Tensorflow + Molecules = TensorMol

Generating Sequences With Recurrent Neural Networks

Machine Learning Force Fields

Recent advances and applications of deep learning methods in materials science

Metadynamics for training neural network model chemistries: A competitive assessment

Machine learning in materials modeling—fundamentals and the opportunities in 2D materials


LibOPF is a library of functions and programs for free usage in the design of optimum-path forest classifiers.

A metaheuristic-driven approach to fine-tune Deep Boltzmann Machines

A Novel Approach for Optimum-Path Forest Classification Using Fuzzy Logic

Opytimizer: A Nature-Inspired Python Optimizer

Hierarchical Learning Using Deep Optimum-Path Forest

Journal of Visual Communication and Image Representation

Intelligent IoT security monitoring based on fuzzy optimum-path forest classifier

Soft Computing - A Fusion of Foundations, Methodologies and Applications

FEMa-FS: Finite Element Machines for Feature Selection

International Conference on Pattern Recognition


Tips for releasing research code in Machine Learning (with official NeurIPS 2020 recommendations)

A Troubling Analysis of Reproducibility and Progress in Recommender Systems Research

ACM transactions on office information systems

Split Computing and Early Exiting for Deep Learning Applications: Survey and Research Challenges

torchdistill: A Modular, Configuration-Driven Framework for Knowledge Distillation

Reproducible Research in Pattern Recognition

Yet Another ICU Benchmark: A Flexible Multi-Center Framework for Clinical ML

Benchmarking framework for machine learning classification from fNIRS data


Framework for testing models with AI2 leaderboards

Do Fine-tuned Commonsense Language Models Really Generalize?

Understanding Prior Bias and Choice Paralysis in Transformer-based Language Representation Models through Four Experimental Probes

A Formalism and Approach for Improving Robustness of Large Language Models Using Risk-Adjusted Confidence Scores


Basic sanity checks for MOFs.

An Extended Charge Equilibration Method

The journal of physical chemistry letters

Connecting lab experiments with computer experiments: Making "routine" simulations routine

MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Discovery of novel reticular materials for carbon dioxide capture using GFlowNets


Public repository of the META-SHARE software

The META-SHARE Language Resources Sharing Infrastructure: Principles, Challenges, Solutions

The META-SHARE Metadata Schema for the Description of Language Resources

RDF Representation of Licenses for Language Resources

Proceedings of the 4th Workshop on Linked Data in Linguistics: Resources and Applications

META-SHARE: One year after

META-SHARE v2: An Open Network of Repositories for Language Resources including Data and Tools

CLARIN: Distributed Language Resources and Technology in a European Infrastructure

A Data Sharing and Annotation Service Infrastructure

PROCEEDINGS OF THE 53RD ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS AND THE 7TH INTERNATIONAL JOINT CONFERENCE ON NATURAL LANGUAGE PROCESSING (ACL-IJCNLP 2015): SYSTEM DEMONSTRATIONS


Massively parallel hybrid particle-field molecular dynamics in Python.

HylleraasMD: A Domain Decomposition-Based Hybrid Particle-Field Software for Multiscale Simulations of Soft Matter

Journal of chemical theory and computation

Soft Matter under Pressure: Pushing Particle-Field Molecular Dynamics to the Isobaric Ensemble

Journal of chemical information and modeling

HylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Python


Repository for EcoSimR, by Gotelli, N.J. , Hart E. M. and A.M. Ellison. 2014. EcoSimR 0.1.0

Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data

Archaea in boreal Swedish lakes are diverse, dominated by Woesearchaeota and follow deterministic community assembly

Spatial and Dietary Overlap Creates Potential for Competition between Red Snapper (Lutjanus campechanus) and Vermilion snapper (Rhomboplites aurorubens)

Niche overlap and species co-occurrence patterns in carabid communities of the northern Chinese steppes

The effects of pastoral intensification on the feeding interactions of generalist predators in streams

Consumption Patterns of a Generalist Omnivore: Eastern Box Turtle Diets in the Long Island Pine Barrens

Seasonal and Soil Microbiota Effects on the Adaptive Strategies of Wild Goitered Gazelles Based on the Gut Microbiota

Deep-Sea Nematodes of the Mozambique Channel: Evidence of Random Community Assembly Dynamics in Seep Sediments

Main Factors Influencing the Gut Microbiota of Datong Yaks in Mixed Group

Animals : an open access journal from MDPI

Symptomatic and Asymptomatic Protist Infections in Hospital Inpatients in Southwestern China


Perform stellar classifications using isochrone grids

The California-Kepler Survey. IV. Metal-rich Stars Host a Greater Diversity of Planets

Asteroseismology and Gaia: Testing Scaling Relations Using 2200 Kepler Stars with TGAS Parallaxes

The California-Kepler Survey. II. Precise Physical Properties of 2025 Kepler Planets and Their Host Stars

A Hot Saturn Orbiting an Oscillating Late Subgiant Discovered by TESS

Planet Candidates from K2 Campaigns 5–8 and Follow-up Optical Spectroscopy

A 'Quick Look' at All-Sky Galactic Archeology with TESS: 158,000 Oscillating Red Giants from the MIT Quick-Look Pipeline

K2-231 b: A Sub-Neptune Exoplanet Transiting a Solar Twin in Ruprecht 147

Discovery of a Transiting Adolescent Sub-Neptune Exoplanet with K2

The masses of retired A stars with asteroseismology: Kepler and K2 observations of exoplanet hosts

Monthly Notices of the Royal Astronomical Society

The Curious Case of KOI 4: Confirming Kepler's First Exoplanet Detection


LibAUC: A Deep Learning Library for X-Risk Optimization

Large-scale Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification

DORA: Exploring Outlier Representations in Deep Neural Networks

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining


NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations

Brain lesions disrupting addiction map to a common human brain circuit

Removal of artifacts from resting-state fMRI data in stroke

A lesion and connectivity-based hierarchical model of chronic aphasia recovery dissociates patients and healthy controls

Disruptions of the Human Connectome Associated With Hemispatial Neglect

Impairments in Emotion Recognition and Risk-Taking Behavior After Isolated, Cerebellar Stroke

Dissociable contributions of frontal and temporal brain regions to basic semantic composition

Consequence of stroke for feature recall and binding in visual working memory

Right- and Left-Lateralised Neglect are not Anatomically Homologous: A Voxel-Lesion Symptom Mapping Study

Recursive hierarchical embedding in vision is impaired by posterior middle temporal gyrus lesions

The impact of etiology in lesion-symptom mapping – A direct comparison between tumor and stroke


A collection of usefull tools for RAD or GBS data analysis

Transposon activation is a major driver in the genome evolution of cultivated olive trees (Olea europaea L.)

Selection-driven trait loss in independently evolved cavefish populations

Phylogenomic analyses confirm a novel invasive North American Corbicula (Bivalvia: Cyrenidae) lineage.

Convergent morphology and divergent phenology promote the coexistence of Morpho butterfly species

Worldwide Population Structure of the Coffee Rust Fungus Hemileia vastatrix Is Strongly Shaped by Local Adaptation and Breeding History

Geographical Patterns of Genetic Variation in Locoto Chile (Capsicum pubescens) in the Americas Inferred by Genome-Wide Data Analysis

New insights on adaptation and population structure of cork oak using genotyping by sequencing

Evolutionary relationships, hybridization and diversification under domestication of the locoto chile (Capsicum pubescens) and its wild relatives


An implementation of Hoare and He's Unifying Theories of Programming in Isabelle

Unifying semantic foundations for automated verification tools in Isabelle/UTP

Unifying theories of reactive design contracts

Automating Verification of State Machines with Reactive Designs and Isabelle/UTP

Unifying theories of time with generalised reactive processes

Towards Deductive Verification of Control Algorithms for Autonomous Marine Vehicles

International Conference on Engineering of Complex Computer Systems

Calculational Verification of Reactive Programs with Reactive Relations and Kleene Algebra

Automated verification of reactive and concurrent programs by calculation

Journal of Logical and Algebraic Methods in Programming

A Unary Semigroup Trace Algebra

Relational and Algebraic Methods in Computer Science


R Wrapper for Tetrad Library

Large-scale empirical validation of Bayesian Network structure learning algorithms with noisy data

Bayesian network structure learning with causal effects in the presence of latent variables

Hybrid Bayesian network discovery with latent variables by scoring multiple interventions

Discovery and density estimation of latent confounders in Bayesian networks with evidence lower bound


Qclib is a quantum computing library implemented using qiskit. The focus of qclib is on preparing quantum states, but it is not limited to that.

A divide-and-conquer algorithm for quantum state preparation

Linear-depth quantum circuits for multiqubit controlled gates

Double sparse quantum state preparation

Decomposition of Multi-controlled Special Unitary Single-Qubit Gates

Low-Rank Quantum State Preparation

Linear decomposition of approximate multi-controlled single qubit gates

Implementing multi-controlled X gates using the quantum Fourier transform


PySM 3: Sky emission simulations for Cosmic Microwave Background experiments

Minkowski Functionals of CMB polarisation intensity with Pynkowski: theory and application to Planck and future data

Multi-Clustering Needlet-ILC for CMB B-modes component separation

Analysis of NILC performance on B-modes data of sub-orbital experiments

LiteBIRD science goals and forecasts: a full-sky measurement of gravitational lensing of the CMB


DALI Multi Agent System Framework

Logic-based technologies for multi-agent systems: a systematic literature review

Autonomous Agents and Multi-Agent Systems

Overview of Software Agent Platforms Available in 2023

Ensuring trustworthy and ethical behaviour in intelligent logical agents


A Python package to learn the Koopman operator.

Learning Dynamical Systems via Koopman Operator Regression in Reproducing Kernel Hilbert Spaces

Sharp Spectral Rates for Koopman Operator Learning

Koopman Kernel Regression

Consistent Long-Term Forecasting of Ergodic Dynamical Systems

A randomized algorithm to solve reduced rank operator regression


An open-source toolbox for the evaluation of thermal response factors (g-functions) of geothermal borehole fields.


db-CBS: Discontinuity-Bounded Conflict-Based Search for Multi-Robot Kinodynamic Motion Planning

iDb-A*: Iterative Search and Optimization for Optimal Kinodynamic Motion Planning

Kinodynamic Motion Planning for a Team of Multirotors Transporting a Cable-Suspended Payload in Cluttered Environments


Package for fitting Gaussian Process Emulators to multiple output computer simulation results.

VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Probabilistic quantification of tsunami current hazard using statistical emulation

Proceedings. Mathematical, physical, and engineering sciences

Gaussian Process-Driven History Matching for Physical Layer Parameter Estimation in Optical Fiber Communication Networks

Uncertainty quantification of dynamic earthquake rupture simulations


rFIA

rFIA: An R package for estimation of forest attributes with the US Forest Inventory and Analysis database


A pytorch implementation for paper 'Exploring Simple Siamese Representation Learning'

The Unreasonable Effectiveness of Fully-Connected Layers for Low-Data Regimes

Towards Efficient and Effective Self-Supervised Learning of Visual Representations

Backdoor Contrastive Learning via Bi-level Trigger Optimization

InfoNCE: Identifying the Gap Between Theory and Practice


Chinese-Vicuna: A Chinese Instruction-following LLaMA-based Model —— 一个中文低资源的llama+lora方案，结构参考alpaca

LLaMA: Open and Efficient Foundation Language Models

LoRA: Low-Rank Adaptation of Large Language Models

Self-Instruct: Aligning Language Models with Self-Generated Instructions

GPT Can Solve Mathematical Problems Without a Calculator

LLaMA-Reviewer: Advancing Code Review Automation with Large Language Models through Parameter-Efficient Fine-Tuning

Examining User-Friendly and Open-Sourced Large GPT Models: A Survey on Language, Multimodal, and Scientific GPT Models


Learning to detect an animal sound from five examples

Few-shot bioacoustic event detection at the DCASE 2022 challenge

Surrey System for DCASE 2022 Task 5: Few-shot Bioacoustic Event Detection with Segment-level Metric Learning

Few-shot bioacoustic event detection at the DCASE 2023 challenge

Mind the Domain Gap: a Systematic Analysis on Bioacoustic Sound Event
  Detection


A high throughput sequence read  toolset using a streaming approach facilitated by Linux pipes

Cytokinin but not gibberellin application had major impact on the phenylpropanoid pathway in grape

A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery

Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria

Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation

Homeostatic plasticity fails at the intersection of autism-gene mutations and a novel class of common genetic modifiers

Serotype I and II Feline Coronavirus Replication and Gene Expression Patterns of Feline Cells—Building a Better Understanding of Serotype I FIPV Biology

Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections

Dual transcriptomic analysis reveals metabolic changes associated with differential persistence of human pathogenic bacteria in leaves of Arabidopsis and lettuce

Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris)

Host transcriptional responses in nasal swabs identify potential SARS-CoV-2 infection in PCR negative patients


Performance Analysis of DNN Inference/Training with Convolution and non-Convolution Operations


Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline

Noninvasive quantification of axon radii using diffusion MRI

White matter microstructure across the adult lifespan: A mixed longitudinal and cross-sectional study using advanced diffusion models and brain-age prediction

Towards an optimised processing pipeline for diffusion magnetic resonance imaging data: Effects of artefact corrections on diffusion metrics and their age associations in UK Biobank

CHIMGEN: a Chinese imaging genetics cohort to enhance cross-ethnic and cross-geographic brain research

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project

Diffusion imaging of reversible and irreversible microstructural changes within the corticospinal tract in idiopathic normal pressure hydrocephalus

Nanostructure-specific X-ray tomography reveals myelin levels, integrity and axon orientations in mouse and human nervous tissue

Comprehensive diffusion MRI dataset for in vivo human brain microstructure mapping using 300 mT/m gradients

Diffusional kurtosis imaging and white matter microstructure modeling in a clinical study of major depressive disorder

Axonal damage in the optic radiation assessed by white matter tract integrity metrics is associated with retinal thinning in multiple sclerosis


Python API for the WRF-Hydro model


PartitionFinder discovers optimal partitioning schemes for DNA sequences.

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.

Selecting optimal partitioning schemes for phylogenomic datasets

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates

Global radiation in a rare biosphere soil diatom

The First Five Mitochondrial Genomes for the Family Nidulariaceae Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of Agaricales

International journal of molecular sciences

Using mitochondrial genomes to infer phylogenetic relationships among the oldest extant winged insects (Palaeoptera)

Three mitochondrial genomes of early-winged insects (Ephemeroptera: Baetidae and Leptophlebiidae)


Hierarchical meta-d' model

HMeta-d: hierarchical Bayesian estimation of metacognitive efficiency from confidence ratings

Metacognitive Failure as a Feature of Those Holding Radical Beliefs

Forming global estimates of self-performance from local confidence

Is There a G Factor for Metacognition? Correlations in Retrospective Metacognitive Sensitivity Across Tasks

Journal of experimental psychology. General

The Filter Detection Task for measurement of breathing-related interoception and metacognition

Perceptual metacognition of human faces is causally supported by function of the lateral prefrontal cortex

Developmental trajectories of metacognitive processing and executive function from childhood to older age

Quarterly journal of experimental psychology (2006)

The positive evidence bias in perceptual confidence is unlikely post-decisional

Skill and self-knowledge: empirical refutation of the dual-burden account of the Dunning–Kruger effect

Preserved metacognition despite impaired perception of intentionality cues in schizophrenia


Flood-Filling Networks for instance segmentation in 3d volumes.

Large Volume Electron Microscopy and Neural Microcircuit Analysis

Flood-Filling Networks

AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions


Genetic Programming in Python, with a scikit-learn inspired API

KAN: Kolmogorov-Arnold Networks

Taylor Genetic Programming for Symbolic Regression

A Framework Based on Symbolic Regression Coupled with eXtended Physics-Informed Neural Networks for Gray-Box Learning of Equations of Motion from Data

STREAMLINE: A Simple, Transparent, End-To-End Automated Machine Learning Pipeline Facilitating Data Analysis and Algorithm Comparison

AI-Aristotle: A physics-informed framework for systems biology gray-box identification

Analysing symbolic regression benchmarks under a meta-learning approach

Proceedings of the Genetic and Evolutionary Computation Conference Companion

EC-KitY: Evolutionary computation tool kit in Python with seamless machine learning integration

Generating Synergistic Formulaic Alpha Collections via Reinforcement Learning

Probabilistic Lexicase Selection

Comparing data driven and physics inspired models for hopping transport in organic field effect transistors


DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

Epigenomic language models powered by Cerebras

DNABERT-based explainable lncRNA identification in plant genome assemblies

Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings


a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage: interactive visualisation of de novo genome assemblies

Presence of Mobile Tigecycline Resistance Gene tet(X4) in Clinical Klebsiella pneumoniae

Comparison of De Novo Assembly Strategies for Bacterial Genomes

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Phenotypic and genotypic features of the Mycobacterium tuberculosis lineage 1 subgroup in central Vietnam

Complete chloroplast genome sequence of Oxytropis glabra (Leguminosae)

Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus

The complete diploid reference genome of RPE-1 identifies human phased epigenetic landscapes

bioRxiv : the preprint server for biology


This is a collection of our research on efficient AI, covering hardware-aware NAS and model compression.

ElasticViT: Conflict-aware Supernet Training for Deploying Fast Vision Transformer on Diverse Mobile Devices

Compresso: Structured Pruning with Collaborative Prompting Learns Compact Large Language Models

Constraint-aware and Ranking-distilled Token Pruning for Efficient Transformer Inference

SpaceEvo: Hardware-Friendly Search Space Design for Efficient INT8 Inference


Geometric loss functions between point clouds, images and volumes

Deep Generalized Schrödinger Bridge

A Neural Tangent Kernel Perspective of GANs

Mirror Diffusion Models for Constrained and Watermarked Generation

On Leveraging the Visual Modality for Neural Machine Translation

Knowledge Distillation for 6D Pose Estimation by Aligning Distributions of Local Predictions

KNOT: Knowledge Distillation using Optimal Transport for Solving NLP Tasks

Estimating Regression Predictive Distributions with Sample Networks

Impact of data for forecasting on performance of model predictive control in buildings with smart energy storage

Federated Distillation of Natural Language Understanding with Confident Sinkhorns.


Trained caffe models

Protein-Ligand Scoring with Convolutional Neural Networks

3D Convolutional Neural Networks and a CrossDocked Dataset for Structure-Based Drug Design

Visualizing Convolutional Neural Network Protein-Ligand Scoring

Journal of molecular graphics & modelling

libmolgrid: GPU Accelerated Molecular Gridding for Deep Learning Applications

An Equivariant Generative Framework for Molecular Graph-Structure Co-Design

MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space


ARC RDF Classes for PHP

Semantic Web repositories for genomics data using the eXframe platform

Knowledge sharing and collaboration in translational research, and the DC-THERA Directory

Pain Research Forum: application of scientific social media frameworks in neuroscience

Alignment: A Hybrid, Interactive and Collaborative Ontology and Entity Matching Service

RDFIO: extending Semantic MediaWiki for interoperable biomedical data management

Semantic web applications with regard to math and environment


Recopilación de datos de COVID19 por provincias en España

COnVIDa: COVID-19 multidisciplinary data collection and dashboard

Mass gathering events and the spread of infectious diseases: Evidence from the early growth phase of COVID-19

Clustering spatio-temporal series of confirmed COVID-19 deaths in Europe

Disparities in the Evolution of the COVID-19 Pandemic between Spanish Provinces

International journal of environmental research and public health

On the association between COVID-19 vaccination levels and incidence and lethality rates at a regional scale in Spain

Vaccination compartmental epidemiological models for the delta and omicron SARS-CoV-2 variants


Optimal cutpoints in R: determining and validating optimal cutpoints in binary classification

Differential levels of plasma biomarkers of neurodegeneration in Lewy body dementia, Alzheimer’s disease, frontotemporal dementia and progressive supranuclear palsy

Journal of neurology, neurosurgery, and psychiatry

A Transcriptomic Analysis of Head and Neck Squamous Cell Carcinomas for Prognostic Indications

Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell Carcinoma

Oats Lower Age-Related Systemic Chronic Inflammation (iAge) in Adults at Risk for Cardiovascular Disease

Prediction of Adrenocortical Carcinoma Relapse and Prognosis with a Set of Novel Multigene Panels


An Open Source Tools for Speaker Recognition

Improving Accent Identification and Accented Speech Recognition Under a Framework of Self-supervised Learning

Oriental Language Recognition (OLR) 2020: Summary and Analysis

ASVtorch toolkit: Speaker verification with deep neural networks

Towards A Unified Conformer Structure: from ASR to ASV Task

When Speaker Recognition Meets Noisy Labels: Optimizations for Front-ends and Back-ends

IEEE/ACM Transactions on Audio, Speech, and Language Processing

Wavelet Scattering Transform for Improving Generalization in Low-Resourced Spoken Language Identification


STAR based ENCODE Long RNA-Seq processing pipeline

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients

Bcl11b sets pro-T cell fate by site-specific cofactor recruitment and by repressing Id2 and Zbtb16

Landscape of innate lymphoid cells in human head and neck cancer reveals divergent NK cell states in the tumor microenvironment

Proceedings of the National Academy of Sciences of the United States of America

The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation

Cell type–specific actions of Bcl11b in early T-lineage and group 2 innate lymphoid cells

Global translation during early development depends on the essential transcription factor PRDM10

The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling

Loss of Nup210 results in muscle repair delays and age-associated alterations in muscle integrity

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments


API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R

Retrieving and processing agro-meteorological data from API-client sources using R software


Ethereum contract for Bitcoin SPV: Live on https://etherscan.io/address/0x41f274c0023f83391de4e0733c609df5a124c3d4

A Survey on Blockchain Interoperability: Past, Present, and Future Trends

Enabling Cross-Chain Transactions: A Decentralized Cryptocurrency Exchange Protocol

Towards Interoperable Blockchains: A Survey on the Role of Smart Contracts in Blockchain Interoperability

Atomic Crosschain Transactions for Ethereum Private Sidechains

Survey of crosschain communications protocols

A Game-Theoretic Analysis of Cross-Chain Atomic Swaps with HTLCs

A Survey on Cross-Chain Technology: Challenges, Development, and Prospect

Verilay: A Verifiable Proof of Stake Chain Relay

SmartSync: Cross-Blockchain Smart Contract Interaction and Synchronization

Verifiable Computing Applications in Blockchain


Train Gradient Boosting models that are both high-performance *and* Fair!

