A word alignment tool based on famous GIZA++, extended to support multi-threading, resume training and incremental training.


E(2)-Equivariant CNNs Library for Pytorch


Randomized Dimension Reduction Library


A frequency-domain dynamics model for floating wind turbines


Creative Commons Attribution 4.0 International

Force fields produced by the Open Force Field Initiative


EventStream is like functional programming meets IO


QUIC and HTTP/3 implementation in Python


Some notes on things I find interesting and important.


Python and JavaScript bindings for calling the Earth Engine API.


Spatial and spectral models for astrophysics


Rembg is a tool to remove images background


:stuck_out_tongue_closed_eyes: TensorFlowTTS: Real-Time State-of-the-art Speech Synthesis for Tensorflow 2 (supported including English, French, Korean, Chinese, German and Easy to adapt for other languages)


Espresso: A Fast End-to-End Neural Speech Recognition Toolkit


Download and process satellite imagery in Python using Sentinel Hub services.


Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data


Segmentation models with pretrained backbones. Keras and TensorFlow Keras.


Ethereum MultiSigWallet


Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.


Compact Data Structures Library


Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure


Automated Detection of COVID-19 Cases Using Deep Neural Networks with X-Ray Images


PyTorch implementation of Probabilistic End-to-end Noise Correction for Learning with Noisy Labels, CVPR 2019.


A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.


A python package for inferring psychological embeddings.


A Python3-base pipeline for translated circular RNA(circRNA) identification


Final Year Project for Speech Separation


JavaScript RISC-V ISA Simulator. Boots linux in a web-browser.


BiNE: Bipartite Network Embedding


DeepSlice: A Deep Learning Approach towards an Efficient and Reliable Network Slicing in 5G Networks


CCTyper: Automatic detection and subtyping of CRISPR-Cas operons


Short  Text Topic Modeling, JAVA


A C++ wrapper for a hungarian algorithm implementation


Multi-Hop Logical Reasoning in Knowledge Graphs


Learning Logic Rules for Document-Level Relation Extraction


Random Forests for Conditional Density Estimation


orthology assignment using phylogenetic and network analyses


Model soups: averaging weights of multiple fine-tuned models improves accuracy without increasing inference time


Data/Code Repository for https://api.semanticscholar.org/CorpusID:218470122


Molecular standardisation tool


Creative Commons Attribution Share Alike 4.0 International

A Span-Extraction Dataset for Chinese Machine Reading Comprehension  (CMRC 2018)


PointNetVLAD: Deep Point Cloud Based Retrieval for Large-Scale Place Recognition, CVPR 2018


Pytorch implementation of the method from the paper "Unsupervised Learning of Visual Representations by Solving Jigsaw Puzzles"


FastONN - Python based open-source GPU implementation for Operational Neural Networks


A fast python-based RM synthesis and RM CLEAN application and library


Curiosity-driven Exploration by Self-supervised Prediction


Code for the paper "Ordered Neurons: Integrating Tree Structures into Recurrent Neural Networks"


Invariant representation learning from imaging and spectral data


Software that can perform photorealistic style transfer without the need of any post-processing steps.


Tools and tutorials for the OpenMIC-2018 dataset.


Repository for Frequency Word List Generator and processed files


Automated Unittest Generation for Python


Eesti keele morfanalüsaator


A Massively Parallel FFT Library for CPU/GPU


Access data, statistics, and visualizations for New York's electricity grid.


A deep learning framework for symbolic optimization.


Code for phasing SVs with SNPs


An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)


Biclustering algorithm


Almost trivial distributed parallelization of stencil-based GPU and CPU applications on a regular staggered grid


package for interacting with fisheries databases at openfisheries.org


Package implementing various parametric and nonparametric methods for conditional density estimation


COMmon Bayesian Optimization


Compute SHAP values for your tree-based models using the TreeSHAP algorithm


Space-efficient pseudoalignment with a colored de Bruijn graph


MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies


Personal diploid genome creation and coordinate conversion


FinancialVision


Chromosome-level scaffolding using multiple references


A Comprehensive Reinforcement Learning Zoo for Simple Usage


Repository for the Georgetown University Multilayer Corpus (GUM)


AI to Combat Environmental Pollution - detecting plastic waste in the environment to combat environmental pollution and promote circular economy (Deep Learning, PyTorch)


Efficient Training (including pre-training and fine-tuning) for Big Models


RTE+RRTMGP is a set of codes for computing radiative fluxes in planetary atmospheres.


