[MLSys 2024 Best Paper Award] AWQ: Activation-aware Weight Quantization for LLM Compression and Acceleration

GPTQ: Accurate Post-Training Quantization for Generative Pre-trained Transformers

VILA: On Pre-training for Visual Language Models

QuantEase: Optimization-based Quantization for Language Models

Decoding Compressed Trust: Scrutinizing the Trustworthiness of Efficient
  LLMs Under Compression

IntactKV: Improving Large Language Model Quantization by Keeping Pivot
  Tokens Intact

Enhancing Computation Efficiency in Large Language Models through Weight and Activation Quantization

EfficientQAT: Efficient Quantization-Aware Training for Large Language
  Models


Torch implementation of neural style algorithm

Arbitrary Style Transfer in Real-time with Adaptive Instance Normalization

A Neural Algorithm of Artistic Style

A Learned Representation For Artistic Style

Demystifying Neural Style Transfer

Artistic Style Transfer for Videos

Artistic Style Transfer for Videos and Spherical Images

International Journal of Computer Vision

Laplacian-Steered Neural Style Transfer

PROCEEDINGS OF THE 2017 ACM MULTIMEDIA CONFERENCE (MM'17)

Multimodal Style Transfer via Graph Cuts

A Deep-Learning-Based Geological Parameterization for History Matching Complex Models

Makeup like a superstar: Deep Localized Makeup Transfer Network


Weight Agnostic Neural Networks

Neuroevolution of Self-Interpretable Agents

Genetic and Evolutionary Computation Conference

The Sensory Neuron as a Transformer: Permutation-Invariant Neural Networks for Reinforcement Learning

Modern Evolution Strategies for Creativity: Fitting Concrete Images and Abstract Concepts

Neural Bridge Sampling for Evaluating Safety-Critical Autonomous Systems

Learning to Predict Without Looking Ahead: World Models Without Forward Prediction


A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK

Genomic reconstruction of the SARS-CoV-2 epidemic in England

A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

The Evolutionary Landscape of SARS-CoV-2 Variant B.1.1.519 and Its Clinical Impact in Mexico City

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing

Whole-Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina MiSeq ARTIC Protocol

MAJORA: Continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants

Genomic epidemiology of COVID-19 in care homes in the east of England

Genomic analysis of SARS-CoV-2 reveals local viral evolution in Ghana

Experimental biology and medicine (Maywood, N.J.)


Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

To mask or not to mask: Modeling the potential for face mask use by the general public to curtail the COVID-19 pandemic

Effective containment explains sub-exponential growth in confirmed cases of recent COVID-19 outbreak in Mainland China

A Time-Dependent SIR Model for COVID-19 With Undetectable Infected Persons

Modeling COVID-19 scenarios for the United States

Forecasting: theory and practice

Spectral Temporal Graph Neural Network for Multivariate Time-series Forecasting

The depressive state of Denmark during the COVID-19 pandemic

Rapid surveillance of COVID-19 in the United States using a prospective space-time scan statistic: Detecting and evaluating emerging clusters

Estimating and simulating a SIRD Model of COVID-19 for many countries, states, and cities

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States


Contrastive Language-Audio Pretraining

Large-scale Contrastive Language-Audio Pretraining with Feature Fusion and Keyword-to-Caption Augmentation

Simple and Controllable Music Generation

AudioLDM 2: Learning Holistic Audio Generation with Self-supervised Pretraining

Moûsai: Text-to-Music Generation with Long-Context Latent Diffusion

MusicLDM: Enhancing Novelty in Text-to-Music Generation Using Beat-Synchronous Mixup Strategies

Fast Timing-Conditioned Latent Audio Diffusion

Audiobox: Unified Audio Generation with Natural Language Prompts

LLark: A Multimodal Foundation Model for Music

Masked Audio Generation using a Single Non-Autoregressive Transformer

Long-form music generation with latent diffusion


Individual tree point clouds and tree measurements from multi-platform laser scanning in German forests

Virtual laser scanning with HELIOS++: A novel take on ray tracing-based simulation of topographic 3D laser scanning


The code for our newly accepted paper in Pattern Recognition 2020: "U^2-Net: Going Deeper with Nested U-Structure for Salient Object Detection."

U2-Net: Going deeper with nested U-structure for salient object detection

Object Segmentation Without Labels with Large-Scale Generative Models

Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images

Neural Optimal Transport with General Cost Functionals

A convolutional neural network with pixel-wise sparse graph reasoning for COVID-19 lesion segmentation in CT images

Building Outline Extraction Directly Using the U2-Net Semantic Segmentation Model from High-Resolution Aerial Images and a Comparison Study

PSGR: Pixel-wise Sparse Graph Reasoning for COVID-19 Pneumonia Segmentation in CT Images

JustDeepIt: Software tool with graphical and character user interfaces for deep learning-based object detection and segmentation in image analysis


Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Fast and accurate de novo genome assembly from long uncorrected reads

Edlib: a C/C++ library for fast, exact sequence alignment using edit distance

Co-linear Chaining with Overlaps and Gap Costs

C/C++ biblioteka za dinamičko programiranje korištenjem SIMD instrukcija

Automated Model Learning for Accurate Detection of Malicious Digital Documents


Canvas - Copy number variant (CNV) calling from DNA sequencing data

Canvas: versatile and scalable detection of copy number variants

Canvas SPW: calling de novo copy number variants in pedigrees

The molecular landscape of well differentiated retroperitoneal liposarcoma


Super-scale your images and run experiments with Residual Dense and Adversarial Networks.

Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network

Residual Dense Network for Image Super-Resolution

ESRGAN: Enhanced Super-Resolution Generative Adversarial Networks

Diabetic foot ulcers monitoring by employing super resolution and noise reduction deep learning techniques

Chameleons on Cloudlets: Elastic Edge Computing Through Microservice Variants


SMPL-X

Capturing and Inferring Dense Full-Body Human-Scene Contact

EgoBody: Human Body Shape and Motion of Interacting People from Head-Mounted Devices

Human-Aware Object Placement for Visual Environment Reconstruction

Representation learning of vertex heatmaps for 3D human mesh reconstruction from multi-view images

3D Shape Sequence of Human Comparison and Classification using Current and Varifolds


The Shine compiler for the RISE language

Sketch-Guided Equality Saturation: Scaling Equality Saturation to Complex Optimizations in Languages with Bindings

Sketch-Guided Equality Saturation: Scaling Equality Saturation to Complex Optimizations of Functional Programs

Guided Equality Saturation

Proceedings of the ACM on programming languages

A Domain-Extensible Compiler with Controllable Automation of Optimisations

Latent Idiom Recognition for a Minimalist Functional Array Language using Equality Saturation


ImageD11 is a python code for identifying individual grains in spotty area detector X-ray diffraction images.

Scanning 3DXRD Measurement of Grain Growth, Stress, and Formation of Cu6Sn5 around a Tin Whisker during Heat Treatment

Intragranular strain estimation in far-field scanning X-ray diffraction using a Gaussian process

In situ synchrotron X-ray multimodal experiment to study polycrystal plasticity

Revealing per-grain and neighbourhood stress interactions of a deforming ferritic steel via three-dimensional X-ray diffraction

Non-destructive determination of phase, size, and strain of individual grains in polycrystalline photovoltaic materials

CNN-Based Laue Spot Morphology Predictor for Reliable Crystallographic Descriptor Estimation

Textures Induced by the Coesite‐Stishovite Transition and Implications for the Visibility of the X‐Discontinuity

Implementing and evaluating far-field 3D X-ray diffraction at the I12 JEEP beamline, Diamond Light Source

Grain-level effects on in-situ deformation-induced phase transformations in a complex-phase steel using 3DXRD and EBSD

In situ analysis of cast irons mechanical behaviour using synchrotron x-ray tomography and 3DXRD

IOP Conference Series: Materials Science and Engineering


Virtuoso is a high-performance and scalable Multi-Model RDBMS, Data Integration Middleware, Linked Data Deployment, and HTTP Application Server Platform

KQA Pro: A Dataset with Explicit Compositional Programs for Complex Question Answering over Knowledge Base

Pattern-based design applied to cultural heritage knowledge graphs

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base

GraphQ IR: Unifying the Semantic Parsing of Graph Query Languages with One Intermediate Representation

KQA Pro: A Large Diagnostic Dataset for Complex Question Answering over Knowledge Base.

Integration of Web APIs and Linked Data using SPARQL Micro-Services. Application to Biodiversity Use Cases

Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia.

METEOR For Multiple Target Languages Using DBnary

Correlation and Substitution in SPARQL

Native Execution of GraphQL Queries over RDF Graphs Using Multi-Way Joins


InternEvo is an open-sourced lightweight training framework aims to support model pre-training without the need for extensive dependencies.

InternLM-Math: Open Math Large Language Models Toward Verifiable
  Reasoning

Characterization of Large Language Model Development in the Datacenter

InternEvo: Efficient Long-sequence Large Language Model Training via Hybrid Parallelism and Redundant Sharding

AMSP: Super-Scaling LLM Training via Advanced Model States Partitioning

LoongTrain: Efficient Training of Long-Sequence LLMs with Head-Context
  Parallelism


Plot structural variant signals from many BAMs and CRAMs

Samplot: a platform for structural variant visual validation and automated filtering

A Comprehensive Map of Mycobacterium tuberculosis Complex Regions of Difference

Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies

Lager Yeast Design Through Meiotic Segregation of a Saccharomyces cerevisiae × Saccharomyces eubayanus Hybrid

Analysis of structural variation among inbred mouse strains

Visualization tools for human structural variations identified by whole-genome sequencing

Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage

duphold: scalalable, depth-based annotation and curation of high-confidence structural variant calls

Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice


A Django project that powers the backend of Terraso platform.


Tools for merging pretrained large language models.