Equality of Opportunity in Supervised Learning

Promoting Fairness through Hyperparameter Optimization

FairGBM: Gradient Boosting with Fairness Constraints


Norwegian Transformer Model

Benchmarking Zero-shot Text Classification: Datasets, Evaluation and Entailment Approach

Operationalizing a National Digital Library: The Case for a Norwegian Transformer Model

Large-Scale Contextualised Language Modelling for Norwegian

Occupational Biases in Norwegian and Multilingual Language Models

Proceedings of the 4th Workshop on Gender Bias in Natural Language Processing (GeBNLP)

NorDial: A Preliminary Corpus of Written Norwegian Dialect Use

Training a T5 Using Lab-sized Resources

Measuring Normative and Descriptive Biases in Language Models Using Census Data


Generic framework for historical document processing

dhSegment: A generic deep-learning approach for document segmentation

PROCEEDINGS 2018 16TH INTERNATIONAL CONFERENCE ON FRONTIERS IN HANDWRITING RECOGNITION (ICFHR)

READ-BAD: A New Dataset and Evaluation Scheme for Baseline Detection in Archival Documents

Combining Visual and Textual Features for Semantic Segmentation of Historical Newspapers

Zenodo (CERN European Organization for Nuclear Research)

Multiple Document Datasets Pre-training Improves Text Line Detection With Deep Neural Networks


Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Resistance mechanisms and population structure of highly drug resistant Klebsiella in Pakistan during the introduction of the carbapenemase NDM-1

Prevalence of hypervirulent and carbapenem-resistant Klebsiella pneumoniae under divergent evolutionary patterns

Global Trends in Proteome Remodeling of the Outer Membrane Modulate Antimicrobial Permeability in Klebsiella pneumoniae

Characterization of phage resistance and phages capable of intestinal decolonization of carbapenem-resistant Klebsiella pneumoniae in mice


Language model fine-tuning on NER with an easy interface and cross-domain evaluation. "T-NER: An All-Round Python Library for Transformer-based Named Entity Recognition, EACL 2021"

EACL 2021: THE 16TH CONFERENCE OF THE EUROPEAN CHAPTER OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS: PROCEEDINGS OF THE SYSTEM DEMONSTRATIONS

Location reference recognition from texts: A survey and comparison

Named Entity Recognition in Twitter: A Dataset and Analysis on Short-Term Temporal Shifts

A Multilingual Evaluation of NER Robustness to Adversarial Inputs


MPyC: Multiparty Computation in Python

Precision Health Data: Requirements, Challenges and Existing Techniques for Data Security and Privacy

DLT Based Authentication Framework for Industrial IoT Devices

SecureFedYJ: a safe feature Gaussianization protocol for Federated Learning

HACCLE: metaprogramming for secure multi-party computation

Proceedings of the 20th ACM SIGPLAN International Conference on Generative Programming: Concepts and Experiences

PoS4MPC: Automated Security Policy Synthesis for Secure Multi-party Computation

A Verifiable Multiparty Computation Solver for the Assignment Problem and Applications to Air Traffic Management

Symphony: Expressive Secure Multiparty Computation with Coordination


[ICML 2024] SqueezeLLM: Dense-and-Sparse Quantization

LLaMA: Open and Efficient Foundation Language Models

Llama 2: Open Foundation and Fine-Tuned Chat Models


ROS network stack: Topic/service transport over unreliable network connections

NimbRo Rescue: Solving Disaster-Response Tasks through Mobile Manipulation Robot Momaro

CERBERUS: Autonomous Legged and Aerial Robotic Exploration in the Tunnel and Urban Circuits of the DARPA Subterranean Challenge

Multi-Agent Autonomy: Advancements and Challenges in Subterranean Exploration

Team NimbRo at MBZIRC 2017: Fast landing on a moving target and treasure hunting with a team of micro aerial vehicles

Supervised Autonomy for Exploration and Mobile Manipulation in Rough Terrain with a Centaur-Like Robot

Robust Immersive Telepresence and Mobile Telemanipulation: NimbRo wins ANA Avatar XPRIZE Finals

Team CERBERUS Wins the DARPA Subterranean Challenge: Technical Overview and Lessons Learned

Online Visual Robot Tracking and Identification using Deep LSTM Networks

Bimanual telemanipulation with force and haptic feedback through an anthropomorphic avatar system

MRS Drone: A Modular Platform for Real-World Deployment of Aerial Multi-Robot Systems


A Wes Anderson color palette for R

Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

The sensitivity of modeled snow accumulation and melt to precipitation phase methods across a climatic gradient

High-resolution genome-wide functional dissection of transcriptional regulatory regions in human

Transcriptional-regulatory convergence across functional MDD risk variants identified by massively parallel reporter assays

Evaluating the bio-economic performance of a Callo de hacha (Atrina maura, Atrina tuberculosa & Pinna rugosa) fishery restoration plan in La Paz, Mexico

Shedding light on large-scale solar impacts: An analysis of property values and proximity to photovoltaics across six U.S. states

Cuvier's beaked whale foraging dives identified via machine learning using depth and triaxial acceleration

Gridlines approach for dynamic analysis in speech ultrasound data: A multimodal app

Techniques and Methods for Investigating Speech Articulation


Astronomy related procedures in the commercial IDL language

TESS Reveals that the Nearby Pisces-Eridanus Stellar Stream is only 120 Myr Old

The GALAH survey: the data reduction pipeline

Monthly Notices of the Royal Astronomical Society

Evidence of Particle Acceleration in the Superbubble 30 Doradus C with NuSTAR

NuSTAR Observations of G11.2–0.3

Marginalised Normal Regression: Unbiased curve fitting in the presence of x-errors

Gaia FGK benchmark stars: Fundamental Teff and log g of the third version


Scalable gVCF merging and joint variant calling for population sequencing projects

Accurate, scalable cohort variant calls using DeepVariant and GLnexus

GLnexus: joint variant calling for large cohort sequencing

Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

Protocol for unbiased, consolidated variant calling from whole exome sequencing data


A simple, fully convolutional model for real-time instance segmentation.

YOLACT: Real-time Instance Segmentation

Enhancing Geometric Factors in Model Learning and Inference for Object Detection and Instance Segmentation

Human segmentation in surveillance video with deep learning

Dynamic Object Tracking and Masking for Visual SLAM

Metamorphic Testing for Object Detection Systems

Developing a Free and Open-Source Semi-Automated Building Exterior Crack Inspection Software for Construction and Facility Managers


Implementation of Analyzing and Improving the Image Quality of StyleGAN (StyleGAN 2) in PyTorch

Closed-Form Factorization of Latent Semantics in GANs

HyperStyle: StyleGAN Inversion with HyperNetworks for Real Image Editing

Few-shot Image Generation via Cross-domain Correspondence

StyleGAN-V: A Continuous Video Generator with the Price, Image Quality and Perks of StyleGAN2

Exploiting Spatial Dimensions of Latent in GAN for Real-time Image Editing

Lifting 2D StyleGAN for 3D-Aware Face Generation

Anycost GANs for Interactive Image Synthesis and Editing

The Geometry of Deep Generative Image Models and its Applications

Intermediate Layer Optimization for Inverse Problems using Deep Generative Models


Pretrained DeepLabv3 and DeepLabv3+ for Pascal VOC & Cityscapes

Encoder-Decoder with Atrous Separable Convolution for Semantic Image Segmentation

Rethinking Atrous Convolution for Semantic Image Segmentation

Medical Image Segmentation Using Squeeze-and-Expansion Transformers

ReCo: Retrieve and Co-segment for Zero-shot Transfer

LIF-Seg: LiDAR and Camera Image Fusion for 3D LiDAR Semantic Segmentation

GDP: Stabilized Neural Network Pruning via Gates with Differentiable Polarization

Semantic segmentation of fruits on multi-sensor fused data in natural orchards

Harmonic Convolutional Networks based on Discrete Cosine Transform

DCSegNet: Deep Learning Framework Based on Divide-and-Conquer Method for Liver Segmentation

SAMScore: A Semantic Structural Similarity Metric for Image Translation Evaluation


Multi-Turn Response Selection for Chatbots with Deep Attention Matching Network

PROCEEDINGS OF THE 56TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL), VOL 1

One Time of Interaction May Not Be Enough: Go Deep with an Interaction-over-Interaction Network for Response Selection in Dialogues

Meeting of the Association for Computational Linguistics

Proactive Human-Machine Conversation with Explicit Conversation Goals

What does BERT know about books, movies and music? Probing BERT for Conversational Recommendation

RECSYS 2020: 14TH ACM CONFERENCE ON RECOMMENDER SYSTEMS

IART: Intent-aware Response Ranking with Transformers in Information-seeking Conversation Systems

Discovering Dialog Structure Graph for Open-Domain Dialog Generation

Learning to Expand: Reinforced Pseudo-relevance Feedback Selection for Information-seeking Conversations


Earth-2 Model Intercomparison Project (MIP) is a python framework that enables climate researchers and scientists to inter-compare AI models for weather and climate.