Repository for the open-source lethe CFD/DEM/CFD-DEM project


Distributed reliable key-value store for the most critical data of a distributed system


The official implementation of Autoregressive Image Generation using Residual Quantization (CVPR '22)


Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020


A PyTorch implementation of DenseNet.


MATLAB/Octave library for stochastic optimization algorithms: Version 1.0.20


Code for the paper "Generative Adversarial Imitation Learning"


Repository for XLM-T, a framework for evaluating multilingual language models on Twitter data


Mapping pipeline for data generated using Arima-HiC


Differential Algebra Computational Toolbox


Implementation of "Embedding Watermarks into Deep Neural Networks," in Proc. of ICMR'17.


Testing and Estimation of structural breaks in Stata


N-BEATS is a neural-network based model for univariate timeseries forecasting. N-BEATS is a ServiceNow Research project that was started at Element AI.


R script for the covid balf data analysis


SBX: Stable Baselines Jax (SB3 + Jax)


List of surgical tool datasets organised by task.


ACL 2021: Question Answering over Temporal Knowledge Graphs


PyTorch re-implementation of DeepLab v2 on COCO-Stuff / PASCAL VOC datasets


Frozen in Time: A Joint Video and Image Encoder for End-to-End Retrieval [ICCV'21]


EMNLP 2020: "Dialogue Response Ranking Training with Large-Scale Human Feedback Data"


Research Object manager command line tool(s) and web service


Geometry-Aware Learning of Maps for Camera Localization (CVPR2018)


Implementation of Phenaki Video, which uses Mask GIT to produce text guided videos of up to 2 minutes in length, in Pytorch


User Simulation for Task-Completion Dialogues


Data augmentation for NLP, presented at EMNLP 2019


MuCGEC中文纠错数据集及文本纠错SOTA模型开源；Code & Data for our NAACL 2022 Paper "MuCGEC: a Multi-Reference Multi-Source Evaluation Dataset for Chinese Grammatical Error Correction"


Pre-training Reusable Representations for Robotic Manipulation Using Diverse Human Video Data


This is the public repository for eigenvector-based SALSA features for polyphonic sound event localization and detection.


Learn interpretable computational phenotyping models from k-merized genomic data


A TensorFlow implementation of the Differentiable Neural Computer.


Code Release for MViTv2 on Image Recognition.


Get Deinked!!


Computational Analysis of Novel Drug Opportunities


Extension of the original word2vec using different architectures


[CVPR 2021] Pytorch implementation for TediGAN: Text-Guided Diverse Face Image Generation and Manipulation


A fork of the Systems Polynomial Optimization Toolbox.


Implementation of Positional Burrows-Wheeler Transform for genetic data


Hopfield Networks is All You Need


A tiny library for coding with large language models.


BIOMASS Product Algorithm Laboratory


A simulation tool to explore the spread of COVID-19 and the impact of prevention measures in small communities such as nursing homes, schools or universities via agent-based modeling (ABM).


Named Entity Recognition Tool


Innovative, efficient, and computational-graph-based finite element simulator for inverse modeling


PCAtools: everything Principal Components Analysis


Standalone password candidate generator using the PRINCE algorithm


Utilities and scripts for working with NEON data. Currently: an R package with functions to join (stack) the month-by-site files in downloaded NEON data, to convert data to geoCSV format, and to download data from the API.


Next generation sequencing reads de novo assembler.


WDL’s and Dockerfiles for assembly QC process


CRSLab is an open-source toolkit for building Conversational Recommender System (CRS).


AgML is a centralized framework for agricultural machine learning. AgML provides access to public agricultural datasets for common agricultural deep learning tasks, with standard benchmarks and pretrained models, as well the ability to generate synthetic data and annotations.