Language Models are Super Mario: Absorbing Abilities from Homologous Models as a Free Lunch

SOLAR 10.7B: Scaling Large Language Models with Simple yet Effective Depth Up-Scaling

Evolutionary Optimization of Model Merging Recipes

Arcee's MergeKit: A Toolkit for Merging Large Language Models

Model Stock: All we need is just a few fine-tuned models

Online Merging Optimizers for Boosting Rewards and Mitigating Tax in
  Alignment

WISE: Rethinking the Knowledge Memory for Lifelong Model Editing of
  Large Language Models

OPDAI at SemEval-2024 Task 6: Small LLMs can Accelerate Hallucination
  Detection with Weakly Supervised Data

It's Morphing Time: Unleashing the Potential of Multiple LLMs via Multi-objective Optimization

Merge, Ensemble, and Cooperate! A Survey on Collaborative Strategies in the Era of Large Language Models


High accuracy RAG for answering questions from scientific documents with citations

Augmenting large language models with chemistry tools

14 examples of how LLMs can transform materials science and chemistry: a reflection on a large language model hackathon

ChemCrow: Augmenting large-language models with chemistry tools

PaperQA: Retrieval-Augmented Generative Agent for Scientific Research

Agent-based Learning of Materials Datasets from Scientific Literature

Galactic ChitChat: Using Large Language Models to Converse with Astronomy Literature


phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Dynamics of the human gut microbiome in inflammatory bowel disease

Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity

Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

Rhizobacteria Communities of Phytoremediation Plant Species in Petroleum Hydrocarbon Contaminated Soil of the Sudd Ecosystem, South Sudan

Children and adolescents with attention deficit hyperactivity disorder and autism spectrum disorder share distinct microbiota compositions

The Microbiota and Abundance of the Class 1 Integron-Integrase Gene in Tropical Sewage Treatment Plant Influent and Activated Sludge

Lifelong dietary omega-3 fatty acid suppresses thrombotic potential through gut microbiota alteration in aged mice

Mobility of β-Lactam Resistance Under Bacterial Co-infection and Ampicillin Treatment in a Mouse Model


Keras implementations of Generative Adversarial Networks.

Image-to-Image Translation with Conditional Adversarial Networks

Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks

Unsupervised Representation Learning with Deep Convolutional Generative Adversarial Networks

Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network

Improved Training of Wasserstein GANs

Context Encoders: Feature Learning by Inpainting

On the Effectiveness of Least Squares Generative Adversarial Networks

Wasserstein GAN

InfoGAN: Interpretable Representation Learning by Information Maximizing Generative Adversarial Nets

Adversarial Autoencoders


Climate from Space application for ESA's CCI+ program.


Differentiate all the things!

TorchMD: A Deep Learning Framework for Molecular Simulations

Journal of chemical theory and computation

Differentiable simulation to develop molecular dynamics force fields for disordered proteins


pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Single-cell transcriptomics identifies divergent developmental lineage trajectories during human pituitary development

The single-cell and spatial transcriptional landscape of human gastrulation and early brain development

Single-cell profiling of transcriptome and histone modifications with EpiDamID

Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities

Single-cell sequencing identifies differentiation-related markers for molecular classification and recurrence prediction of PitNET

NADase CD38 is a key determinant of ovarian aging

A TCF4/BRD4-dependent regulatory network confers cross-resistance to targeted and immune checkpoint therapy in melanoma

Dedifferentiated Schwann cell-derived TGF-β3 is essential for the neural system to promote wound healing

Deciphering the Molecular Characteristics of Human Idiopathic Nonobstructive Azoospermia from the Perspective of Germ Cells

scPlant: A versatile framework for single-cell transcriptomic data analysis in plants


Code for the paper "Language Models are Unsupervised Multitask Learners"

Multitask Prompted Training Enables Zero-Shot Task Generalization

RealToxicityPrompts: Evaluating Neural Toxic Degeneration in Language Models

Leveraging Pre-trained Checkpoints for Sequence Generation Tasks

A Comprehensive Survey of AI-Generated Content (AIGC): A History of Generative AI from GAN to ChatGPT

True Few-Shot Learning with Language Models

A Knowledge-Enhanced Pretraining Model for Commonsense Story Generation

Artificial Intelligence versus Maya Angelou: Experimental evidence that people cannot differentiate AI-generated from human-written poetry

Towards Making the Most of BERT in Neural Machine Translation

Fake news detection based on news content and social contexts: a transformer-based approach

International Journal of Data Science and Analytics


Python implementation of the rulefit algorithm

Generalized Linear Rule Models

Rule Extraction in Unsupervised Anomaly Detection for Model Explainability: Application to OneClass SVM

Generating Explainable Rule Sets from Tree-Ensemble Learning Methods by Answer Set Programming

Fire: An Optimization Approach for Fast Interpretable Rule Extraction

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining

HiPaR: Hierarchical Pattern-aided Regression

SIBILA: A novel interpretable ensemble of general-purpose machine learning models applied to medical contexts


Creative Commons Attribution 4.0 International

Global Forest Carbon Database


The Kotlin Programming Language.

Reflekt: a Library for Compile-Time Reflection in Kotlin

Proceedings of the 44th International Conference on Software Engineering: Software Engineering in Practice

Contract Usage and Evolution in Android Mobile Applications

Kotlin from the perspective of a static analyzer developer

Proceedings of the Institute for System Programming of the RAS


Open Energy Modelling Framework - Python toolbox for energy system modelling and optimisation

oemof.solph—A model generator for linear and mixed-integer linear optimisation of energy systems

Demand Response Analysis Framework (DRAF): An Open-Source Multi-Objective Decision Support Tool for Decarbonizing Local Multi-Energy Systems


JDet is an object detection benchmark based on Jittor. Mainly focus on aerial image object detection (oriented object detection).

MMRotate: A Rotated Object Detection Benchmark using PyTorch

Proceedings of the 30th ACM International Conference on Multimedia

The KFIoU Loss for Rotated Object Detection

H2RBox-v2: Incorporating Symmetry for Boosting Horizontal Box Supervised Oriented Object Detection

Theoretically Achieving Continuous Representation of Oriented Bounding Boxes


Fast and frugal disk based k-mer counter

KMC 3: counting and manipulating k-mer statistics

KMC 2: fast and resource-frugal k-mer counting

Disk-based k-mer counting on a PC

Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2

Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding Insects

Estimation of genome size using k-mer frequencies from corrected long reads

Subgenome dominance shapes novel gene evolution in the decaploid pitcher plantNepenthes gracilis

SPRISS: Approximating Frequent k-mers by Sampling Reads, and Applications

Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-Pro


An Arduino library to give environmental sensors a common interface of functions for use with Arduino-framework dataloggers, such as the EnviroDIY Mayfly.

Low-Cost, Open-Source, and Low-Power: But What to Do With the Data?


The image prompt adapter is designed to enable a pretrained text-to-image diffusion model to generate images with image prompt.

IP-Adapter: Text Compatible Image Prompt Adapter for Text-to-Image Diffusion Models

The Chosen One: Consistent Characters in Text-to-Image Diffusion Models

Trajectory Consistency Distillation: Improved Latent Consistency
  Distillation by Semi-Linear Consistency Function with Trajectory Mapping

Arc2Face: A Foundation Model for ID-Consistent Human Faces

OneActor: Consistent Character Generation via Cluster-Conditioned Guidance


Otter, a multi-modal model based on OpenFlamingo (open-sourced version of DeepMind's Flamingo), trained on MIMIC-IT and showcasing improved instruction-following and in-context learning ability.

Otter: A Multi-Modal Model with In-Context Instruction Tuning

Instruction Tuning for Large Language Models: A Survey

OpenFlamingo: An Open-Source Framework for Training Large Autoregressive Vision-Language Models

MIMIC-IT: Multi-Modal In-Context Instruction Tuning

OtterHD: A High-Resolution Multi-modality Model

Machine Vision Therapy: Multimodal Large Language Models Can Enhance Visual Robustness via Denoising In-Context Learning

Debiasing Multimodal Large Language Models

AffectGPT: Dataset and Framework for Explainable Multimodal Emotion
  Recognition


A tool for estimating repeat sizes

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

Whole genome sequencing for the diagnosis of neurological repeat expansion disorders in the UK: a retrospective diagnostic accuracy and prospective clinical validation study

Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Use of whole genome sequencing to determine genetic basis of suspected mitochondrial disorders: cohort study

Structural variation analysis of 6,500 whole genome sequences in amyotrophic lateral sclerosis

High-depth whole-genome sequencing identifies structure variants, copy number variants and short tandem repeats associated with Parkinson’s disease


Pretrained ConvNets for pytorch: NASNet, ResNeXt, ResNet, InceptionV4, InceptionResnetV2, Xception, DPN, etc.

Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning

Progressive Neural Architecture Search

Do ImageNet Classifiers Generalize to ImageNet?

Measuring Robustness to Natural Distribution Shifts in Image Classification

Skip Connections Matter: On the Transferability of Adversarial Examples Generated with ResNets

UNIQ: Uniform Noise Injection for Non-Uniform Quantization of Neural Networks

Subspace Attack: Exploiting Promising Subspaces for Query-Efficient Black-box Attacks

MultiGrain: a unified image embedding for classes and instances

An Overview of Neural Network Compression

Consensus-Driven Propagation in Massive Unlabeled Data for Face Recognition


Unsupervised Learning for Image Registration

An overview of deep learning in medical imaging focusing on MRI

VoxelMorph: A Learning Framework for Deformable Medical Image Registration

An Unsupervised Learning Model for Deformable Medical Image Registration

Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration

Medical Image Computing and Computer-Assisted Intervention

Unsupervised Learning of Probabilistic Diffeomorphic Registration for Images and Surfaces

Fast Symmetric Diffeomorphic Image Registration with Convolutional Neural Networks

A Survey of Deep Learning for Scientific Discovery

HyperMorph: Amortized Hyperparameter Learning for Image Registration

Learning Conditional Deformable Templates with Convolutional Networks

DeepTag: An Unsupervised Deep Learning Method for Motion Tracking on Cardiac Tagging Magnetic Resonance Images


Full-Length Alternative Isoform analysis of RNA

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv : the preprint server for biology

Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Translational repression of NMD targets by GIGYF2 and EIF4E2

A high-quality reference genome for the fission yeastSchizosaccharomyces osmophilus

Detecting haplotype-specific transcript variation in long reads with FLAIR2

Alternative mRNA Splicing Controls the Functions of the Histone H3K27 Demethylase UTX/KDM6A

Full-length transcript alterations in human bronchial epithelial cells with U2AF1 S34F mutations.

Disruption of mitochondrial pyruvate oxidation in dorsal root ganglia drives persistent nociceptive sensitization and causes pervasive transcriptomic alterations

Blockade of pro-fibrotic response mediated by the miR-143/-145 cluster prevents targeted therapy-induced phenotypic plasticity and resistance in melanoma


Bayesian multi-object tracking

A Liquid to Solid Phase Transition Underlying Pathological Huntingtin Exon1 Aggregation

Automated Deep Lineage Tree Analysis Using a Bayesian Single Cell Tracking Approach

Local cellular neighborhood controls proliferation in cell competition

Cell-scale biophysical determinants of cell competition in epithelia


This is a fork of the Cooja network simulator from contiki-os/contiki

Energy-Efficient Message Bundling with Delay and Synchronization Constraints in Wireless Sensor Networks

Development and Validation of an ISA100.11a Simulation Model for Accurate Industrial WSN Planning and Deployment

DRiPLOF: An RPL Extension for Multi-Interface Wireless Sensor Networks in Interference-Prone Environments


The NASA Ames Stereo Pipeline is a suite of automated geodesy & stereogrammetry tools designed for processing planetary imagery captured from orbiting and landed robotic explorers on other planets.