FourCastNet: A Global Data-driven High-resolution Weather Model using Adaptive Fourier Neural Operators

Spherical Fourier Neural Operators: Learning Stable Dynamics on the Sphere

A Practical Probabilistic Benchmark for AI Weather Models

Advancing Parsimonious Deep Learning Weather Prediction using the HEALPix Mesh

Coupled Ocean-Atmosphere Dynamics in a Machine Learning Earth System
  Model

Analyzing and Exploring Training Recipes for Large-Scale
  Transformer-Based Weather Prediction


Depends is a fast, comprehensive code dependency analysis tool

PyCG: Practical Call Graph Generation in Python

E-SC4R: Explaining Software Clustering for Remodularisation

On the Opportunities of Green Computing: A Survey

Automated regression unit test generation for program merges

Software Architecture Recovery with Information Fusion

An Empirical Study of Untangling Patterns of Two-Class Dependency Cycles

Cross-Language Dependencies: An Empirical Study of Kotlin-Java


[EMNLP 2023 Demo] Video-LLaMA: An Instruction-tuned Audio-Visual Language Model for Video Understanding

Instruction Tuning for Large Language Models: A Survey

Enhancing Video-Language Representations with Structural Spatio-Temporal Alignment

IEEE transactions on pattern analysis and machine intelligence

Explainable Multimodal Emotion Reasoning

VITATECS: A Diagnostic Dataset for Temporal Concept Understanding of Video-Language Models

AutoAD III: The Prequel -- Back to the Pixels

SMILE: Multimodal Dataset for Understanding Laughter in Video with Language Models

AffectGPT: Dataset and Framework for Explainable Multimodal Emotion
  Recognition


OpenL3: Open-source deep audio and image embeddings

Full-band General Audio Synthesis with Score-based Diffusion

Towards cross-modal pre-training and learning tempo-spatial characteristics for audio recognition with convolutional and recurrent neural networks

EURASIP Journal on Audio, Speech, and Music Processing

Cross-Modal Music-Video Recommendation: A Study of Design Choices

Deep Acoustic Embeddings for Identifying Parkinsonian Speech

International Journal of Advanced Computer Science and Applications

Exploring modality-agnostic representations for music classification

Audio Embeddings as Teachers for Music Classification


Ego4D: Around the World in 3,000 Hours of Egocentric Video

Continuous speech separation: dataset and analysis

AISHELL-4: An Open Source Dataset for Speech Enhancement, Separation, Recognition and Speaker Diarization in Conference Scenario

KsponSpeech: Korean Spontaneous Speech Corpus for Automatic Speech Recognition

FastCorrect 2: Fast Error Correction on Multiple Candidates for Automatic Speech Recognition

HyPoradise: An Open Baseline for Generative Speech Recognition with Large Language Models

Continuous Speech Separation with Ad Hoc Microphone Arrays

End-to-End Speech Recognition and Disfluency Removal

The EMPATHIC Project: Mid-term Achievements

PriMock57: A Dataset Of Primary Care Mock Consultations


A fast multi-threaded k-mer counter

Highly accurate long-read HiFi sequencing data for five complex genomes

Predicting the impact of non-coding variants on DNA methylation

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

High molecular weight glutenin gene diversity in Aegilops tauschii demonstrates unique origin of superior wheat quality

A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies

Estimation of genome size using k-mer frequencies from corrected long reads

The chromosome-level genome of Gypsophila paniculata reveals the molecular mechanism of floral development and ethylene insensitivity

A telomere-to-telomere reference genome provides genetic insight into the pentacyclic triterpenoid biosynthesis in Chaenomeles speciosa

Fast Approximation of Frequent k-mers and Applications to Metagenomics


Trankit is a Light-Weight Transformer-based Python Toolkit for Multilingual Natural Language Processing

Unsupervised Cross-lingual Representation Learning at Scale

AdapterFusion: Non-Destructive Task Composition for Transfer Learning

Trankit: A Light-Weight Transformer-based Toolkit for Multilingual Natural Language Processing

MultiTACRED: A Multilingual Version of the TAC Relation Extraction Dataset

Towards L2-friendly pipelines for learner corpora: A case of written production by L2-Korean learners

Workshop on Innovative Use of NLP for Building Educational Applications


ANI-1 neural net potential with python interface (ASE)

Less is more: sampling chemical space with active learning

Extending the Applicability of the ANI Deep Learning Molecular Potential to Sulfur and Halogens

Journal of chemical theory and computation

Machine learning for protein folding and dynamics

Machine learning for molecular dynamics with strongly correlated electrons

Simple and efficient algorithms for training machine learning potentials to force data


The Replica Dataset v1 as published in https://arxiv.org/abs/1906.05797 .

The Replica Dataset: A Digital Replica of Indoor Spaces

Habitat-Matterport 3D Dataset (HM3D): 1000 Large-scale 3D Environments for Embodied AI

A Survey on Human-aware Robot Navigation

Semantic Curiosity for Active Visual Learning

How NeRFs and 3D Gaussian Splatting are Reshaping SLAM: a Survey

Vision-Language Navigation: A Survey and Taxonomy

Simultaneous Localization and Mapping Related Datasets: A Comprehensive Survey

3D reconstruction using Structure for Motion

From Perfect to Noisy World Simulation: Customizable Embodied Multi-modal Perturbations for SLAM Robustness Benchmarking


open-source feature selection repository in python

Feature Selection: A Data Perspective

Few-Shot Learning-Based Human Activity Recognition

Differentiable Unsupervised Feature Selection based on a Gated Laplacian

Patterns and correlates of physical activity in adult Norwegians: a forecasted evolution up to 2025 based on machine learning approach

Block Model Guided Unsupervised Feature Selection


A 3D electromagnetic FDTD simulator written in Python with optional GPU support

Clifford Neural Layers for PDE Modeling

Simultaneous estimation of wall and object parameters in TWR using deep neural network

Through-the-Wall Radar under Electromagnetic Complex Wall: A Deep Learning Approach

NIDN: Neural Inverse Design of Nanostructures


Package for interpreting scikit-learn's decision tree and random forest predictions.

A Survey on the Explainability of Supervised Machine Learning

Journal of Artificial Intelligence Research

Toward Trustworthy AI Development: Mechanisms for Supporting Verifiable Claims

Explainable AI for Trees: From Local Explanations to Global Understanding

Machine Learning for the Zwicky Transient Facility

Publications of the Astronomical Society of the Pacific

Predicting disease-causing variant combinations

Get It Scored Using AutoSAS -- An Automated System for Scoring Short Answers

Understanding mutational effects in digenic diseases

Towards novel insights in lattice field theory with explainable machine learning

Learning from the machine: interpreting machine learning algorithms for point- and extended-source classification

Classification of non-coding variants with high pathogenic impact


MineDojo: Building Open-Ended Embodied Agents with Internet-Scale Knowledge

Large Language Models Play StarCraft II: Benchmarks and A Chain of Summarization Approach

Reinforcement Learning Friendly Vision-Language Model for Minecraft


R scripts for a GHG emissions indicator published on Environmental Reporting BC


EcoGEnIE 1.0: plankton ecology in the cGEnIE Earth system model

Early Cenozoic Decoupling of Climate and Carbonate Compensation Depth Trends

Negative carbon isotope excursions: an interpretive framework

Iron and sulfur cycling in the cGENIE.muffin Earth system model (v0.9.21)

Oceanic and atmospheric methane cycling in the cGENIE Earth system model – release v0.9.14

Resolving ecological feedbacks on the ocean carbon sink in Earth system models

Variable C∕P composition of organic production and its effect on ocean carbon storage in glacial-like model simulations

Anoxic iron and sulphur cycling in the cGENIE.muffin Earth
system model (v0.9.16)


SAGECal is a fast, memory efficient and GPU accelerated radio interferometric calibration program. It supports all source models including points, Gaussians and Shapelets. Distributed calibration using MPI and consensus optimization is enabled. Both spectral and spatial priors can be used as constraints. Tools to build/restore sky models are included.

Improved upper limits on the 21 cm signal power spectrum of neutral hydrogen at z ≈ 9.1 from LOFAR

Monthly notices of the Royal Astronomical Society

Modelling and peeling extended sources with shapelets: A Fornax A case study

Publications of the Astronomical Society of Australia

Data multiplexing in radio interferometric calibration

Adaptive ADMM in Distributed Radio Interferometric Calibration

GPU acceleration of the SAGECal calibration package for the SKA


Cavity-modulated ionization potentials and electron affinities from quantum electrodynamics coupled-cluster theory.

Enhanced Diastereocontrol via Strong Light-Matter Interactions in an Optical Cavity.

Non-Hermitian Cavity Quantum Electrodynamics - Configuration Interaction Singles Approach for Polaritonic Structure with ab initio Molecular Hamiltonians

Reduced-density-matrix-based ab initio cavity quantum electrodynamics

Assessing the Effects of Orbital Relaxation and the Coherent-State Transformation in Quantum Electrodynamics Density Functional and Coupled-Cluster Theories

Challenges for variational reduced-density-matrix theory with three-particle N-representability conditions

Single reference treatment of strongly correlated H_4 and H_10 isomers with Richardson-Gaudin states

The orientation dependence of cavity-modified chemistry


The main distribution of NuWro

Electroweak single-pion production off the nucleon: From threshold to high invariant masses

Pion production within the hybrid relativistic plane wave impulse approximation model at MiniBooNE and MINERvA kinematics

Neutrino energy reconstruction from semi-inclusive samples

Second class currents, axial mass, and nuclear effects in hyperon production

Data-based two-body current contribution to the neutrino-nucleus cross section

Monte Carlo event generation of neutrino-electron scattering

Journal of Physics G: Nuclear and Particle Physics

Modeling neutrino-nucleus interaction at intermediate energies

Proceedings of The 19th International Workshop on Neutrinos from Accelerators NUFACT2017 — PoS(NuFact2017)

Comparing generator predictions of transverse kinematic imbalance in neutrino-argon scattering


Accelerating cosmological inference with Gaussian processes and neural networks – an application to LSST Y1 weak lensing and galaxy clustering

Early dark energy constraints with late-time expansion marginalization

Interpreting Internal Consistency of DES Measurements

Investigating Late-Time Dark Energy and Massive Neutrinos in Light of
  DESI Y1 BAO


Full-Stack OpenFlow Framework in Ruby

SDN Controllers: Benchmarking & Performance Evaluation

Software-Defined Networking: A Comprehensive Survey

QoS improvement with an optimum controller selection for software-defined networks

Software-Defined Networking: Categories, Analysis, and Future Directions

A Novel Scheme for Controller Selection in Software-Defined Internet-of-Things (SD-IoT)

Elastic and Adaptive Resource Orchestration Architecture on 3-Tier Network Virtualization Model

IEICE Transactions on Information and Systems


Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

Fast and accurate de novo genome assembly from long uncorrected reads

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

Research in Computational Molecular Biology

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus

Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development

De novo genome assembly of the potent medicinal plant Rehmannia glutinosa using nanopore technology

Computational and structural biotechnology journal

Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics

Transmission of Similar Mcr-1 Carrying Plasmids among Different Escherichia coli Lineages Isolated from Livestock and the Farmer

Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)


Code for simulating skies for 21cm Intensity Mapping, including galactic and extragalactic foregrounds.