Access a database of word frequencies, in various natural languages.


Build a partitioned pangenome graph from microbial genomes


Code for "Prior Convictions: Black-Box Adversarial Attacks with Bandits and Priors"


MTR: Motion Transformer with Global Intention Localization and Local Movement Refinement, NeurIPS 2022.


A WaveRNN implementation


Maximum entropy modelling of species geographic distributions.


[ ICCV 2021 Oral ] Our method can estimate camera poses and neural radiance fields jointly when the cameras are initialized at random poses in complex scenarios (outside-in scenes, even with less texture or intense noise )


Hierarchy-Aware Global Model for Hierarchical Text Classification


Sign Language Transformers (CVPR'20)


HDGI code


Presenting Low-shot Visual Recognition by Shrinking and Hallucinating Features


Easy stellar SED fitting!


A corpus of Biomedical papers annotated with mentions of UMLS entities.


This is the reference implementation of commonly used coreference metrics.


Code for MOPO: Model-based Offline Policy Optimization


A two-stage RST discourse parser


A simple wrapper for the U.S. Energy Information Administration API


A SEmantic Modeling machIne to build Knowledge Graphs with Graph Neural Networks


Research code for pixel-based encoders of language (PIXEL)


Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.


Weak lensing measurement pipeline for wide area surveys


DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.


Multi-hop dense retrieval for question answering


Instruction Tuning with GPT-4


Dirichlet Process based methods for subclonal reconstruction of tumours


Tools for analyzing aerial point clouds of forest data.


The entmax mapping and its loss, a family of sparse softmax alternatives.


Official code for "Towards Photo-Realistic Virtual Try-On by Adaptively Generating↔Preserving Image Content"，CVPR‘20 https://arxiv.org/abs/2003.05863


Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving


:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data


Generates inputs for and runs the coupled groundwater-surface water model "GSFLOW"


C++ implementation of a fast hash map and hash set using robin hood hashing


Python module for stochastic residential occupancy behavior for both building and district energy simulations.


A Julia package for robust neural networks.


Mutation Identification Pipeline. Read the latest documentation:


A framework for high-performance medical image processing, neural network inference and visualization


Pathfinding and search testbed/visualization suite. Current code is in PDB-refactor branch.


Python for Materials Machine Learning, Materials Descriptors, Machine Learning Force Fields, Deep Learning, etc.


Silero VAD: pre-trained enterprise-grade Voice Activity Detector


This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.


Style Normalization and Restitution for Domain Generalization and Adaptation


Easily fine tune GPT-2 to fill in missing text


Neighbor2Neighbor: Self-Supervised Denoising from Single Noisy Images


syntactically controlled paraphrase networks


Inception Score for GANs in Pytorch


PacBio hybrid error correction through iterative short read consensus


Slimmable Networks, AutoSlim, and Beyond, ICLR 2019, and ICCV 2019


Train ImageNet *fast* in 500 lines of code with FFCV


A toolkit for non-parallel voice conversion based on vector-quantized variational autoencoder


An implementation of the BADGE batch active learning algorithm.


A PyTorch implementation of MobileNet V2 architecture and pretrained model.


Official pytorch repository for "Diffusion Posterior Sampling for General Noisy Inverse Problems"


Single-cell RNA-seq Gene Expression Recovery


Software implementing the Latent Causal Variable Model


Haste: a fast, simple, and open RNN library


FOCUS: Fine-mapping Of CaUsal gene Sets


NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data


Fader Networks: Manipulating Images by Sliding Attributes - NIPS 2017


Portable C implementation of Ed25519, a high-speed high-security public-key signature system.


ClimateSERV allows development practitioners, scientists/researchers, and government decision-makers to visualize and download historical rainfall data, vegetation condition data, and 180-day forecasts of rainfall and temperature to improve understanding of, and make improved decisions for, issues related to agriculture and water availability.


AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.


Squidwarc is a high fidelity, user scriptable, archival crawler that uses Chrome or Chromium with or without a head


Borg cluster traces from Google


Public Health England SNP calling pipeline.