Tree, Shrub, and Grass Classification Using Only RGB Images

Rapid Single Image-Based DTM Estimation from ExoMars TGO CaSSIS Images Using Generative Adversarial U-Nets

Three-Dimensional Modelling of Past and Present Shahjahanabad through Multi-Temporal Remotely Sensed Data


High-Resolution Image Synthesis with Latent Diffusion Models

Grounding DINO: Marrying DINO with Grounded Pre-Training for Open-Set Object Detection

ProlificDreamer: High-Fidelity and Diverse Text-to-3D Generation with Variational Score Distillation

Structure and Content-Guided Video Synthesis with Diffusion Models

ModelScope Text-to-Video Technical Report

VideoComposer: Compositional Video Synthesis with Motion Controllability

TexFusion: Synthesizing 3D Textures with Text-Guided Image Diffusion Models

TF-ICON: Diffusion-Based Training-Free Cross-Domain Image Composition

End-to-End Diffusion Latent Optimization Improves Classifier Guidance

BOOT: Data-free Distillation of Denoising Diffusion Models with Bootstrapping


A tool for estimating the future energy use, carbon emissions, and capital and operating cost impacts of energy efficiency and demand flexibility technologies in the U.S. residential and commercial building sectors.


Analysis of convergence between organismal traits and DNA/protein sequences

RERconverge: an R package for associating evolutionary rates with convergent traits

Pan-mammalian analysis of molecular constraints underlying extended lifespan

Phylogenetic Permulations: A Statistically Rigorous Approach to Measure Confidence in Associations in a Phylogenetic Context


A collection of fuzzers in a harness for testing the SpiderMonkey JavaScript engine.

The Art, Science, and Engineering of Fuzzing: A Survey

Is Your Code Generated by ChatGPT Really Correct? Rigorous Evaluation of Large Language Models for Code Generation

ASE - FairFuzz: a targeted mutation strategy for increasing greybox fuzz testing coverage

PROCEEDINGS OF THE 2018 33RD IEEE/ACM INTERNATIONAL CONFERENCE ON AUTOMTED SOFTWARE ENGINEERING (ASE' 18)

SQUIRREL: Testing Database Management Systems with Language Validity and Coverage Feedback

NNSmith: Generating Diverse and Valid Test Cases for Deep Learning Compilers

Liveness-Driven Random Program Generation

WhiteFox: White-Box Compiler Fuzzing Empowered by Large Language Models

Exposing Bugs in JavaScript Engines through Test Transplantation and Differential Testing

CorbFuzz: Checking Browser Security Policies with Fuzzing


Ultra-deep search for novel viruses

Transcriptome mining extends the host range of theFlaviviridaeto non-bilaterians

Viroid-like colonists of human microbiomes

A parasite odyssey: An RNA virus concealed in Toxoplasma gondii

NeoRdRp2 with improved seed data, annotations, and scoring


Codebase for Image Classification Research, written in PyTorch.

Deep Residual Learning for Image Recognition

EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks

Aggregated Residual Transformations for Deep Neural Networks

Designing Network Design Spaces

Exploring Randomly Wired Neural Networks for Image Recognition

On Network Design Spaces for Visual Recognition

Fast and Accurate Model Scaling

Are Labels Necessary for Neural Architecture Search?

Generic Neural Architecture Search via Regression

Self-distillation with Batch Knowledge Ensembling Improves ImageNet Classification


A higher-level Neural Network library for microcontrollers.

A Comprehensive Review and a Taxonomy of Edge Machine Learning: Requirements, Paradigms, and Techniques

Echo State Networks for Estimating Exteroceptive Conditions From Proprioceptive States in Quadruped Robots

Evaluation of Convolution Primitives for Embedded Neural Networks on 32-bit Microcontrollers

Evaluation of Parameter-based Attacks against Embedded Neural Networks with Laser Injection


Benchmarking analysis of data integration tools

Benchmarking atlas-level data integration in single-cell genomics

scMC learns biological variation through the alignment of multiple single-cell genomics datasets

Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation

Evaluating batch correction methods for image-based cell profiling


This tool parses log data and allows to define analysis pipelines for anomaly detection. It was designed to run the analysis with limited resources and lowest possible permissions to make it suitable for production server use.

AMiner: A Modular Log Data Analysis Pipeline for Anomaly-based Intrusion Detection

Behavior-Based Anomaly Detection in Log Data of Physical Access Control Systems

IEEE Transactions on Dependable and Secure Computing

Introducing a New Alert Data Set for Multi-Step Attack Analysis


A cloud platform for greenhouse gas (GHG) data analysis and collaboration.


Modeling of residential buildings in EnergyPlus using OpenStudio/HPXML.


Easily train your own text-generating neural network of any size and complexity on any text dataset with a few lines of code.

Towards Debiasing Sentence Representations

Constrained Language Models for Interactive Poem Generation

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION

Unsupervised Inflection Generation Using Neural Language Modeling


TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization

Impact of DNA methylation on 3D genome structure

Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs

Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like dynamical behavior of chromatin

Global chromatin conformation differences in the Drosophila dosage compensated chromosome X

Application of Hi-C and other omics data analysis in human cancer and cell differentiation research

Computational and structural biotechnology journal


A series of convenience functions to make basic image processing operations such as translation, rotation, resizing, skeletonization, and displaying Matplotlib images easier with OpenCV and Python.

Micro-expression detection in long videos using optical flow and recurrent neural networks

Patch Attention Layer of Embedding Handcrafted Features in CNN for Facial Expression Recognition

An OpenCV-Based Approach for Automated Cardiac Rhythm Measurement in Zebrafish from Video Datasets

A Metamorphic Testing Approach for Assessing Question Answering Systems

IndoorCare: Low-Cost Elderly Activity Monitoring System through Image Processing


Creative Commons Attribution Share Alike 4.0 International

SimulEval: A General Evaluation Toolkit for Simultaneous Translation

Information-Transport-based Policy for Simultaneous Translation

Streaming Simultaneous Speech Translation with Augmented Memory Transformer

An Empirical Study of End-to-end Simultaneous Speech Translation Decoding Strategies

End-to-End Simultaneous Speech Translation with Differentiable Segmentation

TransLLaMa: LLM-based Simultaneous Translation System

Unified Segment-to-Segment Framework for Simultaneous Sequence Generation

The Xiaomi AI Lab’s Speech Translation Systems for IWSLT 2023 Offline Task, Simultaneous Task and Speech-to-Speech Task

Proceedings of the 20th International Conference on Spoken Language Translation (IWSLT 2023)

A Non-autoregressive Generation Framework for End-to-End Simultaneous Speech-to-Any Translation

Implicit Memory Transformer for Computationally Efficient Simultaneous Speech Translation

Training Simultaneous Speech Translation with Robust and Random Wait-k-Tokens Strategy

Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing


ACHE is a web crawler for domain-specific search.

inTIME: A Machine Learning-Based Framework for Gathering and Leveraging Web Data to Cyber-Threat Intelligence

A Crawler Architecture for Harvesting the Clear, Social, and Dark Web for IoT-Related Cyber-Threat Intelligence

Hydria: An Online Data Lake for Multi-Faceted Analytics in the Cultural Heritage Domain

Bootstrapping Domain-Specific Content Discovery on the Web

WEB CONFERENCE 2019: PROCEEDINGS OF THE WORLD WIDE WEB CONFERENCE (WWW 2019)

NLP-Based Techniques for Cyber Threat Intelligence

ThreatCrawl: A BERT-based Focused Crawler for the Cybersecurity Domain


Interface to the Global Biodiversity Information Facility API

The ghosts of forests past and future: deforestation and botanical sampling in the Brazilian Amazon

Ligustrum lucidum W. T. Aiton (broad-leaf privet) demonstrates climatic niche shifts during global-scale invasion

Adaptive evolution of seed oil content in angiosperms: accounting for the global patterns of seed oils

Explicit integration of dispersal-related metrics improves predictions of SDM in predatory arthropods

IMPACT OF CLIMATE CHANGE ON THE GEOGRAPHICAL DISTRIBUTION OF A CLOUD FOREST INDICATOR TREE SPECIES

A preliminary inventory of the catfishes of the lower Rio Nhamundá, Brazil (Ostariophysi, Siluriformes)

Color and morphological differentiation in the Sinaloa Wren (Thryophilus sinaloa) in the tropical dry forests of Mexico: The role of environment and geographic isolation

A global assessment of tourism and recreation conservation threats to prioritise interventions

SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records

Climate based model in determining the distribution pattern of Cecropia peltata L across global landscape

IOP Conference Series: Earth and Environmental Science


Find dates inside text using Python and get back datetime objects

Looking Beyond IoCs: Automatically Extracting Attack Patterns from External CTI

Unsupervised Key Event Detection from Massive Text Corpora

Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining

An Empirical Study on Code Comment Completion

htmldate: A Python package to extract publication dates from web pages

Unsupervised Evaluation of Code LLMs with Round-Trip Correctness


a state-of-the-art-level open visual language model | 多模态预训练模型

CogVLM: Visual Expert for Pretrained Language Models

CogAgent: A Visual Language Model for GUI Agents

Safety of Multimodal Large Language Models on Images and Text

HPE-CogVLM: New Head Pose Grounding Task Exploration on Vision Language Model


TinyML AI inference library

DORY: Automatic End-to-End Deployment of Real-World DNNs on Low-Cost IoT MCUs

Machine Learning for Microcontroller-Class Hardware: A Review

Edge Impulse: An MLOps Platform for Tiny Machine Learning

TinyML Benchmark: Executing Fully Connected Neural Networks on Commodity Microcontrollers

Kafka-ML: connecting the data stream with ML/AI frameworks

TinyOdom: Hardware-Aware Efficient Neural Inertial Navigation

Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies

An Optimized Recurrent Unit for Ultra-Low-Power Keyword Spotting

Timing Black-Box Attacks: Crafting Adversarial Examples through Timing Leaks against DNNs on Embedded Devices

IACR Transactions on Cryptographic Hardware and Embedded Systems


syzkaller is an unsupervised coverage-guided kernel fuzzer

The Art, Science, and Engineering of Fuzzing: A Survey

SlowFuzz: Automated Domain-Independent Detection of Algorithmic Complexity Vulnerabilities

Fuzzing Hardware Like Software

Frankenstein: Advanced Wireless Fuzzing to Exploit New Bluetooth Escalation Targets

Fuzz4All: Universal Fuzzing with Large Language Models

Automated Detection, Exploitation, and Elimination of Double-Fetch Bugs using Modern CPU Features

An Empirical Study of OSS-Fuzz Bugs

STADS: Software Testing as Species Discovery

DriveFuzz

Proceedings of the 2022 ACM SIGSAC Conference on Computer and Communications Security

SyzScope: Revealing High-Risk Security Impacts of Fuzzer-Exposed Bugs in Linux kernel


ns-3 module for simulating mmWave-based cellular systems. See https://ieeexplore.ieee.org/document/8344116/ (open access) as a reference.