21 cm Signal Recovery via Robust Principal Component Analysis

Ionospheric Attenuation of Polarized Foregrounds in 21 cm Epoch of Reionization Measurements: A Demonstration for the HERA Experiment

Packed Ultra-wideband Mapping Array (PUMA): Astro2020 RFI Response

Antisymmetric Cross-correlation between H i and CO Line Intensity Maps as a New Probe of Cosmic Reionization

A Simulation of Calibration and Map-making Errors of the Tianlai Cylinder Pathfinder Array

A Semiblind PCA-based Foreground Subtraction Method for 21 cm Intensity Mapping

Application of Regularization Methods in the Sky Map Reconstruction of the Tianlai Cylinder Pathfinder Array


3D/4D volumetric rendering of microscopy data

Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy

Nested neural circuits generate distinct acoustic signals during Drosophila courtship

A modular circuit architecture coordinates the diversification of courtship strategies in Drosophila.

bioRxiv : the preprint server for biology

New genetic tools for mushroom body output neurons in Drosophila


Python translation of MOSART-WM: a water routing and management model


Quantifying the local tissue volume and composition in individual brains with magnetic resonance imaging

qMRLab: Quantitative MRI analysis, under one umbrella

Cortical recycling in high-level visual cortex during childhood development

White matter myelination during early infancy is linked to spatial gradients and myelin content at birth

Microstructural properties of the vertical occipital fasciculus explain the variability in human stereoacuity

Microstructural plasticity in the bilingual brain

Diffusivity and quantitative T1 profile of human visual white matter tracts after retinal ganglion cell damage

White matter fascicles and cortical microstructure predict reading-related responses in human ventral temporal cortex

Infants’ cortex undergoes microstructural growth coupled with myelination during development

Microstructural deficits of the thalamus in major depressive disorder


A set of Python tools for statistically analyzing data. This includes aspects of lattice QCD applications related to QCD phenomenology.

Equation of state and speed of sound of (2+1)-flavor QCD in strangeness-neutral matter at non-vanishing net baryon-number density

Streamlined data analysis in Python

The isentropic equation of state of (2+1)-flavor QCD: An update based on high precision Taylor expansion and Pade-resummed expansion at finite chemical potentials

Isothermal and isentropic speed of sound in (2+1)-flavor QCD at non-zero baryon chemical potential


spatially-resolved ESM-specific multi-scenario initial-condition ensemble emulator

From emission scenarios to spatially resolved projections with a chain of computationally efficient emulators: coupling of MAGICC (v7.5.1) and MESMER (v0.8.3)


A collection of datasets that pair questions with SQL queries.

Improving Text-to-SQL Evaluation Methodology

PROCEEDINGS OF THE 56TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL), VOL 1

Natural Language Processing Advancements By Deep Learning: A Survey

Leveraging Code to Improve In-context Learning for Semantic Parsing

Recent Advances in SQL Query Generation: A Survey

Revisit Systematic Generalization via Meaningful Learning


A framework for the elicitation, specification, formalization and understanding of requirements.

Formal Requirements Elicitation with FRET

Requirements Engineering: Foundation for Software Quality

From Requirements to Autonomous Flight: An Overview of the Monitoring ICAROUS Project

A Compositional Proof Framework for FRETish Requirements


A parser to read .imzML files with python

Cancer Tissue Classification Using Supervised Machine Learning Applied to MALDI Mass Spectrometry Imaging

Sample preparation strategy for the detection of steroid-like compounds using MALDI mass spectrometry imaging: pulmonary distribution of budesonide as a case study

High-throughput deconvolution of native protein mass spectrometry imaging datasets for mass domain analysis.


Collection template and associated materials for SARS-CoV-2 metadata

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training


chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

Molecular characterization of organoids derived from pancreatic intraductal papillary mucinous neoplasms

chimeraviz: a tool for visualizing chimeric RNA

Immuno-genomic classification of colorectal cancer organoids reveals cancer cells with intrinsic immunogenic properties associated with patient survival

Journal of experimental & clinical cancer research : CR

Clinker: visualizing fusion genes detected in RNA-seq data

RNA-sequencing of IDH-wild-type glioblastoma with chromothripsis identifies novel gene fusions with potential oncogenic properties

Detailed Molecular and Immune Marker Profiling of Archival Prostate Cancer Samples Reveals an Inverse Association between TMPRSS2:ERG Fusion Status and Immune Cell Infiltration

The Journal of molecular diagnostics : JMD

FuSpot: a web-based tool for visual evaluation of fusion candidates


High Quality Geophysical Analysis provides a general purpose Bayesian and deterministic inversion framework for various geophysical methods and spatially distributed / timeseries data

Bayesian inversion of marine CSEM data with a trans-dimensional self parametrizing algorithm

Trans-dimensional Bayesian inversion of airborne transient EM data from Taylor Glacier, Antarctica

Bayesian geophysical inversion with trans-dimensional Gaussian process machine learning

Bayesian inversion using nested trans-dimensional Gaussian processes


A proxy app for the Monte Carlo Transport Code, Mercury.  LLNL-CODE-684037

GPA: A GPU Performance Advisor Based on Instruction Sampling

Measurement and analysis of GPU-accelerated applications with HPCToolkit

Evaluation of Single-Node Performance of Parallel Algorithms for Multigroup Monte Carlo Particle Transport Methods

Power Constrained Autotuning using Graph Neural Networks


This repository is no longer maintained.

End-to-end Audio-visual Speech Recognition with Conformers

What makes a popular academic AI repository?

Zenodo (CERN European Organization for Nuclear Research)

Automatic Analysis of Available Source Code of Top Artificial Intelligence Conference Papers

International journal of software engineering and knowledge engineering

An Explorative Study of GitHub Repositories of AI Papers


Creative Commons Attribution 4.0 International

Data, in citable form, produced by the Coudert research group

Heterometallic Metal–Organic Frameworks of MOF-5 and UiO-66 Families: Insight from Computational Chemistry

On the use of the IAST method for gas separation studies in porous materials with gate-opening behavior

Isolating the Role of the Node-Linker Bond in the Compression of UiO-66 Metal-Organic Frameworks

Emergence of Coupled Rotor Dynamics in Metal–Organic Frameworks via Tuned Steric Interactions

Journal of the American Chemical Society

Chiral Lanthanum Metal-Organic Framework with Gated CO2 Sorption and Concerted Framework Flexibility

van der Waals forces stabilize low-energy polymorphism in B2O3: Implications for the crystallization anomaly

Conformational chiral polymorphism in cis-bis-triphenylphosphine complexes of transition metals


EnergyPATHWAYS model is a professional, open-source energy and carbon planning tool for use in evaluating long-term, economy-wide greenhouse gas mitigation scenarios.


Bridging the gap between observation and theory

Hoki: Making BPASS accessible through Python

The DUVET Survey: Direct T  e -based Metallicity Mapping of Metal-enriched Outflows and Metal-poor Inflows in Markarian 1486

Progenitor, environment, and modelling of the interacting transient AT 2016jbu (Gaia16cfr)

A systematic aging method I: HII regions D118 and D119 in NGC 300

Monthly Notices of the Royal Astronomical Society

End-to-end study of the host galaxy and genealogy of the first binary neutron star merger


Awesome Domain Adaptation Python Toolbox

Unsupervised Domain Adaptation by Backpropagation

Adversarial Discriminative Domain Adaptation

Learning and Transferring Mid-Level Image Representations using Convolutional Neural Networks

HAL (Le Centre pour la Communication Scientifique Directe)

Deep CORAL: Correlation Alignment for Deep Domain Adaptation

Conditional Adversarial Domain Adaptation

Maximum Classifier Discrepancy for Unsupervised Domain Adaptation

Wasserstein Distance Guided Representation Learning for Domain Adaptation

Unified Deep Supervised Domain Adaptation and Generalization

Bridging Theory and Algorithm for Domain Adaptation

Correlation Alignment for Unsupervised Domain Adaptation


Elegant and Easy Tweet Preprocessing in Python

BUT-FIT at SemEval-2019 Task 7: Determining the Rumour Stance with Pre-Trained Deep Bidirectional Transformers

Analysing user identity via time-sensitive semantic edit distance (t-SED): a case study of Russian trolls on Twitter

Leveraging Multilingual Transformers for Hate Speech Detection

Implicit Sentiment Analysis with Event-centered Text Representation

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing

Fine-Tune Longformer for Jointly Predicting Rumor Stance and Veracity

Proceedings of the 3rd ACM India Joint International Conference on Data Science & Management of Data (8th ACM IKDD CODS & 26th COMAD)

One to rule them all: Towards Joint Indic Language Hate Speech Detection

Task Adaptive Pretraining of Transformers for Hostility Detection

Fluctuations of psychological states on Twitter before and during COVID-19

HATEMINER at SemEval-2019 Task 5: Hate speech detection against Immigrants and Women in Twitter using a Multinomial Naive Bayes Classifier

North American Chapter of the Association for Computational Linguistics

BOUN-TABI@SMM4H’22: Text-to-Text Adverse Drug Event Extraction with Data Balancing and Prompting


Space-efficient pseudoalignment with a colored de Bruijn graph

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

Bacterial genomic epidemiology with mixed samples

Genomic Epidemiology with Mixed Samples


A Python Spectral Typing Suite

An Empirical Template Library of Stellar Spectra for a Wide Range of Spectral Classes, Luminosity Classes, and Metallicities Using SDSS BOSS Spectra

The Astrophysical Journal Supplement Series

Classifying Single Stars and Spectroscopic Binaries Using Optical Stellar Templates

TOI-2257 b: A highly eccentric long-period sub-Neptune transiting a nearby M dwarf

An Optical and X-Ray Study of the Contact Binary, BH Cassiopeiae

Publications of the Astronomical Society of the Pacific

Stars and brown dwarfs in the σ Orionis cluster

Collisions of Terrestrial Worlds: The Occurrence of Extreme Mid-infrared Excesses around Low-mass Field Stars

Serendipitous discovery of radio flaring behaviour from a nearby M dwarf with MeerKAT

Monthly notices of the Royal Astronomical Society

A Long-period Pre-ELM System Discovered from the LAMOST Medium-resolution Survey

A correction method for the telluric absorptions and application to Lijiang Observatory


R package for bcbio RNA-seq analysis.

ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair

bcbioRNASeq: R package for bcbio RNA-seq analysis

TET2lesions enhance the aggressiveness ofCEBPA-mutant AML by rebalancingGATA2expression

TOmicsVis: An all‐in‐one transcriptomic analysis and visualization R package with Shinyapp interface


Bioinformatics tool to find integrons in bacterial genomes

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Whole-genome analysis of carbapenem-resistant Acinetobacter baumannii from clinical isolates in Southern Thailand

Prevalence and Population Diversity of Listeria monocytogenes Isolated from Dairy Cattle Farms in the Cantabria Region of Spain

Animals : an open access journal from MDPI

Coexistence of blaNDM-1 and blaIMP-4 in One Novel Hybrid Plasmid Confers Transferable Carbapenem Resistance in an ST20-K28 Klebsiella pneumoniae

Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the P. syringae species complex

First Report of Colistin-Resistant Escherichia coli Carrying mcr-1 IncI2(delta) and IncX4 Plasmids from Camels (Camelus dromedarius) in the Gulf Region


Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

NGL viewer: web-based molecular graphics for large complexes

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Binder 2.0 - Reproducible, interactive, sharable environments for science at scale

Proceedings of the Python in Science Conferences

3Dmol.js: molecular visualization with WebGL

Web-based molecular graphics for large complexes

Proceedings of the 21st International Conference on Web3D Technology

MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures

Towards an efficient compression of 3D coordinates of macromolecular structures


Matlab toolbox for classification and regression of multi-dimensional data

Characterizing the dynamics of mental representations: the temporal generalization method

MVPA-Light: A Classification and Regression Toolbox for Multi-Dimensional Data

The LDA beamformer: Optimal estimation of ERP source time series using linear discriminant analysis

Human stereoEEG recordings reveal network dynamics of decision-making in a rule-switching task

Auditory cortical alpha/beta desynchronization prioritizes the representation of memory items during a retention period

Targeted memory reactivation in human REM sleep elicits detectable reactivation

Temporal prediction elicits rhythmic preactivation of relevant sensory cortices

Protocol to decode representations from EEG data with intermixed signals using temporal signal decomposition and multivariate pattern-analysis

Auditory cortical alpha desynchronization prioritizes the representation of memory items during a retention period

Cross-validation in high-dimensional spaces: a lifeline for least-squares models and multi-class LDA


CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Spatial multiomics map of trophoblast development in early pregnancy

Spatially resolved multiomics of human cardiac niches

Mapping and Validation of scRNA-Seq-Derived Cell-Cell Communication Networks in the Tumor Microenvironment

Single-cell RNA sequencing depicts the local cell landscape in thyroid-associated ophthalmopathy

NADase CD38 is a key determinant of ovarian aging

CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics data

A spatiotemporal gene expression and cell atlases of the developing rat ovary


Approximate Model Counter

Belief Propagation Neural Networks

Sparse Hashing for Scalable Approximate Model Counting: Theory and Practice

Rounding Meets Approximate Model Counting

Model Counting and Uniform Sampling Instances

Locally-Minimal Probabilistic Explanations


A simple method to perform semi-supervised learning with limited data.

FixMatch: Simplifying Semi-Supervised Learning with Consistency and Confidence

Dash: Semi-Supervised Learning with Dynamic Thresholding

Exponential Moving Average Normalization for Self-supervised and Semi-supervised Learning

Not All Unlabeled Data are Equal: Learning to Weight Data in Semi-supervised Learning

AlphaMatch: Improving Consistency for Semi-supervised Learning with Alpha-divergence

Enhancing MR Image Segmentation with Realistic Adversarial Data Augmentation

Distribution-Aware Semantics-Oriented Pseudo-label for Imbalanced Semi-Supervised Learning.

Credal Self-Supervised Learning

Building One-Shot Semi-supervised (BOSS) Learning up to Fully Supervised Performance

Fix-A-Step: Semi-supervised Learning from Uncurated Unlabeled Data


An R interface to enrichR

Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development

Molecular basis of crosstalk in nuclear receptors: heterodimerization between PXR and CAR and the implication in gene regulation

ATR inhibition induces synthetic lethality in mismatch repair-deficient cells and augments immunotherapy


Repository with code for MaChAmp: https://aclanthology.org/2021.eacl-demos.22/

Massive Choice, Ample Tasks (MaChAmp): A Toolkit for Multi-task Learning in NLP

Experimental Standards for Deep Learning in Natural Language Processing Research

EventNet-ITA: Italian Frame Parsing for Events


MultiZone® Security TEE is the quick and safe way to add security and separation to any RISC-V processors. The RISC-V standard ISA doesn't define TrustZone-like primitives to provide hardware separation. To shield critical functionality from untrusted third-party components, MultiZone provides hardware-enforced, software-defined separation of multi


PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Leveraging fine-mapping and multipopulation training data to improve cross-population polygenic risk scores

Fine-mapping of Parkinson’s disease susceptibility loci identifies putative causal variants

Leveraging functional genomic annotations and genome coverage to improve polygenic prediction of complex traits within and between ancestries

3D genome organization links non-coding disease-associated variants to genes

Frontiers in cell and developmental biology

Genome-wide association study of thyroid-stimulating hormone highlights new genes, pathways and associations with thyroid disease


Representation learning on large graphs using stochastic graph convolutions.

Inductive Representation Learning on Large Graphs

DeepWalk: Online Learning of Social Representations

PROCEEDINGS OF THE 20TH ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING (KDD'14)

A Comprehensive Survey on Graph Neural Networks

IEEE transactions on neural networks and learning systems

Graph Neural Networks: A Review of Methods and Applications

Deep Learning on Graphs: A Survey

FastGCN: Fast Learning with Graph Convolutional Networks via Importance Sampling

Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks

GraphSAINT: Graph Sampling Based Inductive Learning Method

Inductive Representation Learning on Temporal Graphs

Graph Self-Supervised Learning: A Survey


A framework for the real-time network traffic analysis based on world-leading technologies for distributed stream processing, network traffic monitoring, and visualization.

A performance benchmark for NetFlow data analysis on distributed stream processing systems

Network Operations and Management Symposium

Toward Stream-Based IP Flow Analysis

Real-time analysis of NetFlow data for generating network traffic statistics using Apache Spark

A Blockchained AutoML Network Traffic Analyzer to Industrial Cyber Defense and Protection


ALiPy: Active Learning in Python is an active learning python toolbox, which allows users to conveniently evaluate, compare and analyze the performance of active learning methods.

ALiPy: Active Learning in Python

Multi-View Active Learning for Short Text Classification in User-Generated Data

Re-Benchmarking Pool-Based Active Learning for Binary Classification

Pareto Optimization for Active Learning under Out-of-Distribution Data Scenarios

Active Learning Framework to Automate NetworkTraffic Classification


Plug and Play Language Model implementation. Allows to steer topic and attributes of GPT-2 models.

Plug and Play Language Models: A Simple Approach to Controlled Text Generation

Authorship Attribution for Neural Text Generation

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)

With Little Power Comes Great Responsibility

A Distributional Approach to Controlled Text Generation

TURINGBENCH: A Benchmark Environment for Turing Test in the Age of Neural Text Generation

Mix and Match: Learning-free Controllable Text Generationusing Energy Language Models

Detecting computer-generated disinformation

International Journal of Data Science and Analytics

Fine-Grained Controllable Text Generation Using Non-Residual Prompting

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Ask what's missing and what's useful: Improving Clarification Question Generation using Global Knowledge

Tailor: A Prompt-Based Approach to Attribute-Based Controlled Text Generation


Image Restoration Toolbox (PyTorch). Training and testing codes for DPIR, USRNet, DnCNN, FFDNet, SRMD, DPSR, BSRGAN, SwinIR

AIM 2020 Challenge on Efficient Super-Resolution: Methods and Results

Plug-and-Play Algorithms for Video Snapshot Compressive Imaging

DOLCE: A Model-Based Probabilistic Diffusion Framework for Limited-Angle CT Reconstruction

URNet: A U-Shaped Residual Network for Lightweight Image Super-Resolution

Multi-Resolution Data Fusion for Super Resolution Imaging

Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy

Total Variation Optimization Layers for Computer Vision

A Deep Learning Scheme for Efficient Multimedia IoT Data Compression

NF-ULA: Normalizing Flow-Based Unadjusted Langevin Algorithm for Imaging Inverse Problems

The ADMM-PINNs Algorithmic Framework for Nonsmooth PDE-Constrained Optimization: A Deep Learning Approach


Resources for the "SummEval: Re-evaluating Summarization Evaluation" paper

Factual Consistency Evaluation for Text Summarization via Counterfactual Estimation

Bidimensional Leaderboards: Generate and Evaluate Language Hand in Hand

How Ready are Pre-trained Abstractive Models and LLMs for Legal Case Judgement Summarization?

Human Evaluation and Correlation with Automatic Metrics in Consultation Note Generation

Of Human Criteria and Automatic Metrics: A Benchmark of the Evaluation of Story Generation

Don't Say What You Don't Know: Improving the Consistency of Abstractive Summarization by Constraining Beam Search

Multi-Dimensional Evaluation of Text Summarization with In-Context Learning

Investigating Entropy for Extractive Document Summarization

ALLURE: Auditing and Improving LLM-based Evaluation of Text using Iterative In-Context-Learning


Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

Chromatin accessibility is a two-tier process regulated by transcription factor pioneering and enhancer activation

Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements


Global Biotic Interactions provides access to existing species interaction datasets

Global Biotic Interactions: Taxon Graph

Zenodo (CERN European Organization for Nuclear Research)


Open source FPGA-based NIC and platform for in-network compute

SimBricks

SIGCOMM '22: PROCEEDINGS OF THE 2022 ACM SIGCOMM 2022 CONFERENCE

Enabling End-to-End Simulation for Host Networking Evaluation using SimBricks


TextAugment: Text Augmentation Library

EDA: Easy Data Augmentation Techniques for Boosting Performance on Text Classification Tasks

Augmenting Data with Mixup for Sentence Classification: An Empirical Study

Improving short text classification through global augmentation methods

Is it Fake? News Disinformation Detection on South African News Websites

HULAT at SemEval-2023 Task 9: Data augmentation for pre-trained transformers applied to Multilingual Tweet Intimacy Analysis


Deep Learning Toolkit for Medical Image Analysis

An overview of deep learning in medical imaging focusing on MRI

HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation

Prior-aware Neural Network for Partially-Supervised Multi-Organ Segmentation

DLTK: State of the Art Reference Implementations for Deep Learning on Medical Images

Multi-Scale Attentional Network for Multi-Focal Segmentation of Active Bleed after Pelvic Fractures

The use of deep learning in medical imaging to improve spine care: A scoping review of current literature and clinical applications


I decide to sync up this repo and self-critical.pytorch. (The old master is in old master branch for archive)

Bottom-Up and Top-Down Attention for Image Captioning and Visual Question Answering

Self-critical Sequence Training for Image Captioning

Few-Shot Bot: Prompt-Based Learning for Dialogue Systems

Twin Networks: Matching the Future for Sequence Generation

Generating Diverse and Meaningful Captions

Rethinking Surgical Captioning: End-to-End Window-Based MLP Transformer Using Patches

Retrieval, Analogy, and Composition: A framework for Compositional Generalization in Image Captioning

Findings of the Association for Computational Linguistics: EMNLP 2021

Neural Image Captioning


Flood Python Toolbox

FLOMPY: An Open-Source Toolbox for Floodwater Mapping Using Sentinel-1 Intensity Time Series


Official code for BEVDepth.

