypher, onto the leading distributed processing platform, Spark.

G-CORE: A Core for Future Graph Query Languages

PG-Schema: Schemas for Property Graphs

Distributed temporal graph analytics with GRADOOP

Incremental View Maintenance for Property Graph Queries

Certified Graph View Maintenance with Regular Datalog

Theory and Practice of Logic Programming

A Framework for Democratizing AI

Semantic Foundations of Seraph Continuous Graph Query Language


WebAssembly Virtual Machine

Faasm: Lightweight Isolation for Efficient Stateful Serverless Computing

Twine: An Embedded Trusted Runtime for WebAssembly

International Conference on Data Engineering

A fast in-place interpreter for WebAssembly

Characterizing and Detecting WebAssembly Runtime Bugs

Copy-and-patch compilation: a fast compilation algorithm for high-level languages and bytecode

VM Matters: A Comparison of WASM VMs and EVMs in the Performance of Blockchain Smart Contracts

Whose baseline compiler is it anyway?

A General Static Binary Rewriting Framework for WebAssembly


Julia implementation for various Frank-Wolfe and Conditional Gradient variants

Learning with Combinatorial Optimization Layers: a Probabilistic Approach

Interpretable Neural Networks with Frank-Wolfe: Sparse Relevance Maps and Relevance Orderings

Conditional Gradient Methods


Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, BasicVSR, SwinIR, ECBSR, etc. Also support StyleGAN2, DFDNet.

Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network

SwinIR: Image Restoration Using Swin Transformer

Recovering Realistic Texture in Image Super-resolution by Deep Spatial Feature Transform

BasicVSR: The Search for Essential Components in Video Super-Resolution and Beyond

GLEAN: Generative Latent Bank for Large-Factor Image Super-Resolution

SynFi: Automatic Synthetic Fingerprint Generation

Rethinking Alignment in Video Super-Resolution Transformers

Semantic-guided Multi-Mask Image Harmonization

GLEAN: Generative Latent Bank for Image Super-Resolution and Beyond

A Unified Conditional Framework for Diffusion-based Image Restoration


Genome assembly evaluation tool

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

HASLR: Fast Hybrid Assembly of Long Reads

Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit

Emergence of Meropenem Resistance Among Cefotaxime Non-susceptible Streptococcus pneumoniae: Evidence and Challenges

Comparison of De Novo Assembly Strategies for Bacterial Genomes

International journal of molecular sciences

Strainline: full-length de novo viral haplotype reconstruction from noisy long reads

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses

Evolution of longitudinal division in multicellular bacteria of the Neisseriaceae family

De novo assembly of human genome at single-cell levels


A minimalist tree plotting library using toyplot graphs

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Feasibility and clinical utility of local rapid Nanopore influenza A virus whole genome sequencing for integrated outbreak management, genotypic resistance detection and timely surveillance

Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance


Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

Going deeper with Image Transformers

MaxViT: Multi-Axis Vision Transformer

Efficient Training of Visual Transformers with Small Datasets

Injecting Semantic Concepts into End-to-End Image Captioning

Three things everyone should know about Vision Transformers

Rethinking Range View Representation for LiDAR Segmentation

COVID-VIT: Classification of COVID-19 from CT chest images based on vision transformer models

Parameter Prediction for Unseen Deep Architectures

SERAB: A multi-lingual benchmark for speech emotion recognition


Darwin Core standard for sharing of information about biological diversity.

Integrating and visualizing primary data from prospective and legacy taxonomic literature

TR-Model. A Metadata Profile Application for Personal Data Transparency

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

Taxonaut: an application software for comparative display of multiple taxonomies with a use case of GBIF Species API

Biodiversity data standards for the organization and dissemination of complex research projects and digital twins: a guide


RESTest: Automated Black-Box Testing of RESTful Web APIs

Automated test generation for REST APIs: no time to rest yet

Proceedings of the 31st ACM SIGSOFT International Symposium on Software Testing and Analysis