End-to-End Simulation of 5G mmWave Networks

IEEE Communications Surveys and Tutorials

Improved Handover Through Dual Connectivity in 5G mmWave Mobile Networks

IEEE Journal on Selected Areas in Communications

Modeling and Design of Millimeter-Wave Networks for Highway Vehicular Communication

5G mmWave Module for ns-3 Network Simulator

ns-3 Implementation of the 3GPP MIMO Channel Model for Frequency Spectrum above 6 GHz

A Framework for End-to-End Evaluation of 5G mmWave Cellular Networks in ns-3

The Bufferbloat Problem over Intermittent Multi-Gbps mmWave Links

Caching-Aided Collaborative D2D Operation for Predictive Data Dissemination in Industrial IoT

ns-O-RAN: Simulating O-RAN 5G Systems in ns-3

mmWave Enabled Connected Autonomous Vehicles: A Use Case with V2V Cooperative Perception


The Harmonized Emissions Component (HEMCO), developed by the GEOS-Chem Support Team.


Reinforcement Learning in PyTorch

Decoupling Representation Learning from Reinforcement Learning

An Empirical Model of Large-Batch Training

Accelerated Methods for Deep Reinforcement Learning

Pretraining Representations for Data-Efficient Reinforcement Learning

rlpyt: A Research Code Base for Deep Reinforcement Learning in PyTorch

Adversarial Soft Advantage Fitting: Imitation Learning without Policy Optimization

Redeeming Intrinsic Rewards via Constrained Optimization

Distributionally Robust Policy Learning via Adversarial Environment Generation

Quantile Constrained Reinforcement Learning: A Reinforcement Learning Framework Constraining Outage Probability

Karolos: An Open-Source Reinforcement Learning Framework for Robot-Task Environments


Framework for indexing and querying ocean-sea ice model output.

Surface heating steers planetary-scale ocean circulation


A powerful and flexible machine learning platform for drug discovery

TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery

��^2���������� as a Two-Step Graph Generative Models for Retrosynthesis Prediction

SemiRetro: Semi-template framework boosts deep retrosynthesis prediction

Contrastive Learning and Mixture of Experts Enables Precise Vector
  Embeddings


Digital Twins Definition Language

Digital Twin and Internet of Things—Current Standards Landscape

Twinbase: Open-Source Server Software for the Digital Twin Web

Towards Integrated Digital Twins for Industrial Products: Case Study on an Overhead Crane

An approach for leveraging Digital Twins in agent-based production systems

Enabling Preventive Conservation of Historic Buildings Through Cloud-Based Digital Twins: A Case Study in the City Theatre, Norrköping

Proposal of Mapping Digital Twins Definition Language to Open Platform Communications Unified Architecture


open-source IEEE 802.11 WiFi baseband FPGA (chip) design: driver, software

IRShield: A Countermeasure Against Adversarial Physical-Layer Wireless Sensing

openwifi CSI fuzzer for authorized sensing and covert channels

RT-WiFi on Software-Defined Radio: Design and Implementation

Accelerating FPGA-Based Wi-Fi Transceiver Design and Prototyping by High-Level Synthesis


Geometry Processing Library for Python

Hex-Mesh Generation and Processing: A Survey

Corticothalamic feedback sculpts visual spatial integration in mouse thalamus

Controlling the error on target motion through real‐time mesh adaptation: Applications to deep brain stimulation

International journal for numerical methods in biomedical engineering

Shape analysis of railway ballast stones: curvature-based calculation of particle angularity

PIEMAP: Personalized Inverse Eikonal Model from Cardiac Electro-Anatomical Maps

Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges

Learning Harmonic Molecular Representations on Riemannian Manifold

InSphereNet: a Concise Representation and Classification Method for 3D Object

Surface Reconstruction from Structured Light Images Using Differentiable Rendering

MULTI-MODAL SEMANTIC MESH SEGMENTATION IN URBAN SCENES

XXIV ISPRS CONGRESS IMAGING TODAY, FORESEEING TOMORROW, COMMISSION II

Composing Music Inspired by Sculpture: A Cross-Domain Mapping and Genetic Algorithm Approach


Using Low-rank adaptation to quickly fine-tune diffusion models.

DreamBooth: Fine Tuning Text-to-Image Diffusion Models for Subject-Driven Generation

An Image is Worth One Word: Personalizing Text-to-Image Generation using Textual Inversion

Pivotal Tuning for Latent-based Editing of Real Images

Compacter: Efficient Low-Rank Hypercomplex Adapter Layers

Break-A-Scene: Extracting Multiple Concepts from a Single Image

HyperDreamBooth: HyperNetworks for Fast Personalization of Text-to-Image Models

Face0: Instantaneously Conditioning a Text-to-Image Model on a Face

Navigating Text-To-Image Customization: From LyCORIS Fine-Tuning to Model Evaluation

RealFill: Reference-Driven Generation for Authentic Image Completion

Training-Free Consistent Text-to-Image Generation


Model parallel transformers in JAX and Haiku

PaLM: Scaling Language Modeling with Pathways

On the Opportunities and Risks of Foundation Models

Large Language Models are Zero-Shot Reasoners

A Survey of Large Language Models

Survey of Hallucination in Natural Language Generation

Direct Preference Optimization: Your Language Model is Secretly a Reward Model

Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism

Beyond the Imitation Game: Quantifying and extrapolating the capabilities of language models

RoFormer: Enhanced Transformer with Rotary Position Embedding

TruthfulQA: Measuring How Models Mimic Human Falsehoods


Nanopore sequence read simulator

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv : the preprint server for biology

Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

A spectral algorithm for fast de novo layout of uncorrected long nanopore reads

Trans-NanoSim characterizes and simulates nanopore RNA-seq data

Easing genomic surveillance: A comprehensive performance evaluation of long-read assemblers across multi-strain mixture data of HIV-1 and Other pathogenic viruses for constructing a user-friendly bioinformatic pipeline


Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, BasicVSR, SwinIR, ECBSR, etc. Also support StyleGAN2, DFDNet.

Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network

SwinIR: Image Restoration Using Swin Transformer

Recovering Realistic Texture in Image Super-resolution by Deep Spatial Feature Transform

BasicVSR: The Search for Essential Components in Video Super-Resolution and Beyond

GLEAN: Generative Latent Bank for Large-Factor Image Super-Resolution

Rethinking Alignment in Video Super-Resolution Transformers

SynFi: Automatic Synthetic Fingerprint Generation

GLEAN: Generative Latent Bank for Image Super-Resolution and Beyond

Semantic-guided Multi-Mask Image Harmonization

A Unified Conditional Framework for Diffusion-based Image Restoration


High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

Embedding Entities and Relations for Learning and Inference in Knowledge Bases

RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space

DGL-KE: Training Knowledge Graph Embeddings at Scale

LibKGE - A knowledge graph embedding library for reproducible research

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING: SYSTEM DEMONSTRATIONS

Marius: Learning Massive Graph Embeddings on a Single Machine

Inference Attacks Against Graph Neural Networks

A Survey on the Use of Graph Convolutional Networks for Combating Fake News

Knowledge Graph Completion with Counterfactual Augmentation

The DLCC Node Classification Benchmark for Analyzing Knowledge Graph Embeddings

μKG: A Library for Multi-source Knowledge Graph Embeddings and Applications


Darwin Core standard for sharing of information about biological diversity.

Integrating and visualizing primary data from prospective and legacy taxonomic literature

TR-Model. A Metadata Profile Application for Personal Data Transparency

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

Taxonaut: an application software for comparative display of multiple taxonomies with a use case of GBIF Species API

Biodiversity data standards for the organization and dissemination of complex research projects and digital twins: a guide


:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

sdmTMB: An R Package for Fast, Flexible, and User-Friendly Generalized Linear Mixed Effects Models with Spatial and Spatiotemporal Random Fields

The shadow model: how and why small choices in spatially explicit species distribution models affect predictions


Geographical Data Processing in the Cloud

An Overview of Platforms for Big Earth Observation Data Management and Analysis

A Cloud-Based Evaluation of the National Land Cover Database to Support New Mexico’s Food–Energy–Water Systems


Python audio and music signal processing library

madmom: a new Python Audio and Music Signal Processing Library

Listen, Denoise, Action! Audio-Driven Motion Synthesis with Diffusion Models

Feature Learning for Chord Recognition: The Deep Chroma Extractor

High-Level Control of Drum Track Generation Using Learned Patterns of Rhythmic Interaction

Deep learning-based automatic downbeat tracking: a brief review

Generating Music Medleys via Playing Music Puzzle Games

Towards multi-instrument drum transcription

The Freesound Loop Dataset and Annotation Tool

Multi-Modal Music Information Retrieval: Augmenting Audio-Analysis with Visual Computing for Improved Music Video Analysis

Source Separation of Piano Concertos Using Musically Motivated Augmentation Techniques

IEEE/ACM transactions on audio, speech, and language processing


Real-time end-to-end singing voice conversion system based on DDSP (Differentiable Digital Signal Processing)

Low-latency Real-time Voice Conversion on CPU


HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

The second decade of 3C technologies: detailed insights into nuclear organization

Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1

A mini foxtail millet with an Arabidopsis-like life cycle as a C4 model system

Analysis methods for studying the 3D architecture of the genome

Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma

De novo assembly of a wild pear (Pyrus betuleafolia) genome

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Cohesin residency determines chromatin loop patterns

The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts


A flexible framework for solving PDEs with modern spectral methods.