BEVDepth: Acquisition of Reliable Depth for Multi-view 3D Object Detection

BEVStereo: Enhancing Depth Estimation in Multi-view 3D Object Detection with Dynamic Temporal Stereo

CRN: Camera Radar Net for Accurate, Robust, Efficient 3D Perception

MatrixVT: Efficient Multi-Camera to BEV Transformation for 3D Perception

aiMotive Dataset: A Multimodal Dataset for Robust Autonomous Driving with Long-Range Perception


JavaScript source code visualization, static analysis, and complexity tool

End-to-End Analysis of In-Browser Cryptojacking

Analyzing In-browser Cryptojacking


FedNLP: An Industry and Research Integrated Platform for Federated Learning in Natural Language Processing, Backed by FedML, Inc. The Previous Research Version is Accepted to NAACL 2022

FedNLP: Benchmarking Federated Learning Methods for Natural Language Processing Tasks

Federated Learning Meets Natural Language Processing: A Survey

Can Foundation Models Help Us Achieve Perfect Secrecy?

Federated Model Decomposition with Private Vocabulary for Text Classification

Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing


Is-Vegan helps you to find out which food ingredients are vegan / non-vegan


The project is an official implementation of our CVPR2019 paper "Deep High-Resolution Representation Learning for Human Pose Estimation"

Deep High-Resolution Representation Learning for Visual Recognition

High-Resolution Representations for Labeling Pixels and Regions

Distribution-Aware Coordinate Representation for Human Pose Estimation

The Devil is in the Details: Delving into Unbiased Data Processing for Human Pose Estimation

Whole-Body Human Pose Estimation in the Wild

A Survey of Deep Learning for Scientific Discovery

When Human Pose Estimation Meets Robustness: Adversarial Algorithms and Benchmarks

Simple and Lightweight Human Pose Estimation

COMPOSER: Compositional Reasoning of Group Activity in Videos with Keypoint-Only Modality


SeDuMi: A linear/quadratic/semidefinite solver for Matlab and Octave

AC Power Flow Data in MATPOWER and QCQP Format: iTesla, RTE Snapshots, and PEGASE

Scheduling IoT Applications in Edge and Fog Computing Environments: A Taxonomy and Future Directions

Spectrahedral Containment and Operator Systems with Finite-Dimensional Realization

SIAM Journal on applied algebra and geometry

Type-Independent Characterization of Spacelike Separated Resources.

Relative Transformation Estimation Based on Fusion of Odometry and UWB Ranging Data

Semi-definite programming and quantum information

On the general constraints in single qubit quantum process tomography

Measures and LMIs for Adaptive Control Validation

Measures and LMIs for Lateral F-16 MRAC Validation

Semidefinite programming relaxations for quantum correlations


A Large-scale Chinese Short-Text Conversation Dataset and Chinese pre-training dialog models

The Curious Case of Neural Text Degeneration

Neural Responding Machine for Short-Text Conversation

TransferTransfo: A Transfer Learning Approach for Neural Network Based Conversational Agents

A Large-Scale Chinese Short-Text Conversation Dataset

Towards an Online Empathetic Chatbot with Emotion Causes

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

CPED: A Large-Scale Chinese Personalized and Emotional Dialogue Dataset for Conversational AI

Retrieve, Discriminate and Rewrite: A Simple and Effective Framework for Obtaining Affective Response in Retrieval-Based Chatbots

Prediction, Selection, and Generation: Exploration of Knowledge-Driven Conversation System

RealMedDial: A Real Telemedical Dialogue Dataset Collected from Online Chinese Short-Video Clips

International Conference on Computational Linguistics


R package implementing analysis tools for lattice QCD

Scattering of two and three physical pions at maximal isospin from lattice QCD

Hadron–Hadron interactions from
    N_f=2+1+1
Nf=2+1+1 lattice QCD: the
    ρ
ρ-resonance

Relativistic N-particle energy shift in finite volume

The ρ-resonance with physical pion mass from N_f=2 lattice QCD

Digitising SU(2) gauge fields and the freezing transition

Three-body resonances in the φ^4 theory

Elastic π − N scattering in the I = 3/2 channel

Hamiltonian limit of lattice QED in 2+1 dimensions


Goodman Data Reduction Pipeline

The Diverse Properties of Type Icn Supernovae Point to Multiple Progenitor Channels

Discovery of 74 new bright ZZ Ceti stars in the first three years of TESS

Confirming new changing-look AGNs discovered through optical variability using a random forest-based light-curve classifier

Monthly Notices of the Royal Astronomical Society: Letters

Activity and Rotation of Nearby Field M Dwarfs in the TESS Southern Continuous Viewing Zone

The bright blue side of the night sky: Spectroscopic survey of bright and hot (pre-) white dwarfs

Pulsating hydrogen-deficient white dwarfs and pre-white dwarfs observed
  with TESS -- IV. Discovery of two new GW Vir stars: TIC0403800675 and
  TIC1989122424


Open Plant Pathology website


RPD Pipelines

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Dynamic phenotypic heterogeneity and the evolution of multiple RNA subtypes in hepatocellular carcinoma: the PLANET study

Integrative Profiling of T790M-Negative EGFR-Mutated NSCLC Reveals Pervasive Lineage Transition and Therapeutic Opportunities

Clinical cancer research : an official journal of the American Association for Cancer Research


RLDS: an Ecosystem to Generate, Share and Use Datasets in Reinforcement Learning


Basic minc-tools from former minc repository

[18F]FDG PET signal is driven by astroglial glutamate transport

Cerebral atrophy in amyotrophic lateral sclerosis parallels the pathological distribution of TDP43

Habenular Involvement in Response to Subcallosal Cingulate Deep Brain Stimulation for Depression

Super-resolution QSM in little or no additional time for imaging (NATIve) using 2D EPI imaging in 3 orthogonal planes


VirtualFCS is a Modelica library for hybrid hydrogen fuel cell and battery power systems.


Large scale K-means and K-nn implementation on NVIDIA GPU / CUDA

Cluster-Former: Clustering-based Sparse Transformer for Long-Range Dependency Encoding

Context Mover's Distance & Barycenters: Optimal transport of contexts for building representations

Deep Kernel Learning for Clustering

Zoom: SSD-based Vector Search for Optimizing Accuracy, Latency and Memory

Modeling Dynamics of Facial Behavior for Mental Health Assessment

Correlating Twitter Language with Community-Level Health Outcomes

A Generic Distributed Clustering Framework for Massive Data


The Global Virome in One Network

The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations

Mammal virus diversity estimates are unstable due to accelerating discovery effort

Viral genomic features predict orthopoxvirus reservoir hosts

bioRxiv : the preprint server for biology


Tools to analyze and manipulate climate (spatiotemporal) data. Also used by ClimateTools and ClimatePlots


Multi-Objective Reinforcement Learning algorithms implementations.

A Generalized Algorithm for Multi-Objective Reinforcement Learning and Policy Adaptation

Multi-Objective Deep Reinforcement Learning

Sample-Efficient Multi-Objective Learning via Generalized Policy Improvement Prioritization

A Toolkit for Reliable Benchmarking and Research in Multi-Objective Reinforcement Learning

Pareto Conditioned Networks

Multi-Objective Reinforcement Learning Based on Decomposition: A Taxonomy and Framework

Hyperparameter Optimization for Multi-Objective Reinforcement Learning


Machine Learning Interatomic Potentials with the Atomic Cluster Expansion

ACEpotentials.jl: A Julia Implementation of the Atomic Cluster Expansion

A Theoretical Case Study of the Generalisation of Machine-learned Potentials

Benchmarking of machine learning interatomic potentials for reactive
  hydrogen dynamics at metal surfaces

Atomic Cluster Expansion without Self-Interaction

Surrogate Models for Vibrational Entropy Based on a Spatial
  Decomposition


SPlisHSPlasH is an open-source library for the physically-based simulation of fluids.

Lagrangian Neural Style Transfer for Fluids

Numerical Study on the Hydrodynamic Characteristics of a Double-Row Floating Breakwater Composed of a Pontoon and an Airbag

Journal of Marine Science and Engineering

A Contact Proxy Splitting Method for Lagrangian Solid-Fluid Coupling

Accelerating Surface Tension Calculation in SPH via Particle Classification & Monte Carlo Integration

A Variational Staggered Particle Framework for Incompressible Free-Surface Flows


research work on multimodal cognitive ai

LLaVA-Gemma: Accelerating Multimodal Foundation Models with a Compact
  Language Model

NeuroComparatives: Neuro-Symbolic Distillation of Comparative Knowledge

SocialCounterfactuals: Probing and Mitigating Intersectional Social Biases in Vision-Language Models with Counterfactual Examples

NeuroPrompts: An Adaptive Framework to Optimize Prompts for Text-to-Image Generation

ICSVR: Investigating Compositional and Syntactic Understanding in Video Retrieval Models


Draw UpSet plots with Matplotlib

Nanopore direct RNA sequencing maps an Arabidopsis N6 methyladenosine epitranscriptome

Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies

Isolation and Identification of Staphylococcus Species Obtained from Healthy Companion Animals and Humans

Antimicrobial Resistance and Extended-Spectrum Beta-Lactamase Genes in Enterobacterales, Pseudomonas and Acinetobacter Isolates from the Uterus of Healthy Mares


Automated Fiber Quantification

DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning

A browser-based tool for visualization and analysis of diffusion MRI data

White matter myelination during early infancy is linked to spatial gradients and myelin content at birth

Microstructural properties of the vertical occipital fasciculus explain the variability in human stereoacuity

Applying microstructural models to understand the role of white matter in cognitive development

Computational neuroanatomy of human stratum proprium of interparietal sulcus

Longitudinal white matter microstructural changes in pediatric mild traumatic brain injury: An A‐CAP study

Post-acute white matter microstructure predicts post-acute and chronic post-concussive symptom severity following mild traumatic brain injury in children

Aberrant White Matter Microstructure as a Potential Diagnostic Marker in Alzheimer's Disease by Automated Fiber Quantification

Neonatal white matter tract microstructure and 2-year language outcomes after preterm birth


A single-cell survey of Drosophila blood

Fast and precise single-cell data analysis using a hierarchical autoencoder

Human ALS/FTD brain organoid slice cultures display distinct early astrocyte and targetable neuronal pathology

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

Single-cell profiling reveals pathogenic role and differentiation trajectory of granzyme K+CD8+ T cells in primary Sjögren’s syndrome

Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer

Fast and precise single-cell data analysis using hierarchical autoencoder

Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages

Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis

Multi-regional characterisation of renal cell carcinoma and microenvironment at single cell resolution


Pytorch implementation of FlowNet by Dosovitskiy et al.