Code for Concrete Dropout as presented in https://arxiv.org/abs/1705.07832


SISTR (Salmonella In Silico Typing Resource) command-line tool


Python library for modeling contrails and other aviation climate impacts


The official repository for the EuroCrops dataset.


Synchronized Batch Normalization implementation in PyTorch.


Julia package for ecosystem simulation


Code for the model presented in the paper: "code2seq: Generating Sequences from Structured Representations of Code"


PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics


Statistical comparison of two networks with respect to three invariance measures


Fetch NCDC ISD, TMY3, or CZ2010 weather data that corresponds to ZIP Code Tabulation Areas or Latitude/Longitude.


Proximal algorithms for nonsmooth optimization in Julia


Library for graphical models of decision making, based on pgmpy and networkx


A deep learning toolkit specialized for handwritten document analysis


reports on carbon removal projects and technologies


Tissue-specific variant effect predictions on splicing


Weak lensing fast simulations and analysis of blended objects.


A toolbox for integrated information theory.


Process consensus file for COG-UK data


Prosodic: a metrical-phonological parser, written in Python. For English and Finnish, with flexible language support.


GWAS Pipeline for H3Africa


A Python package to facilitate ocean model data analysis and visualization.


Analysis components from Oxford Nanopore Research


adaptive 1d numerical Gauss–Kronrod integration in Julia


BMXNet 2: An Open-Source Binary Neural Network Implementation Based on MXNet


InVivoTools a set of neurophysiology tools, forked from VanHooserTools, containing tools for visual stimulation and analysis of calcium imaging and extracellular electrophysiology data


a modeling environment tailored to parameter estimation in dynamical systems


Wave Energy Converter Simulator (WEC-Sim), an open-source code for simulating wave energy converters.


Apache Mesos


TensorFlow documentation


Automated Adversary Emulation Platform


MetaSRA: normalized sample-specific metadata for the Sequence Read Archive


Real-Time and Accurate Full-Body Multi-Person Pose Estimation&Tracking System


The project is an official implementation of our CVPR2020 paper "Attention Mechanism Exploits Temporal Contexts: Real-time 3D Human Pose Reconstruction"


GRU4Rec is the original Theano implementation of the algorithm in "Session-based Recommendations with Recurrent Neural Networks" paper, published at ICLR 2016 and its follow-up "Recurrent Neural Networks with Top-k Gains for Session-based Recommendations". The code is optimized for execution on the GPU.


PyTorch code for SpERT: Span-based Entity and Relation Transformer


Experiment code for "Deep Reinforcement Learning in a Handful of Trials using Probabilistic Dynamics Models"


chia pet analysis software


IGRINS pipeline package v2


[CVPR 2020 Workshop] A PyTorch GAN library that reproduces research results for popular GANs.


Self-supervised monocular depth estimation with a vision transformer


[IEEE TIP] "EnlightenGAN: Deep Light Enhancement without Paired Supervision" by Yifan Jiang, Xinyu Gong, Ding Liu, Yu Cheng, Chen Fang, Xiaohui Shen, Jianchao Yang, Pan Zhou, Zhangyang Wang


https://arxiv.org/abs/2104.02246  One Thing One Click (CVPR 2021)        https://arxiv.org/abs/2303.14727   One Thing One Click++ (Arxiv)


A service that lists all available and registered STAC catalogs and APIs.


blandr: a Bland-Altman Method Comparison package for R


English word segmentation, written in pure-Python, and based on a trillion-word corpus.


k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets


ICRA 2018 "Sparse-to-Dense: Depth Prediction from Sparse Depth Samples and a Single Image" (PyTorch Implementation)


Code of NIPS18 Paper: BRITS: Bidirectional Recurrent Imputation for Time Series


Tools to analyze Dip-C (or other 3C/Hi-C) data


OpenIE6 system


Kernel Density Estimation and (re)sampling


Udacity Self-Driving Car Engineer Nanodegree projects.


MFannot is a program for the annotation of mitochondrial and plastid genomes


Addition to multiple object tracker "Tracktor" from "Tracking without bells and whistles" paper.