Single-hemisphere Dynamos in M-dwarf Stars

Learning in latent spaces improves the predictive accuracy of deep neural operators

The photometric variability of massive stars due to gravity waves excited by core convection

Rotation Reduces Convective Mixing in Jupiter and Other Gas Giants

Marginally stable thermal equilibria of Rayleigh-Bénard convection

Generalized quasi-linear approximation and non-normality in Taylor–Couette spiral turbulence

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Polynomial Chaos Expansions on Principal Geodesic Grassmannian
  Submanifolds for Surrogate Modeling and Uncertainty Quantification


micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

An Open MRI Dataset For Multiscale Neuroscience

BrainStat: A toolbox for brain-wide statistics and multimodal feature associations

Micapipe: A pipeline for multimodal neuroimaging and connectome analysis

Topographic divergence of atypical cortical asymmetry and atrophy patterns in temporal lobe epilepsy

Atypical intrinsic neural timescales in temporal lobe epilepsy

Shifts in structural connectome organization in the limbic and sensory systems of patients with episodic migraine


Single-cell mRNA quantification and differential analysis with Census

Characterization of the development of the mouse cochlear epithelium at the single cell level

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

Single-Cell Sequencing Reveals Types of Hepatopancreatic Cells and Haemocytes in Black Tiger Shrimp (Penaeus monodon) and Their Molecular Responses to Ammonia Stress

Epithelial Galectin-3 Induced the Mitochondrial Complex Inhibition and Cell Cycle Arrest of CD8+ T Cells in Severe/Critical COVID-19

International journal of molecular sciences

Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seq

Journal of translational genetics and genomics

AAV‐mediated Gene Cocktails Enhance Supporting Cell Reprogramming and Hair Cell Regeneration


Platform for Situated Intelligence

AffectiveSpotlight: Facilitating the Communication of Affective Responses from Audience Members during Online Presentations

Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems

Platform for Situated Intelligence

EMISSOR: A platform for capturing multimodal interactions as Episodic Memories and Interpretations with Situated Scenario-based Ontological References

Can Foundation Models Watch, Talk and Guide You Step by Step to Make a Cake?

Accelerating the Development of Multimodal, Integrative-AI Systems with Platform for Situated Intelligence


simona is an agent-based discrete-event power system simulation model developed @ie3-institute


CrypTFlow2: Practical 2-Party Secure Inference

SIRNN: A Math Library for Secure RNN Inference

GALA: Greedy ComputAtion for Linear Algebra in Privacy-Preserved Neural Networks

East: Efficient and Accurate Secure Transformer Framework for Inference

SOTERIA: In Search of Efficient Neural Networks for Private Inference

Secure Medical Image Analysis with CrypTFlow

Multi-Institution Encrypted Medical Imaging AI Validation Without Data Sharing

CrypTFlow: Secure TensorFlow Inference

Joint Linear and Nonlinear Computation across Functions for Efficient Privacy-Preserving Neural Network Inference

CryptoTrain: Fast Secure Training on Encrypted Dataset


Sample benchmark files for Hyperledger Caliper https://wiki.hyperledger.org/display/caliper

TradeChain: Decoupling Traceability and Identity in Blockchain enabled Supply Chains

Performance Overhead of Atomic Crosschain Transactions

QiOi: Performance Isolation for Hyperledger Fabric

An International Federal Hyperledger Fabric Verification Framework for Digital COVID-19 Vaccine Passport

A Journey Towards the Most Efficient State Database for Hyperledger Fabric

Improving Energy Efficiency of Permissioned Blockchains Using FPGAs

LLMChain: Blockchain-based Reputation System for Sharing and Evaluating
  Large Language Models

Layer 2 Atomic Cross-Blockchain Function Calls

Detecting and Preventing Credential Misuse in OTP-Based Two and Half Factor Authentication Toward Centralized Services Utilizing Blockchain-Based Identity Management


loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)

Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC

Advanced Bayesian Multilevel Modeling with the R Package brms

Using Stacking to Average Bayesian Predictive Distributions (with Discussion)

Pareto Smoothed Importance Sampling

blavaan: Bayesian structural equation models via parameter expansion

Bayesian Comparison of Latent Variable Models: Conditional Versus Marginal Likelihoods

Bayesian latent time joint mixed effect models for multicohort longitudinal data

Towards powerful experimental and statistical approaches to study intraindividual variability in labile traits

Analysing Standard Progressive Matrices (SPM-LS) with Bayesian Item Response Models

Widespread extinction debts and colonization credits in United States breeding bird communities


Framework for the reproducible processing of neuroimaging data with deep learning methods

Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder

Hippocampal‐amygdalo‐ventricular atrophy score: Alzheimer disease detection using normative and pathological lifespan models

Towards better Interpretable and Generalizable AD detection using Collective Artificial Intelligence

An overview of open source Deep Learning-based libraries for Neuroscience


Android Application Identifier for Packers, Protectors, Obfuscators and Oddities - PEiD for Android

Beyond the virus: a first look at coronavirus-themed Android malware

Beyond the Virus: A First Look at Coronavirus-themed Mobile Malware

A First Look at Android Applications in Google Play related to Covid-19

DroidPDF: The Obfuscation Resilient Packer Detection Framework for Android Apps

A Multi-Tier Security Analysis of Official Car Management Apps for Android

Empirical Security and Privacy Analysis of Mobile Symptom Checking Apps on Google Play

SECRYPT 2021: PROCEEDINGS OF THE 18TH INTERNATIONAL CONFERENCE ON SECURITY AND CRYPTOGRAPHY

FirmwareDroid: Security Analysis of the Android Firmware EcoSystem


:dragon: Compute and work with indices of effect size and standardized parameters

effectsize: Estimation of Effect Size Indices and Standardized Parameters

Soil Management Effects on Soil Water Erosion and Runoff in Central Syria—A Comparative Evaluation of General Linear Model and Random Forest Regression

Reactive, Agentic, Apathetic, or Challenged? Aging, Emotion, and Coping During the COVID-19 Pandemic

Plasma GFAP associates with secondary Alzheimer's pathology in Lewy body disease

A Model of Psychological Mechanisms of Inclusive Music-Making: Empowerment of Marginalized Young People

Adaptation and validation of two autism-related measures of skills and quality of life in Ethiopia

Autism : the international journal of research and practice

Effects of dietary fatty acids on the social life of male Guinea pigs from adolescence to adulthood

Age-related decline in cortical inhibitory tone strengthens motor memory

Pupillary Responses to Faces Are Modulated by Familiarity and Rewarding Context


GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

A unified catalog of 204,938 reference genomes from the human gut microbiome

New insights from uncultivated genomes of the global human gut microbiome

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

Large scale genome reconstructions illuminate Wolbachia evolution

A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli

Proceedings of the National Academy of Sciences of the United States of America

Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi


Easy-to-use glTF 2.0-compliant OpenGL renderer for visualization of 3D scenes.

Multiview Neural Surface Reconstruction by Disentangling Geometry and Appearance

Habitat 2.0: Training Home Assistants to Rearrange their Habitat

ACRONYM: A Large-Scale Grasp Dataset Based on Simulation

TACTO: A Fast, Flexible, and Open-Source Simulator for High-Resolution Vision-Based Tactile Sensors

Tactile Object Pose Estimation from the First Touch with Geometric Contact Rendering

ImFace: A Nonlinear 3D Morphable Face Model with Implicit Neural Representations

Let's Face It: Probabilistic Multi-modal Interlocutor-aware Generation of Facial Gestures in Dyadic Settings

Proceedings of the 20th ACM International Conference on Intelligent Virtual Agents

ShapeMap 3-D: Efficient shape mapping through dense touch and vision

Tac2Pose: Tactile Object Pose Estimation from the First Touch

NIFTY: Neural Object Interaction Fields for Guided Human Motion Synthesis


Inferring CNV from Single-Cell RNA-Seq

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer

Single-Cell Atlas of Lineage States, Tumor Microenvironment, and Subtype-Specific Expression Programs in Gastric Cancer

Tumour heterogeneity and intercellular networks of nasopharyngeal carcinoma at single cell resolution

T-cell dysfunction in the glioblastoma microenvironment is mediated by myeloid cells releasing interleukin-10

Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer

Single-cell multimodal glioma analyses identify epigenetic regulators of cellular plasticity and environmental stress response

Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells’ heterogeneity

Frequent aneuploidy in primary human T cells after CRISPR–Cas9 cleavage

Lineage recording in human cerebral organoids

Zenodo (CERN European Organization for Nuclear Research)


Scalable toolkit for efficient model alignment

Nemotron-4 15B Technical Report

HelpSteer2: Open-source dataset for training top-performing reward
  models

NeMo-Aligner: Scalable Toolkit for Efficient Model Alignment


Hyper-parameter optimization for sklearn

Benchmark and Survey of Automated Machine Learning Frameworks

Hyperopt-Sklearn: Automatic Hyperparameter Configuration for Scikit-Learn

Proceedings of the Python in Science Conferences

Bayesian Optimization for Categorical and Category-Specific Continuous Inputs

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry


rSFSW2: A R package to create soil water balance simulation experiment


AddressSanitizer, ThreadSanitizer, MemorySanitizer

NEUZZ: Efficient Fuzzing with Neural Program Smoothing

UNIFUZZ: A Holistic and Pragmatic Metrics-Driven Platform for Evaluating Fuzzers

Intel MPX Explained: An Empirical Study of Intel MPX and Software-based Bounds Checking Approaches

CUP: Comprehensive User-Space Protection for C/C++

PROCEEDINGS OF THE 2018 ACM ASIA CONFERENCE ON COMPUTER AND COMMUNICATIONS SECURITY (ASIACCS'18)

VPLanet: The Virtual Planet Simulator

Publications of the Astronomical Society of the Pacific

Sifu - a cybersecurity awareness platform with challenge assessment and intelligent coach

An Exploratory Analysis of Microcode as a Building Block for System Defenses

Ready, set, Go! Data-race detection and the Go language

Taming the War in Memory: A Resilient Mitigation Strategy Against Memory Safety Attacks in CPS

HyCoR: Fault-Tolerant Replicated Containers Based on Checkpoint and Replay


The Modular Ocean Model

A Comparative Study of Vertical Mixing Schemes in Modeling the Bay of Bengal Dynamics


Visualization and analysis software for Hi-C data -

Telomere-to-telomere assembly of a complete human X chromosome

The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000

Loop extrusion as a mechanism for formation of DNA damage repair foci

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

The genome of Medicago polymorpha provides insights into its edibility and nutritional value as a vegetable and forage legume

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies

The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum)

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case


TensorFlow Neural Machine Translation Tutorial

To prune, or not to prune: exploring the efficacy of pruning for model compression

QANet: Combining Local Convolution with Global Self-Attention for Reading Comprehension

Deep Learning Scaling is Predictable, Empirically

The Best of Both Worlds: Combining Recent Advances in Neural Machine Translation

Sequence-to-Sequence Prediction of Vehicle Trajectory via LSTM Encoder-Decoder Architecture

Differentiable Product Quantization for End-to-End Embedding Compression

Semi-Supervised Sequence Modeling with Cross-View Training

"Found in Translation": Predicting Outcomes of Complex Organic Chemistry Reactions using Neural Sequence-to-Sequence Models

Comparing Rewinding and Fine-tuning in Neural Network Pruning

emrQA: A Large Corpus for Question Answering on Electronic Medical Records


Deep Learning library for Lava

The Intel neuromorphic DNS challenge

Neuromorphic Bayesian Optimization in Lava


DreamCoder: Growing generalizable, interpretable knowledge with wake-sleep Bayesian program learning

Neural-Symbolic Recursive Machine for Systematic Generalization

Neural networks for abstraction and reasoning: Towards broad generalization in machines

Discovering Quantum Circuit Components with Program Synthesis

A HINT from Arithmetic: On Systematic Generalization of Perception, Syntax, and Semantics.