Testing RESTful APIs: A Survey

Empirical Comparison of Black-box Test Case Generation Tools for RESTful APIs

Open Problems in Fuzzing RESTful APIs: A Comparison of Tools


Athena++ radiation GRMHD code and adaptive mesh refinement (AMR) framework

The Launching of Cosmic Ray Driven Outflows

The Athena++ Adaptive Mesh Refinement Framework: Multigrid Solvers for Self-gravity

The Evolution of Accreting Binaries: From Brown Dwarfs to Supermassive Black Holes

Dust ring and gap formation by gas flow induced by low-mass planets embedded in protoplanetary disks I. Steady-state model

Effects of planetary day-night temperature gradients on He 1083 nm transit spectra

Implementation of Chemistry in the Athena++ Code

Spin of protoplanets generated by pebble accretion: Influences of protoplanet-induced gas flow

Analytic description of the gas flow around planets embedded in protoplanetary disks

The Optically Thick Rotating Magnetic Wind from a Massive White Dwarf Merger Product. II. Axisymmetric Magnetohydrodynamic Simulations

The Prospects for Hurricane-like Vortices in Protoplanetary Disks


Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

Choosing the right molecular machine learning potential

Machine learning based energy-free structure predictions of molecules, transition states, and solids

Redox-Induced Gating of the Exchange Interactions in a Single Organic Diradical

Tailoring Hot Exciton Dynamics in 2D Hybrid Perovskites through Cation Modification.

cgbind: A Python Module and Web App for Automated Metallocage Construction and Host-Guest Characterization

Journal of Chemical Information and Modeling

Photo- and Collision-Induced Isomerization of a Charge-Tagged Norbornadiene–Quadricyclane System

The journal of physical chemistry letters

A highly unsaturated six-vertex amido-substituted silicon cluster

CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions

SILVR: Guided Diffusion for Molecule Generation

Four-Dimensional-Spacetime Atomistic Artificial Intelligence Models


High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

Embedding Entities and Relations for Learning and Inference in Knowledge Bases

RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space

DGL-KE: Training Knowledge Graph Embeddings at Scale

LibKGE - A knowledge graph embedding library for reproducible research

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING: SYSTEM DEMONSTRATIONS

Marius: Learning Massive Graph Embeddings on a Single Machine

A Survey on the Use of Graph Convolutional Networks for Combating Fake News

Knowledge Graph Completion with Counterfactual Augmentation

The DLCC Node Classification Benchmark for Analyzing Knowledge Graph Embeddings

μKG: A Library for Multi-source Knowledge Graph Embeddings and Applications

Analysis of Drug repurposing Knowledge graphs for Covid-19


Open-source and strong foundation image recognition models.

Recognize Anything: A Strong Image Tagging Model

Tag2Text: Guiding Vision-Language Model via Image Tagging

Open-Set Image Tagging with Multi-Grained Text Supervision

LION : Empowering Multimodal Large Language Model with Dual-Level Visual Knowledge


adaptive 1d numerical Gauss–Kronrod integration in Julia

Modeling High-Frequency Backscattering from a Mesh of Curved Surfaces Using Kirchhoff Approximation

Journal of Theoretical and Computational Acoustics

Algorithms for the computation of the matrix logarithm based on the double exponential formula

Journal of Computational and Applied Mathematics

Oscillations in a Becker-Döring model with injection and depletion

Green's functions of and emission into discrete anisotropic and hyperbolic baths

Learning Continuous Exponential Families Beyond Gaussian

Analysis of Bootstrap and Subsampling in High-dimensional Regularized
  Regression

Lattice Green's Functions for High Order Finite Difference Stencils

A Duet of Freeze-in and Freeze-out: Lepton-Flavored Dark Matter and Muon Colliders

Solving optimal control problems with non-smooth solutions using an integrated residual method and flexible mesh

A plausible link between dynamically unsettled molecular gas and the radio jet in NGC 6328


Gives criticality score for an open source project

An Empirical Study on the Use of Static Analysis Tools in Open Source Embedded Software

Towards a Critical Open-Source Software Database

Lessons from the Long Tail: Analysing Unsafe Dependency Updates across Software Ecosystems


Simulating Many Accelerated Strongly-interacting Hadrons

Multisystem Bayesian constraints on the transport coefficients of QCD matter

Phenomenological Constraints on the Transport Properties of QCD Matter with Data-Driven Model Averaging.