Tools and libraries for processing Planet SkySat imagery, including camera model refinement, stereo reconstruction, and orthomosaic production


Sophos-ReversingLabs 20 million sample dataset


PyTorch Re-Implementation of "Generating Sentences from a Continuous Space" by Bowman et al 2015 https://arxiv.org/abs/1511.06349


spaCy module for linking text to Wikidata items


Available documentation and binaries


AMPtk: Amplicon ToolKit for NGS data (formally UFITS)


Indonesian stemmer. Python port of PHP Sastrawi project.


Implementation of Attention-based Deep Multiple Instance Learning in PyTorch


Microstructure Diffusion Toolbox


Unofficial PyTorch implementation of Google AI's VoiceFilter system


Forward-time simulation in Python using fwdpp


Natural language detection library for Go


Tools for Easier Analysis of Meteorological Fields


Galaxy tools and wrappers for sequence analysis


Real or Fake Text? Evaluation criteria for human-written and computer-generated text through the gamification of annotation. Published in EMNLP 2020.


Smatch tool: evaluation of AMR semantic structures


Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes


TensorFlow-Slim: A lightweight library for defining, training and evaluating complex models in TensorFlow


A Graph Neural Network Library in Jax


A fast MoE impl for PyTorch


Everything there is to know about Flashbots


Bluetooth experimentation framework for Broadcom and Cypress chips.


Julia package for automatically generating Bayesian inference algorithms through message passing on Forney-style factor graphs.


Explore correlations in R


an open directory of mobility feeds and operators — powers both Transitland v1 and v2


The official mirror of the V8 Git repository


Text classification using a convolutional neural network.


RISC-V CPU Core (RV32IM)


MetricGAN: Generative Adversarial Networks based Black-box Metric Scores Optimization for Speech Enhancement (ICML 2019, with Travel awards)


PyTorch Face Recognizer based on 'VGGFace2: A dataset for recognising faces across pose and age'


Defense-GAN: Protecting Classifiers Against Adversarial Attacks Using Generative Models (published in ICLR2018)


Value-Decomposition Multi-Agent Actor-Critics


EsViT: Efficient self-supervised Vision Transformers


PyTorch Implementation of MADDPG (Lowe et. al. 2017)


computational tools for the spectroscopic analysis of white dwarfs


Multivariate LSTM Fully Convolutional Networks for Time Series Classification


DenseASPP for Semantic Segmentation in Street Scenes


Deep-learning models of NTUA-SLP team  submitted in SemEval 2018 tasks 1, 2 and 3.


Lexicon-based Named Entity Recognition


[NeurIPS-2020] Self-paced Contrastive Learning with Hybrid Memory for Domain Adaptive Object Re-ID.


[ACL'19] [PyTorch] Multimodal Transformer


Pytorch implementation of JointBERT: "BERT for Joint Intent Classification and Slot Filling"


Official PyTorch implementation of Contrastive Learning of Musical Representations


Detecting sites of genomic enrichment


Code for RL experiments in "Model-Agnostic Meta-Learning for Fast Adaptation of Deep Networks"


3D Multi-Person Pose Estimation by Integrating Top-Down and Bottom-Up Networks


Python 3 support for the MS COCO caption evaluation tools


This repo contains the code for ACL2020 paper "Coreference Resolution as Query-based Span Prediction"


Ladder network is a deep learning algorithm that combines supervised and unsupervised learning


An efficient PyTorch library for deep generative modeling.


SW components and demos for visual kinship recognition. An emphasis is put on the FIW dataset-- data loaders, benchmarks, results in summary.


PyTorch implementation of soft actor critic


An extension to OpenRefine that enables graphical mapping of OpenRefine project data to an RDF skeleton and then exporting it in RDF format


Github repo for Jerasure Library - C Implementation of Reed-Solomon coding


OpenCCG library for parsing and realization with CCG


GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting.


Combining tree-boosting with Gaussian process and mixed effects models


Nidhugg is a bug-finding tool which targets bugs caused by concurrency and relaxed memory consistency in concurrent programs. It is particularly useful for programs written in C/pthreads. Currently Nidhugg supports the SC, TSO, PSO, POWER and ARM (partial) memory models.