Open source pulsar search and analysis toolkit

A repeating fast radio burst

Fast radio bursts

An extreme magneto-ionic environment associated with the fast radio burst source FRB 121102

A repeating fast radio burst source localized to a nearby spiral galaxy

CHIME/FRB Discovery of Eight New Repeating Fast Radio Burst Sources

The Repeating Fast Radio Burst FRB 121102 as Seen on Milliarcsecond Angular Scales

The CHIME Fast Radio Burst Project: System Overview

FRB 121102 Bursts Show Complex Time-Frequency Structure

A repeating fast radio burst source in a globular cluster

A bimodal burst energy distribution of a repeating fast radio burst source


AQT: Accurate Quantized Training

Efficiently Scaling Transformer Inference

PokeBNN: A Binary Pursuit of Lightweight Accuracy

4-bit Conformer with Native Quantization Aware Training for Speech Recognition

Pareto-Optimal Quantized ResNet Is Mostly 4-bit

Binarized Neural Machine Translation


Examples and scripts using Blocks

Blocks and Fuel: Frameworks for deep learning

MED: The LMU System for the SIGMORPHON 2016 Shared Task on Morphological Reinflection

Special Interest Group on Computational Morphology and Phonology Workshop

Single-Model Encoder-Decoder with Explicit Morphological Representation for Reinflection

Neural Morphological Analysis: Encoding-Decoding Canonical Segments

Empirical Methods in Natural Language Processing

Improving Attention Modeling with Implicit Distortion and Fertility for Machine Translation

International Conference on Computational Linguistics

The RWTH Aachen Machine Translation Systems for IWSLT 2017

International Workshop on Spoken Language Translation

A Comparison of Feature-Based and Neural Scansion of Poetry

Recent Advances in Natural Language Processing


The main Embench repository

Comparative Analysis and Enhancement of CFG-based Hardware-Assisted CFI Schemes

Building Your Own Trusted Execution Environments Using FPGA

RVCoreP-32IM: An effective architecture to implement mul/div instructions for five stage RISC-V soft processors

From MMU to MPU: Adaptation of the Pip Kernel to Constrained Devices

Artificial Intelligence, Soft Computing and Applications

RVfplib: A Fast and Compact Open-Source Floating-Point Emulation Library for Tiny RISC-V Processors

One for All and All for One: GNN-based Control-Flow Attestation for Embedded Devices

MAFIA: Protecting the Microarchitecture of Embedded Systems Against Fault Injection Attacks

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems


Interactive assembly and analysis of RAD-seq data sets

Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra

Adaptation to hummingbird pollination is associated with reduced diversification in Penstemon

Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci

Phylogenomic analyses confirm a novel invasive North AmericanCorbicula(Bivalvia: Cyrenidae) lineage

Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae)

Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae)

Interspecific Genetic Differences and Historical Demography in South American Arowanas (Osteoglossiformes, Osteoglossidae, Osteoglossum)

Genomics-Based Phylogenetic and Population Genetic Analysis of Global Samples Confirms Halophila johnsonii Eiseman as Halophila ovalis (R.Br.) Hook.f.

DiscoSnp-RAD: de novo detection of small variants for population genomics

Inferring the Phylogeny and Divergence of Chinese Curcuma (Zingiberaceae) in the Hengduan Mountains of the Qinghai–Tibet Plateau by Reduced Representation Sequencing


Algorithms for outlier, adversarial and drift detection

Monitoring and explainability of models in production

Merlion: A Machine Learning Library for Time Series

Ergo, SMIRK is safe: a safety case for a machine learning component in a pedestrian automatic emergency brake system

Context-Aware Drift Detection

Model-agnostic and Scalable Counterfactual Explanations via Reinforcement Learning

Adversarial Detection and Correction by Matching Prediction Distributions

Learn to Adapt: Robust Drift Detection in Security Domain

Towards a low-code solution for monitoring machine learning model performance

Model Driven Engineering Languages and Systems

A monitoring framework for deployed machine learning models with supply chain examples

Comprehensible Counterfactual Explanation on Kolmogorov-Smirnov Test


QuickCheck inspired property-based testing for OCaml.

Automatic and scalable detection of logical errors in functional programming assignments

Proceedings of the ACM on Programming Languages

Random testing of a higher-order blockchain language (experience report)

Proceedings of the ACM on programming languages

Formalizing Date Arithmetic and Statically Detecting Ambiguities for the Law


Conditional GAN for generating synthetic tabular data.

Modeling Tabular data using Conditional GAN

TabDDPM: Modelling Tabular Data with Diffusion Models

Tabular GANs for uneven distribution

Mixed-Type Tabular Data Synthesis with Score-based Diffusion in Latent Space

Turning the Tables: Biased, Imbalanced, Dynamic Tabular Datasets for ML Evaluation

Towards Automated Imbalanced Learning with Deep Hierarchical Reinforcement Learning

Synthesising Multi-Modal Minority Samples for Tabular Data

Standardised Metrics and Methods for Synthetic Tabular Data Evaluation

Generative Trees: Adversarial and Copycat

ConvGeN: Convex space learning improves deep-generative oversampling for tabular imbalanced classification on smaller datasets


Neural Collaborative Filtering

Variational Autoencoders for Collaborative Filtering

Content-based recommendations with Poisson factorization

Scalable Recommendation with Poisson Factorization

Cornac: A Comparative Framework for Multimodal Recommender Systems

Bilateral Variational Autoencoder for Collaborative Filtering

MMRec: Simplifying Multimodal Recommendation

The Simpson's Paradox in the Offline Evaluation of Recommendation Systems

Explainable Recommendation with Comparative Constraints on Product Aspects

Multimodal Recommender Systems: A Survey


OpenTreeMap is a collaborative platform for crowdsourced tree inventory, ecosystem services calculations, urban forestry analysis, and community engagement.


A Python library for audio.

Going In Style: Audio Backdoors Through Stylistic Transformations

Modelling black-box audio effects with time-varying feature modulation

Towards robust music source separation on loud commercial music

Speech Signal Improvement Using Causal Generative Diffusion Models

Neural modeling of magnetic tape recorders

Modulation Extraction for LFO-driven Audio Effects

Giving Robots a Voice: Human-in-the-Loop Voice Creation and open-ended Labeling

Proceedings of the CHI Conference on Human Factors in Computing Systems

Leveraging Neural Representations for Audio Manipulation


AstroDrizzle for HST images.

Discovery and properties of ultra-high redshift galaxies (9 < z < 12) in the JWST ERO SMACS 0723 Field

Panic! at the Disks: First Rest-frame Optical Observations of Galaxy Structure at z > 3 with JWST in the SMACS 0723 Field

The JWST Hubble Sequence: The Rest-frame Optical Evolution of Galaxy Structure at 1.5 < z < 6.5

NGDEEP Epoch 1: The Faint End of the Luminosity Function at z ∼ 9–12 from Ultradeep JWST Imaging

EPOCHS VI: The Size and Shape Evolution of Galaxies since z ~ 8 with JWST Observations

Compact, bulge-dominated structures of spectroscopically confirmed quiescent galaxies at z ≈ 3

Monthly Notices of the Royal Astronomical Society

EPOCHS. II. The Ultraviolet Luminosity Function from 7.5 z 2 of Deep, Blank Fields from the PEARLS Survey and Public JWST Data

EPOCHS Paper II: The Ultraviolet Luminosity Function from $7.5

A JWST investigation into the bar fraction at redshifts 1 ≤ z ≤ 3

Weak gravitational lensing shear estimation with metacalibration for the Roman High-Latitude Imaging Survey


extract and tweak data from electrochemical tests of cells


Graph Signal Processing in Python

Signal Processing on Graphs: Extending High-Dimensional Data Analysis to Networks and Other Irregular Data Domains

Graph Signal Processing: Overview, Challenges and Applications

DeepSphere: Efficient spherical convolutional neural network with HEALPix sampling for cosmological applications

Semi-Implicit Graph Variational Auto-Encoders

DeepSphere: a graph-based spherical CNN

Understanding Pooling in Graph Neural Networks

Vector-Valued Graph Trend Filtering With Non-Convex Penalties

IEEE Transactions on Signal and Information Processing over Networks

Learning Graph Cellular Automata

DeepSphere: towards an equivariant graph-based spherical CNN

A computational framework for modeling complex sensor network data using graph signal processing and graph neural networks in structural health monitoring


Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Zenodo (CERN European Organization for Nuclear Research)

Emergence and expansion of SARS-CoV-2 B.1.526 after identification in New York

Rapid screening for SARS-CoV-2 variants of concern in clinical and environmental samples using nested RT-PCR assays targeting key mutations of the spike protein

SARS-CoV-2 Reinfection in a Healthcare Worker Despite the Presence of Detectable Neutralizing Antibodies

Rapid SARS-CoV-2 variant monitoring using PCR confirmed by whole genome sequencing in a high-volume diagnostic laboratory

Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation

Real-Time Genomic Surveillance for SARS-CoV-2 Variants of Concern, Uruguay

Evolving strategy for an evolving virus: Development of real-time PCR assays for detecting all SARS-CoV-2 variants of concern

Molecular Evolution and Epidemiological Characteristics of SARS COV-2 in (Northwestern) Poland

Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutations


AiiDA plugin of the high-performance density functional theory code JuKKR (www.judft.de) for high-throughput electronic structure calculations.