Phase transitions and critical behavior in hadronic transport with a relativistic density functional equation of state

Efficient emulation of relativistic heavy ion collisions with transfer learning

Bayesian calibration of viscous anisotropic hydrodynamic simulations of heavy-ion collisions

Role of bulk viscosity in deuteron production in ultrarelativistic nuclear collisions

Assessing the ultracentral flow puzzle in hydrodynamic modeling of heavy-ion collisions

Quantifying the Quark Gluon Plasma


A set of utilities for exploring Solidity contracts

Slither: A Static Analysis Framework for Smart Contracts

International Workshop on Emerging Trends in Software Engineering for Blockchain

Smart Contract Development from the Perspective of Developers: Topics and Issues Discussed on Social Media

Exploring Security Practices of Smart Contract Developers


Real-time end-to-end singing voice conversion system based on DDSP (Differentiable Digital Signal Processing)

Low-latency Real-time Voice Conversion on CPU


A Python framework for high performance GPU simulation and graphics

ManiSkill2: A Unified Benchmark for Generalizable Manipulation Skills

ANYmal parkour: Learning agile navigation for quadrupedal robots

FluidLab: A Differentiable Environment for Benchmarking Complex Fluid Manipulation

Agile But Safe: Learning Collision-Free High-Speed Legged Locomotion

IndustReal: Transferring Contact-Rich Assembly Tasks from Simulation to Reality

Rethinking Optimization with Differentiable Simulation from a Global Perspective

Dynamic Mesh-Aware Radiance Fields

DexDeform: Dexterous Deformable Object Manipulation with Human Demonstrations and Differentiable Physics

PhysDreamer: Physics-Based Interaction with 3D Objects via Video Generation

cuRobo: Parallelized Collision-Free Minimum-Jerk Robot Motion Generation


The ThingML modelling language

From things' modeling language (ThingML) to things' machine learning (ThingML2)

Proceedings of the 23rd ACM/IEEE International Conference on Model Driven Engineering Languages and Systems: Companion Proceedings

Data Analytics and Machine Learning Methods, Techniques and Tool for Model-Driven Engineering of Smart IoT Services

International Conference on Software Engineering

Supporting AI Engineering on the IoT Edge through Model-Driven TinyML

Annual International Computer Software and Applications Conference

MDE4QAI: Towards Model-Driven Engineering for Quantum Artificial Intelligence

Runtime Monitoring for Executable DSLs

ML-Quadrat & DriotData: A Model-Driven Engineering Tool and a Low-Code Platform for Smart IoT Services

Towards a secure API client generator for IoT devices

Model-Driven Engineering for Artificial Intelligence -- A Systematic Literature Review


HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

The second decade of 3C technologies: detailed insights into nuclear organization

A mini foxtail millet with an Arabidopsis-like life cycle as a C4 model system

Analysis methods for studying the 3D architecture of the genome

Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1

Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma

De novo assembly of a wild pear (Pyrus betuleafolia) genome

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Cohesin residency determines chromatin loop patterns

The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts


A Python interface to map GRIB files to the NetCDF Common Data Model following the CF Convention using ecCodes

OpenForecast v2: Development and Benchmarking of the First National-Scale Operational Runoff Forecasting System in Russia


SpeechIO Leaderboard: a large, robust, comprehensive, benchmarking platform for Automatic Speech Recognition.