Simple web service providing a word embedding model


Fast computation of the smallest enclosing ball of a point set, in low or moderately high dimensions.


Mathematica package for algebraic calculations in elementary particle physics.


A full Python Implementation of the ROUGE Metric (not a wrapper)


Korean BERT pre-trained cased (KoBERT)


Tiny Differentiable Simulator is a header-only C++ and CUDA physics library for reinforcement learning and robotics with zero dependencies.


statistical models of forest carbon potential and risks


TPRF: The Two-Particle Response Function tool box for TRIQS


A community-contributed tool box for managing, analyzing, and visualizing WRF Hydro (and NWM) input and output files in R.


A Julia/JuMP Package for Water Distribution Network Optimization


A large-scale dataset of both raw MRI measurements and clinical MRI images.


Python library for real space quantum Monte Carlo


Julia package for Gaussian quadrature


采用MegEngine实现的各种主流深度学习模型


Identify and quantify MHC eluted peptides from mass spectrometry raw data


Matlab routines to work with space data, particularly with MMS and Cluster/CAA data. Also some general plasma routines.


Structural Deep Clustering Network


Yu Tian et al. "CR-GAN: Learning Complete Representations for Multi-view Generation", IJCAI 2018


AttGAN PyTorch Arbitrary Facial Attribute Editing: Only Change What You Want


ESP32 Smart Solar Charger - the Open Solar Project


(CVPR2018) Adversarial Complementary Learning for Weakly Supervised Object Localization


An implementation of the Contrast Predictive Coding (CPC) method to train audio features in an unsupervised fashion.


PyTorch implementation of "Sub-Image Anomaly Detection with Deep Pyramid Correspondences"


Dataset of diseased plant leaf images and corresponding labels


Image Captioning Using Transformer


A simulator for single-cell expression data  guided by gene regulatory networks


Create regional association plots from GWAS or meta-analysis


A Dual Reinforcement Learning Framework for Unsupervised Text Style Transfer (IJCAI 2019)


Easy Bootstrap Resampling and Approximate Randomization for BLEU, METEOR, and TER using Multiple Optimizer Runs. This implements "Better Hypothesis Testing for Statistical Machine Translation: Controlling for Optimizer Instability" from ACL 2011.


BoNeSi - the DDoS Botnet Simulator


Implementation of "Learning Combinatorial Optimization Algorithms over Graphs"


Interactive Image Generation via Generative Adversarial Networks


Code for the paper "VisualBERT: A Simple and Performant Baseline for Vision and Language"


Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge


Official code and data repository for our EMNLP 2020 long paper "Reformulating Unsupervised Style Transfer as Paraphrase Generation" (https://arxiv.org/abs/2010.05700).


DeepLab resnet v2 model in pytorch


Deep Learning based cell composition analysis with Scaden.


LLM finetuned for medical question answering


Official code for "DPM-Solver: A Fast ODE Solver for Diffusion Probabilistic Model Sampling in Around 10 Steps" (Neurips 2022 Oral)


a tool for designing primer panels for multiplex PCR.


goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary


R interface to the National Hydrography Dataset :droplet:


Morphological analyzer and lemmatizer for Latin.


Repository for TweetEval


ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.


An experimentation and research platform to investigate the interaction of automated agents in an abstract simulated network environments.


Working repository for Causal Tree and extensions


Interactive Performance Evaluation Tools for Optimization Software


A random SQL query generator


GREAT Analysis - Functional Enrichment on Genomic Regions


fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome


On-chain atomic swaps for Decred and other cryptocurrencies.


The Chuffed CP solver


Efficient Augmented Reality for the Web - 60fps on mobile!


Simulation of spiking neural networks (SNNs) using PyTorch.


A simple, yet elegant, HTTP library.


Official code repository for GATK versions 4 and up


Structural Variant Identification Method using Long Reads


A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.