The AiiDA-KKR plugin and its application to high-throughput impurity embedding into a topological insulator

Interorbital Cooper pairing at finite energies in Rashba surface states

Atomic Diffusion-Induced Polarization and Superconductivity in Topological Insulator-Based Heterostructures

The JuDiT database of impurities embedded into a Topological Insulator


Reservoir computing utilities for scientific machine learning (SciML)

Data-driven prediction of a multi-scale Lorenz 96 chaotic system using deep learning methods: Reservoir computing, ANN, and RNN-LSTM

Reservoir Computing using Cellular Automata

ReservoirComputing.jl: An Efficient and Modular Library for Reservoir Computing Models

Measuring chaos in the Lorenz and Rössler models: Fidelity tests for reservoir computing


Language-Agnostic SEntence Representations

Massively Multilingual Sentence Embeddings for Zero-Shot Cross-Lingual Transfer and Beyond

No Language Left Behind: Scaling Human-Centered Machine Translation

WikiMatrix: Mining 135M Parallel Sentences in 1620 Language Pairs from Wikipedia

MTEB: Massive Text Embedding Benchmark

CCMatrix: Mining Billions of High-Quality Parallel Sentences on the WEB

Margin-based Parallel Corpus Mining with Multilingual Sentence Embeddings

CCAligned: A Massive Collection of Cross-Lingual Web-Document Pairs

Automatic Machine Translation Evaluation in Many Languages via Zero-Shot Paraphrasing

Deep Learning Models for Multilingual Hate Speech Detection

Overview of the 8th Workshop on Asian Translation


Home page of project "KB"

A Manually-Curated Dataset of Fixes to Vulnerabilities of Open-Source Software

Detection, assessment and mitigation of vulnerabilities in open source dependencies

A Survey on Machine Learning Techniques for Source Code Analysis

A comparative study of vulnerability reporting by software composition analysis tools

Proceedings of the 15th ACM / IEEE International Symposium on Empirical Software Engineering and Measurement (ESEM)

SeqTrans: Automatic Vulnerability Fix Via Sequence to Sequence Learning

A Survey on Automated Program Repair Techniques

Multi-Granularity Detector for Vulnerability Fixes

The Used, the Bloated, and the Vulnerable: Reducing the Attack Surface of an Industrial Application

Automated Mapping of Vulnerability Advisories onto their Fix Commits in Open Source Repositories

Detecting Security Fixes in Open-Source Repositories using Static Code Analyzers


Go implementation of the Ethereum protocol

A Survey on the Security of Blockchain Systems

A Survey on Consensus Mechanisms and Mining Strategy Management in Blockchain Networks

An overview on smart contracts: Challenges, advances and platforms

Smart Contract-Based Access Control for the Internet of Things

A Survey on Ethereum Systems Security: Vulnerabilities, Attacks, and Defenses

Decentralization in Bitcoin and Ethereum Networks

Decentralized Applications: The Blockchain-Empowered Software System

Dissecting Ponzi schemes on Ethereum: identification, analysis, and impact

Sereum: Protecting Existing Smart Contracts Against Re-Entrancy Attacks

SoK: Transparent Dishonesty: Front-Running Attacks on Blockchain


Label, clean and enrich text datasets with LLMs.

ChatGPT Outperforms Crowd-Workers for Text-Annotation Tasks

AnnoLLM: Making Large Language Models to Be Better Crowdsourced Annotators

MEGAnno+: A Human-LLM Collaborative Annotation System

Evaluation and Improvement of Fault Detection for Large Language Models

A multidisciplinary framework for deconstructing bots' pluripotency in
  dualistic antagonism


Machine learning, statistics, and data mining for astronomy and astrophysics

Astronomy in the Big Data Era

Precise radial velocities of giant stars IX. HD 59686 Ab: a massive circumstellar planet orbiting a giant star in a ~13.6 au eccentric binary system

Monte Carlo method for calculating oxygen abundances and their uncertainties from strong-line flux measurements


Deep learning toolkit-enabled VLSI placement

On Joint Learning for Solving Placement and Routing in Chip Design

MaskPlace: Fast Chip Placement via Reinforced Visual Representation Learning

Towards Machine Learning for Placement and Routing in Chip Design: a Methodological Overview


Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermal engineering plants such as power plants, district heating systems or heat pumps.


Multi-vector Simulation Tool assessing and optimizing Local Energy Systems (LES) for the E-LAND project


A library for doing homomorphic encryption operations on tensors

TenSEAL: A Library for Encrypted Tensor Operations Using Homomorphic Encryption

A Decentralized Identity-Based Blockchain Solution for Privacy-Preserving Licensing of Individual-Controlled Data to Prevent Unauthorized Secondary Data Usage

Syft 0.5: A Platform for Universally Deployable Structured Transparency

Privacy-Preserving Credit Card Fraud Detection using Homomorphic Encryption

XFL: A High Performace, Lightweighted Federated Learning Framework

Towards Privacy-Preserving, Real-Time and Lossless Feature Matching

Toward Lossless Homomorphic Encryption for Scientific Computation

Privacy-Preserving Chaotic Extreme Learning Machine with Fully Homomorphic Encryption

MPC-Mimicking Neural Network Based on Homomorphic Encryption


⚡ Energy consumption metrology agent. Let "scaph" dive and bring back the metrics that will help you make your systems and applications more sustainable !

EnergAt: Fine-Grained Energy Attribution for Multi-Tenancy

Proceedings of the 2nd Workshop on Sustainable Computer Systems

Potentials of Green Coding -- Findings and Recommendations for Industry,
  Education and Science -- Extended Paper


Make some beautiful corner plots

Deriving Physical Properties from Broadband Photometry with Prospector: Description of the Model and a Demonstration of its Accuracy Using 129 Galaxies in the Local Universe

Hierarchical analysis of gravitational-wave measurements of binary black hole spin–orbit misalignments

HEK. VI. On the Dearth of Galilean Analogs in Kepler, and the Exomoon Candidate Kepler-1625b I

The mass-sheet degeneracy and time-delay cosmography: analysis of the strong lens RXJ1131-1231

Journal of Cosmology and Astroparticle Physics

β PICTORIS' INNER DISK IN POLARIZED LIGHT AND NEW ORBITAL PARAMETERS FOR β PICTORIS b

THE DISTANCE DUALITY RELATION FROM STRONG GRAVITATIONAL LENSING

Extreme jet ejections from the black hole X-ray binary V404 Cygni

A comparison of exoplanet spectroscopic retrieval tools

Monthly notices of the Royal Astronomical Society

Improving time-delay cosmography with spatially resolved kinematics

Unveiling cloudy exoplanets: the influence of cloud model choices on retrieval solutions


libprotobuf-mutator bindings for Python using Atheris.

Deriving Semantics-Aware Fuzzers from Web API Schemas

cmaes : A Simple yet Practical Python Library for CMA-ES

Chain-of-Thought Prompting of Large Language Models for Discovering and
  Fixing Software Vulnerabilities

IvySyn: Automated Vulnerability Discovery in Deep Learning Frameworks

Sydr-Fuzz: Continuous Hybrid Fuzzing and Dynamic Analysis for Security Development Lifecycle


GUI for brightway2


Ground Control Station for Android Devices

Low Cost and Flexible UAV Deployment of Sensors

ChimpCheck: property-based randomized test generation for interactive apps

SIGPLAN symposium on New ideas, new paradigms, and reflections on programming and software

An Overview of the Drone Open-Source Ecosystem


Cyclops Tensor Framework: parallel arithmetic on multidimensional arrays

Red-blue pebbling revisited: near optimal parallel matrix-matrix multiplication

DISTAL: the distributed tensor algebra compiler

Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation

SpDISTAL: Compiling Distributed Sparse Tensor Computations

Deinsum: Practically I/O Optimal Multi-Linear Algebra


The generic genome-scale metabolic model of Homo sapiens

Genome-scale metabolic network reconstruction of model animals as a platform for translational research

Proceedings of the National Academy of Sciences of the United States of America

Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite-Protein Interaction Network

Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures

Constraint-Based Reconstruction and Analyses of Metabolic Models: Open-Source Python Tools and Applications to Cancer

Machine learning-guided evaluation of extraction and simulation methods for cancer patient-specific metabolic models

Computational and structural biotechnology journal

Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport

TumorMet: A repository of tumor metabolic networks derived from context-specific Genome-Scale Metabolic Models

Microbiome modeling: a beginner's guide


The Community Earth System Model

Understanding processes that control dust spatial distributions with global climate models and satellite observations

Assessment of Equilibrium Climate Sensitivity of the Community Earth System Model Version 2 Through Simulation of the Last Glacial Maximum

Differences in the quasi-biennial oscillation response to stratospheric aerosol modification depending on injection strategy and species

Dependence of strategic solar climate intervention on background scenario and model physics

Specified dynamics scheme impacts on wave-mean ﬂow dynamics, convection, and tracer transport in CESM2 (WACCM6)

Summer atmospheric circulation over Greenland in response to Arctic amplification and diminished spring snow cover

Interannual and Seasonal Drivers of Carbon Cycle Variability Represented by the Community Earth System Model (CESM2)

Comparison of Urban Air Quality Simulations During the KORUS‐AQ Campaign With Regionally Refined Versus Global Uniform Grids in the Multi‐Scale Infrastructure for Chemistry and Aerosols (MUSICA) Version 0

Journal of Advances in Modeling Earth Systems

Diffuse Radiation Forcing Constraints on Gross Primary Productivity and Global Terrestrial Evapotranspiration

Submesoscale Effects on Changes to Export Production Under Global Warming


A package for the sparse identification of nonlinear dynamical systems from data

Discovering governing equations from data by sparse identification of nonlinear dynamical systems

Sparse Identification of Nonlinear Dynamics with Control (SINDYc)

Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control

PySINDy: A Python package for the sparse identification of nonlinear dynamical systems from data

A unified sparse optimization framework to learn parsimonious physics-informed models from data

PySINDy: A comprehensive Python package for robust sparse system identification

Discovery of Physics From Data: Universal Laws and Discrepancies

PySINDy: A Python package for the Sparse Identification of Nonlinear Dynamics from Data

A Toolkit for Data-Driven Discovery of Governing Equations in High-Noise Regimes

Data-driven discovery and extrapolation of parameterized pattern-forming dynamics


Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Language models enable zero-shot prediction of the effects of mutations on protein function

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Evolutionary velocity with protein language models

The landscape of tolerated genetic variation in humans and primates

bioRxiv : the preprint server for biology

xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein

Structure-informed Language Models Are Protein Designers

Is Transfer Learning Necessary for Protein Landscape Prediction?