WenetSpeech: A 10000+ Hours Multi-domain Mandarin Corpus for Speech Recognition

U2++ MoE: Scaling 4.7x parameters with minimal impact on RTF

SpeechColab Leaderboard: An Open-Source Platform for Automatic Speech
  Recognition Evaluation


displays multiple genomic sequences in the form of a tube map

A new era of long-read sequencing for cancer genomics

Sequence tube maps: making graph genomes intuitive to commuters

MoMI-G: modular multi-scale integrated genome graph browser

Fully-sensitive seed finding in sequence graphs using a hybrid index

Describing the Local Structure of Sequence Graphs


Microsoft Quantum Computing Libraries for noncommercial use

Product Decomposition of Periodic Functions in Quantum Signal Processing

Quantum signal processing for simulating cold plasma waves

Simulation of Linear Non-Hermitian Boundary-Value Problems with Quantum Singular-Value Transformation


a portable and fast pairing-based cryptography library

vChain: Enabling Verifiable Boolean Range Queries over Blockchain Databases

Non-Interactive Private Decision Tree Evaluation

Multi-Zone Authentication and Privacy-Preserving Protocol (MAPP) Based on the Bilinear Pairing Cryptography for 5G-V2X

ZPiE: Zero-Knowledge Proofs in Embedded Systems

zkDL: Efficient Zero-Knowledge Proofs of Deep Learning Training

Key-Aggregate Searchable Encryption, Revisited: Formal Foundations for Cloud Applications, and Their Implementation

Privacy ABCs: Now Ready for Your Wallets!

IEEE International Conference on Pervasive Computing and Communications

zkLLM: Zero Knowledge Proofs for Large Language Models

Cryptographic Protocols for Confidentiality, Authenticity and Privacy on Constrained Devices

International Conference on Ultra Modern Telecommunications

Pisces: Private and Compliable Cryptocurrency Exchange


A set of tools to analyse the output from TraDIS analyses

A decade of advances in transposon-insertion sequencing

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

Essential Role of the ESX-5 Secretion System in Outer Membrane Permeability of Pathogenic Mycobacteria

The Capsule Regulatory Network of Klebsiella pneumoniae Defined by density-TraDISort

The secondary resistome of multidrug-resistant Klebsiella pneumoniae

Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS

A Comprehensive Overview of Online Resources to Identify and Predict Bacterial Essential Genes

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157

Global Analysis of Genes Essential for Francisella tularensis Schu S4 Growth In Vitro and for Fitness during Competitive Infection of Fischer 344 Rats


An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

MLP-Mixer: An all-MLP Architecture for Vision

How to train your ViT? Data, Augmentation, and Regularization in Vision Transformers

LiT: Zero-Shot Transfer with Locked-image text Tuning

When Vision Transformers Outperform ResNets without Pre-training or Strong Data Augmentations

Exploring the Limits of Out-of-Distribution Detection

Transformer for Image Quality Assessment

Surrogate Gap Minimization Improves Sharpness-Aware Training

Emerging trends: A gentle introduction to fine-tuning

A survey of the vision transformers and their CNN-transformer based variants


Python-interface C++ library for Bayesian phylogenetics via optimization

A Variational Approach to Bayesian Phylogenetic Inference

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation


Transfer Learning Library for Domain Adaptation, Task Adaptation, and Domain Generalization

Domain-Adversarial Training of Neural Networks

Unsupervised Domain Adaptation by Backpropagation

Learning Transferable Features with Deep Adaptation Networks

Adversarial Discriminative Domain Adaptation

Deep CORAL: Correlation Alignment for Deep Domain Adaptation

CyCADA: Cycle-Consistent Adversarial Domain Adaptation

Deep Transfer Learning with Joint Adaptation Networks

Conditional Adversarial Domain Adaptation

Maximum Classifier Discrepancy for Unsupervised Domain Adaptation

Invariant Risk Minimization


Hello AI World guide to deploying deep-learning inference networks and deep vision primitives with TensorRT and NVIDIA Jetson.

Deep Learning Framework for Vehicle and Pedestrian Detection in Rural Roads on an Embedded GPU

Detecting Diabetic Retinopathy Using Embedded Computer Vision

Artificial Intelligence for Colonoscopy: Past, Present, and Future

IEEE journal of biomedical and health informatics

Real-Time Robot Localization, Vision, and Speech Recognition on Nvidia Jetson TX1

Service Orchestration for Object Detection on Edge and Cloud in Dependable Industrial Vehicles

An early warning AI-powered portable system to reduce workload and inspect environmental damage after natural disasters

Decentralised Intelligence, Surveillance, and Reconnaissance in Unknown Environments with Heterogeneous Multi-Robot Systems