FlowNet: Learning Optical Flow with Convolutional Networks

Finding Correspondences for Optical Flow and Disparity Estimations using a Sub-pixel Convolution-based Encoder-Decoder Network

The Devil in the Details: Simple and Effective Optical Flow Synthetic Data Generation


(ෆ`꒳´ෆ) A Survey on Text-to-Image Generation/Synthesis.

To Create What You Tell: Generating Videos from Captions

A Survey and Taxonomy of Adversarial Neural Networks for Text-to-Image Synthesis

CPGAN: Full-Spectrum Content-Parsing Generative Adversarial Networks for Text-to-Image Synthesis

Unifying Multimodal Transformer for Bi-directional Image and Text Generation

PROCEEDINGS OF THE 29TH ACM INTERNATIONAL CONFERENCE ON MULTIMEDIA, MM 2021

Cycle-Consistent Inverse GAN for Text-to-Image Synthesis

Multi-caption Text-to-Face Synthesis: Dataset and Algorithm

Proceedings of the 29th ACM International Conference on Multimedia

Text-to-image Synthesis via Symmetrical Distillation Networks

End-to-End Text-to-Image Synthesis with Spatial Constrains

ACM Transactions on Intelligent Systems and Technology

R-GAN: Exploring Human-like Way for Reasonable Text-to-Image Synthesis via Generative Adversarial Networks

Generative Adversarial Network for Text-to-Face Synthesis and Manipulation


Inference code for CodeLlama models

Code Llama: Open Foundation Models for Code

Difference-in-Differences Estimation with Spatial Spillovers

A Survey on Large Language Models for Software Engineering

LLM for SoC Security: A Paradigm Shift

An HCI-Centric Survey and Taxonomy of Human-Generative-AI Interactions

Natural Language Embedded Programs for Hybrid Language Symbolic Reasoning

LLM4VV: Developing LLM-Driven Testsuite for Compiler Validation

The Transformative Influence of Large Language Models on Software Development

Chain-of-Thought in Neural Code Generation: From and For Lightweight Language Models


mbedtls-SGX: a SGX-friendly TLS stack (ported from mbedtls)

STACCO: Differentially Analyzing Side-Channel Traces for Detecting SSL/TLS Vulnerabilities in Secure Enclaves

Conference on Computer and Communications Security

Reaching Data Confidentiality and Model Accountability on the CalTrain

Towards Efficiently Establishing Mutual Distrust Between Host Application and Enclave for SGX

Speedster: A TEE-assisted State Channel System

Distributed systems and trusted execution environments: Trade-offs and challenges

Anais Estendidos do Simpósio Brasileiro de Redes de Computadores e Sistemas Distribuídos (SBRC Estendido 2020)


:smile_cat: :speech_balloon: A module to compute textual lexical richness (aka lexical diversity).

How to Split: the Effect of Word Segmentation on Gender Bias in Speech Translation

Task2Dial: A Novel Task and Dataset for Commonsense-enhanced Task-based Dialogue Grounded in Documents

LLM See, LLM Do: Guiding Data Generation to Target Non-Differentiable Objectives

ChatGPT as a Commenter to the News: Can LLMs Generate Human-Like Opinions?

Multidisciplinary International Symposium on Disinformation in Open Online Media

GiCCS: A German in-Context Conversational Similarity Benchmark

Zenodo (CERN European Organization for Nuclear Research)


Demos and tutorials around Torch7.

Regularizing CNNs with Locally Constrained Decorrelations

A Deep Convolutional Auto-Encoder with Pooling - Unpooling Layers in Caffe

Unbounded Bayesian Optimization via Regularization

Creation of a Deep Convolutional Auto-Encoder in Caffe


Evaluate your speech-to-text system with similarity measures such as word error rate (WER)

StoRM: A Diffusion-Based Stochastic Regeneration Model for Speech Enhancement and Dereverberation

Applying speech technologies to assess verbal memory in patients with serious mental illness

A Time-Frequency Attention Module for Neural Speech Enhancement

IEEE/ACM Transactions on Audio, Speech, and Language Processing

TabLeX: A Benchmark Dataset for Structure and Content Information Extraction from Scientific Tables

Exploiting Biased Models to De-bias Text: A Gender-Fair Rewriting Model

SubER: A Metric for Automatic Evaluation of Subtitle Quality

Can Visual Context Improve Automatic Speech Recognition for an Embodied Agent?

Thai Wav2Vec2.0 with CommonVoice V8

Using automated syllable counting to detect missing information in speech transcripts from clinical settings

No Pitch Left Behind: Addressing Gender Unbalance in Automatic Speech Recognition through Pitch Manipulation


A neuroscience library for Python, intended to complement the existing nibabel library.

Bayesian analysis of retinotopic maps

Linking individual differences in human primary visual cortex to contrast sensitivity around the visual field

Cross-dataset reproducibility of human retinotopic maps

Variability of the Surface Area of the V1, V2, and V3 Maps in a Large Sample of Human Observers

Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 T

White matter alterations in glaucoma and monocular blindness differ outside the visual system

Structural changes to primary visual cortex in the congenital absence of cone input in achromatopsia

Reproducible protocol to obtain and measure first-order relay human thalamic white-matter tracts

The many layers of BOLD. The effect of hypercapnic and hyperoxic stimuli on macro- and micro-vascular compartments quantified by CVR, M, and CBV across cortical depth

Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

A population receptive field model of the magnetoencephalography response


Cingulata (pronounced "tchingulata") is a compiler toolchain and RTE for running C++ programs over encrypted data by means of fully homomorphic encryption techniques.

Homomorphic Encryption for Machine Learning in Medicine and Bioinformatics

EVA: an encrypted vector arithmetic language and compiler for efficient homomorphic computation

Programming Language Design and Implementation

CPU and GPU Accelerated Fully Homomorphic Encryption

KONFIDO: An OpenNCP-Based Secure eHealth Data Exchange System

SECURITY IN COMPUTER AND INFORMATION SCIENCES, EURO-CYBERSEC 2018

CHET: Compiler and Runtime for Homomorphic Evaluation of Tensor Programs


Tools for manipulating biological data, particularly multiple sequence alignments

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation

Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Methylartist: tools for visualizing modified bases from nanopore sequence data

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex


Python API for LVIS Dataset

LVIS: A Dataset for Large Vocabulary Instance Segmentation

Overcoming Classifier Imbalance for Long-tail Object Detection with Balanced Group Softmax

Adaptive Class Suppression Loss for Long-Tail Object Detection


A deep learning-based tool to identify splice variants

Predicting Splicing from Primary Sequence with Deep Learning

CADD-Splice—improving genome-wide variant effect prediction using deep learning-derived splice scores

Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer’s disease risk genes

Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses

Interpretable prioritization of splice variants in diagnostic next-generation sequencing

Machine Learning Approaches for the Prioritization of Genomic Variants Impacting Pre-mRNA Splicing

SPiP: Splicing Prediction Pipeline, a machine learning tool for massive detection of exonic and intronic variant effects on mRNA splicing

Cross-ancestry genome-wide analysis of atrial fibrillation unveils disease biology and enables cardioembolic risk prediction

SpliceVault predicts the precise nature of variant-associated mis-splicing

MCAT Mutations Cause Nuclear LHON-like Optic Neuropathy


Chromosome-level scaffolding using multiple references

Ragout—a reference-assisted assembly tool for bacterial genomes

Essential interpretations of bioinformatics in COVID-19 pandemic

Draft Genome Sequence of Janthinobacterium sp. Strain SLB01, Isolated from the Diseased Sponge Lubomirskia baicalensis

Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice

Genome Analysis of the Janthinobacterium sp. Strain SLB01 from the Diseased Sponge of the Lubomirskia baicalensis

Complete Genome Sequence of Rhodococcus qingshengii Strain VKM Ac-2784D, Isolated from Elytrigia repens Rhizosphere

Draft Genome Sequence of the Green Microalga Chlorella sp. Strain BAC9706, Isolated from Lake Baikal, Russia

Janthinobacterium sp. Strain SLB01 as Pathogenic Bacteria for Sponge Lubomirskia baikalensis


Real-ESRGAN aims at developing Practical Algorithms for General Image/Video Restoration.

Real-ESRGAN: Training Real-World Blind Super-Resolution with Pure Synthetic Data

Finetuned Super-Resolution Generative Adversarial Network (Artificial Intelligence) Model for Calcium Deblooming in Coronary Computed Tomography Angiography

Perceptual Artifacts Localization for Image Synthesis Tasks

Solving Diffusion ODEs with Optimal Boundary Conditions for Better Image Super-Resolution


Elastic Malware Benchmark for Empowering Researchers

EMBER: An Open Dataset for Training Static PE Malware Machine Learning Models

Explaining Vulnerabilities of Deep Learning to Adversarial Malware Binaries

A Review of Computer Vision Methods in Network Security

Leveraging Uncertainty for Improved Static Malware Detection Under Extreme False Positive Constraints

Out of Distribution Data Detection Using Dropout Bayesian Neural Networks

Sisyfos: A Modular and Extendable Open Malware Analysis Platform

On the Limitations of Continual Learning for Malware Classification

A Wolf in Sheep’s Clothing: Query-Free Evasion Attacks Against Machine Learning-Based Malware Detectors with Generative Adversarial Networks

AutoWS-Bench-101: Benchmarking Automated Weak Supervision with 100 Labels

IoTGeM: Generalizable Models for Behaviour-Based IoT Attack Detection