Updated benchmarking of variant effect predictors using deep mutational scanning

The geometry of hidden representations of large transformer models


AutoAWQ implements the AWQ algorithm for 4-bit quantization with a 2x speedup during inference. Documentation:

AWQ: Activation-aware Weight Quantization for LLM Compression and Acceleration

Demystifying the Compression of Mixture-of-Experts Through a Unified Framework

SmoothQuant+: Accurate and Efficient 4-bit Post-Training WeightQuantization for LLM

LimGen: Probing the LLMs for Generating Suggestive Limitations of
  Research Papers

A Comprehensive Evaluation of Quantized Instruction-Tuned Large Language
  Models: An Experimental Analysis up to 405B


Short-read sequencing tools

SeqPurge: highly-sensitive adapter trimming for paired-end NGS data

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma

Enrichment of SARM1 alleles encoding variants with constitutively hyperactive NADase in patients with ALS and other motor nerve disorders

Homozygous TBC1 domain-containing kinase (TBCK) mutation causes a novel lysosomal storage disease – a new type of neuronal ceroid lipofuscinosis (CLN15)?

A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer

Diagnostic genome sequencing improves diagnostic yield: a prospective single-centre study in 1000 patients with inherited eye diseases

Expanding the phenotypic spectrum of FINCA (fibrosis, neurodegeneration, and cerebral angiomatosis) syndrome beyond infancy

Detection of circulating cell-free HPV DNA of 13 HPV types for patients with cervical cancer as potential biomarker to monitor therapy response and to detect relapse

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance

A comprehensive quality control workflow for paired tumor-normal NGS experiments


Distributed Graph Database

The Train Benchmark: cross-technology performance evaluation of continuous model queries

Weaver: A High-Performance, Transactional Graph Database Based on Refinable Timestamps

An automatically created novel bug dataset and its validation in bug prediction

Fuzzy Random Walkers with Second Order Bounds: An Asymmetric Analysis

Study on Resource Efficiency of Distributed Graph Processing

Modeling Corruption in Eventually-Consistent Graph Databases

Relationships between design problem agglomerations and concerns having types and domains of software as transverse dimensions

Journal of the Brazilian Computer Society


moDel Agnostic Language for Exploration and eXplanation

One Explanation Does Not Fit All: A Toolkit and Taxonomy of AI Explainability Techniques

DALEX: explainers for complex predictive models

Explainable AI Methods - A Brief Overview

Shedding Light on Black Box Machine Learning Algorithms: Development of an Axiomatic Framework to Assess the Quality of Methods that Explain Individual Predictions

Massive Monte Carlo simulations-guided interpretable learning of two-dimensional Curie temperature


Awesome multilingual OCR toolkits based on PaddlePaddle (practical ultra lightweight OCR system, support 80+ languages recognition, provide data annotation and synthesis tools, support training and deployment among server, mobile, embedded and IoT devices)

Squeeze-and-Excitation Networks

Feature Pyramid Networks for Object Detection

MobileNetV2: Inverted Residuals and Linear Bottlenecks

Searching for MobileNetV3

Pruning Filters for Efficient ConvNets

An End-to-End Trainable Neural Network for Image-Based Sequence Recognition and Its Application to Scene Text Recognition

EAST: An Efficient and Accurate Scene Text Detector

Bag of Tricks for Image Classification with Convolutional Neural Networks

Synthetic Data for Text Localisation in Natural Images

Filter Pruning via Geometric Median for Deep Convolutional Neural Networks Acceleration


We unified the interfaces of instruction-tuning data (e.g., CoT data), multiple LLMs and parameter-efficient methods (e.g., lora, p-tuning) together for easy use. We welcome open-source enthusiasts to initiate any meaningful PR on this repo and integrate as many LLM related technologies as possible. 我们打造了方便研究人员上手和使用大模型等微调平台，我们欢迎开源爱好者发起任何有意义的pr！

LLaMA: Open and Efficient Foundation Language Models

LoRA: Low-Rank Adaptation of Large Language Models

Self-Instruct: Aligning Language Models with Self-Generated Instructions

Qwen Technical Report

Enhancing Chat Language Models by Scaling High-quality Instructional Conversations

Scaling Relationship on Learning Mathematical Reasoning with Large Language Models

Data-Juicer: A One-Stop Data Processing System for Large Language Models

An Empirical Study of Instruction-tuning Large Language Models in Chinese

Towards Better Evaluation of Instruction-Following: A Case-Study in Summarization

AlGhafa Evaluation Benchmark for Arabic Language Models


:robot: PaddleViT: State-of-the-art Visual Transformer and MLP Models for PaddlePaddle 2.0+

An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

Swin Transformer: Hierarchical Vision Transformer using Shifted Windows

End-to-End Object Detection with Transformers

Training data-efficient image transformers & distillation through attention

A ConvNet for the 2020s

Emerging Properties in Self-Supervised Vision Transformers

Rethinking Semantic Segmentation from a Sequence-to-Sequence Perspective with Transformers

SegFormer: Simple and Efficient Design for Semantic Segmentation with Transformers

MLP-Mixer: An all-MLP Architecture for Vision

CvT: Introducing Convolutions to Vision Transformers


Noto Emoji fonts

Im2Vec: Synthesizing Vector Graphics without Vector Supervision

ExtrudeNet: Unsupervised Inverse Sketch-and-Extrude for Shape Parsing

Variational Neural Cellular Automata

On the Use of Emojis in Mobile Authentication

Neural Cellular Automata Manifold

StarVector: Generating Scalable Vector Graphics Code from Images

Variationist: Exploring Multifaceted Variation and Bias in Written Language Data


Public malware techniques used in the wild: Virtual Machine, Emulation, Debuggers, Sandbox detection.

Decoding the Secrets of Machine Learning in Malware Classification: A Deep Dive into Datasets, Feature Extraction, and Model Performance

HyperDbg: Reinventing Hardware-Assisted Debugging (Extended Version)

Evasive Windows Malware: Impact on Antiviruses and Possible Countermeasures

PROCEEDINGS OF THE 17TH INTERNATIONAL JOINT CONFERENCE ON E-BUSINESS AND TELECOMMUNICATIONS (SECRYPT), VOL 1


UIUC/PPL version of ChaNGa

The formation of ultradiffuse galaxies in the RomulusC galaxy cluster simulation

The formation of isolated ultradiffuse galaxies in romulus25

A New Signal Model for Axion Cavity Searches from N-body Simulations

The AGORA High-resolution Galaxy Simulations Comparison Project. III. Cosmological Zoom-in Simulation of a Milky Way–mass Halo

THE EFFECTS OF ANGULAR MOMENTUM ON HALO PROFILES

Extracting Insights from Astrophysics Simulations

Simulating gravitational motion, gas dynamics, and structure in the cosmos

The Role of Mass and Environment on Satellite Distributions around Milky Way Analogs in the Romulus25 Simulation


Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors

Toward a Reinforcement Learning Environment Toolbox for Intelligent Electric Motor Control

IEEE transactions on neural networks and learning systems

Towards a Reinforcement Learning Environment Toolbox for Intelligent Electric Motor Control

gym-electric-motor (GEM): A Python toolbox for the simulation of electric drive systems

Meta-Reinforcement-Learning-Based Current Control of Permanent Magnet Synchronous Motor Drives for a Wide Range of Power Classes


Code for the paper Hybrid Spectrogram and Waveform Source Separation

Conv-TasNet: Surpassing Ideal Time–Frequency Magnitude Masking for Speech Separation

IEEE/ACM transactions on audio, speech, and language processing

Music Source Separation in the Waveform Domain

Hybrid Transformers for Music Source Separation

Seamless: Multilingual Expressive and Streaming Speech Translation

Demucs: Deep Extractor for Music Sources with extra unlabeled data remixed

CWS-PResUNet: Music Source Separation with Channel-wise Subband Phase-aware ResUNet

SingFake: Singing Voice Deepfake Detection

The Sound Demixing Challenge 2023 x2013 Music Demixing Track

Multi-Task Audio Source Separation


Eureka! is a data reduction and analysis pipeline intended for time-series observations with JWST.

Early Release Science of the exoplanet WASP-39b with JWST NIRISS

A reflective, metal-rich atmosphere for GJ 1214b from its JWST phase curve

Spectroscopic Time Series Performance of the Mid-infrared Instrument on the JWST

High atmospheric metal enrichment for a Saturn-mass planet

JWST COMPASS: A NIRSpec/G395H Transmission Spectrum of the Sub-Neptune
  TOI-836c

BOWIE-ALIGN: A JWST comparative survey of aligned vs misaligned hot Jupiters to test the dependence of atmospheric composition on migration history


Data augmentation for NLP

Character-level Convolutional Networks for Text Classification

SpecAugment: A Simple Data Augmentation Method for Automatic Speech Recognition

On the Opportunities and Risks of Foundation Models

SimCSE: Simple Contrastive Learning of Sentence Embeddings

EDA: Easy Data Augmentation Techniques for Boosting Performance on Text Classification Tasks

Adversarial Examples for Evaluating Reading Comprehension Systems

Deep Convolutional Neural Networks and Data Augmentation for Environmental Sound Classification

HotFlip: White-Box Adversarial Examples for Text Classification

Generating Natural Language Adversarial Examples

A Survey of Data Augmentation Approaches for NLP


Implementation of the LLaMA language model based on nanoGPT. Supports flash attention, Int8 and GPTQ 4bit quantization, LoRA and LLaMA-Adapter fine-tuning, pre-training. Apache 2.0-licensed.

LLaMA: Open and Efficient Foundation Language Models

LoRA: Low-Rank Adaptation of Large Language Models

LLaMA-Adapter: Efficient Fine-tuning of Language Models with Zero-init Attention

Knowledge Graph Prompting for Multi-Document Question Answering

LLM360: Towards Fully Transparent Open-Source LLMs

LLaMA-Reviewer: Advancing Code Review Automation with Large Language Models through Parameter-Efficient Fine-Tuning

Large Language Models are Efficient Learners of Noise-Robust Speech Recognition

Making Network Configuration Human Friendly

Defining and Detecting Vulnerability in Human Evaluation Guidelines: A Preliminary Study Towards Reliable NLG Evaluation

Adaptive Rank Selections for Low-Rank Approximation of Language Models

North American Chapter of the Association for Computational Linguistics


Veil 3.1.X (Check version info in Veil at runtime)

Practical Machine Learning for Cloud Intrusion Detection: Challenges and the Way Forward

Against The Achilles' Heel: A Survey on Red Teaming for Generative
  Models

Antiforensic techniques deployed by custom developed malware in evading anti-virus detection

Generative AI in Cybersecurity