AirLoop: A Simulation Framework for Testing of UAV Services


Universal Sentence Encoder

Stanza: A Python Natural Language Processing Toolkit for Many Human Languages

Synthetic and Natural Noise Both Break Neural Machine Translation

Robustness Gym: Unifying the NLP Evaluation Landscape

TextFlint: Unified Multilingual Robustness Evaluation Toolkit for Natural Language Processing

Adversarial Augmentation Policy Search for Domain and Cross-Lingual Generalization in Reading Comprehension

Distinguishing Non-natural from Natural Adversarial Samples for More Robust Pre-trained Language Model


Read and write Neuroglancer datasets programmatically.

Functional connectomics spanning multiple areas of mouse visual cortex

Cellular anatomy of the mouse primary motor cortex

Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy

Petascale neural circuit reconstruction: automated methods

The Brain Observatory Storage Service and Database (BossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery

MagC, magnetic collection of ultrathin sections for volumetric correlative light and electron microscopy

A scalable and modular automated pipeline for stitching of large electron microscopy datasets

Deep Lake: a Lakehouse for Deep Learning

CAVE: Connectome Annotation Versioning Engine

bioRxiv : the preprint server for biology

Unveiling universal aspects of the cellular anatomy of the brain


Muzic: Music Understanding and Generation with Artificial Intelligence

MusicBERT: Symbolic Music Understanding with Large-Scale Pre-Training

SongMASS: Automatic Song Writing with Pre-training and Alignment Constraint

Museformer: Transformer with Fine- and Coarse-Grained Attention for Music Generation

TeleMelody: Lyric-to-Melody Generation with a Template-Based Two-Stage Method

DeepRapper: Neural Rap Generation with Rhyme and Rhythm Modeling

BERT-like Pre-training for Symbolic Piano Music Classification Tasks

MuseCoco: Generating Symbolic Music from Text

CLaMP: Contrastive Language-Music Pre-training for Cross-Modal Symbolic Music Information Retrieval

ReLyMe: Improving Lyric-to-Melody Generation by Incorporating Lyric-Melody Relationships

Proceedings of the 30th ACM International Conference on Multimedia

MusicAgent: An AI Agent for Music Understanding and Generation with Large Language Models


Software for generating machine-learning interatomic potentials for LAMMPS

Explicit Multielement Extension of the Spectral Neighbor Analysis Potential for Chemically Complex Systems

Dissociating the phononic, magnetic and electronic contributions to thermal conductivity: a computational study in alpha-iron

Machine learned interatomic potential for dispersion strengthened plasma facing components

Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials

UV-Visible Absorption Spectra of Solvated Molecules by Quantum Chemical Machine Learning.

Journal of chemical theory and computation

Atomic cluster expansion and wave function representations

Atomic Representations of Local and Global Chemistry in Complex Alloys


Julia package for automatically generating Bayesian inference algorithms through message passing on Forney-style factor graphs.

A factor graph approach to automated design of Bayesian signal processing algorithms

International Journal of Approximate Reasoning

Simulating Active Inference Processes by Message Passing

Extended Variational Message Passing for Automated Approximate Bayesian Inference

Active Inference and Epistemic Value in Graphical Models


Framework for the reproducible processing of neuroimaging data with deep learning methods

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation

Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder

Hippocampal‐amygdalo‐ventricular atrophy score: Alzheimer disease detection using normative and pathological lifespan models

Towards better Interpretable and Generalizable AD detection using Collective Artificial Intelligence

An overview of open source Deep Learning-based libraries for Neuroscience


Chemical Information from the Web

DoOR 2.0 - Comprehensive Mapping of Drosophila melanogaster Odorant Responses

webchem: An R Package to Retrieve Chemical Information from the Web

Development of quantitative screen for 1550 chemicals with GC-MS

Probing the chemical-biological relationship space with the Drug Target Explorer

Comparison of Mainstream Smoke Composition from CR20 Resin Filter and Empty-Cavity Filter Cigarettes by Headspace SPME Coupled with GC×GC TOFMS and Chemometric Analysis

Beiträge zur Tabakforschung international