Turku Event Extraction System


X-VLM: Multi-Grained Vision Language Pre-Training (ICML 2022)


A Configurable Recommender Systems Simulation Platform


Code for paper "Vocabulary Learning via Optimal Transport for Neural Machine Translation"


automatic video description generation with GPU training


Ruleset covering algorithms for transparent machine learning


Official Pytorch Implementation of: "ImageNet-21K Pretraining for the Masses"(NeurIPS, 2021) paper


Variational Adversarial Active Learning (ICCV 2019)


Twitter Tools


[Inactive] High quality stemmer library for Indonesian Language (Bahasa)


An ultrafast optimal aligner for mapping large NGS data to large genome databases.


PyGCL: A PyTorch Library for Graph Contrastive Learning


semantic similarity framework for knowledge graph


A PyTorch impl of EfficientDet faithful to the original Google impl w/ ported weights


a data-driven method for determining stellar parameters and abundances from stellar spectra


The purpose of Raster Fairy is to transform any kind of 2D point cloud into a regular raster whilst trying to preserve the neighborhood relations that were present in the original cloud. A typical use case is if you have a similarity clustering of images and want to show the images in a regular table structure.


A general-purpose, deep learning-first library for constrained optimization in PyTorch


An Easy-to-use Knowledge Editing Framework for LLMs.


A robust streaming log template miner based on the Drain algorithm


Resilience Atlas - Evidence-based decision-making around resilience


InMAP reduced-form air quality model for fine particulate matter (PM2.5)


minorminer is a heuristic tool for minor embedding: given a minor and target graph, it tries to find a mapping that embeds the minor into the target.


Modular Deep Reinforcement Learning framework in PyTorch. Companion library of the book "Foundations of Deep Reinforcement Learning".


A Julia package for large-scale tensor computations, with a hint of category theory


An asynchronous programming facility for Scala


An implementation of model parallel GPT-2 and GPT-3-style models using the mesh-tensorflow library.


Library that attributes resource use, waste, emissions, and loss to economic sectors


Tools for ggplot2 scales


RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.


Code for Transformer Hawkes Process, ICML 2020.


MuKEA: Multimodal Knowledge Extraction and Accumulation for Knowledge-based Visual Question Answering


Semi-supervised learning with graph embeddings


Deep Learning to Improve Breast Cancer Detection on Screening Mammography


Source code and dataset for KDD 2020 paper "Controllable Multi-Interest Framework for Recommendation"


Code for the paper Fine-Tuning Language Models from Human Preferences


Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions


pytorch implementation for Contrastive Adaptation Network


Log-based Anomaly Detection with Deep Learning: How Far Are We? (ICSE 2022, Technical Track)


:package: Non-parametric Causal Effects Based on Modified Treatment Policies :crystal_ball:


Forecasting electric power load of Delhi using ARIMA, RNN, LSTM, and GRU models


Augmented Synthetic Control Method


PyTorch implementation of Soft Actor-Critic (SAC), Twin Delayed DDPG (TD3), Actor-Critic (AC/A2C), Proximal Policy Optimization (PPO), QT-Opt, PointNet..


The Microsoft Scalable Noisy Speech Dataset (MS-SNSD) is a noisy speech dataset that can scale to arbitrary sizes depending on the number of speakers, noise types, and Speech to Noise Ratio (SNR) levels desired.


Modules for processing extracellular electrophysiology data from Neuropixels probes


Gaussian mixtures and image processing implemented in python


Filter and prioritize fusion calls


Compare GAN code.


Python package for modeling structural color in colloidal systems


Rule-based facts extraction for Russian language


Multimodal-GPT


JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions


Python package for causal discovery based on LiNGAM.


Accurate Species TRee ALgorithm


Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.


Massive-Parallel Trajectory Calculations (MPTRAC) is a Lagrangian particle dispersion model for the analysis of atmospheric transport processes in the free troposphere and stratosphere.


icclim: Python library for climate indices and climate indicators calculation.


PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.


Transfer learning / domain adaptation / domain generalization / multi-task learning etc. Papers, codes, datasets, applications, tutorials.-迁移学习


Low-precision matrix multiplication


OpenDILab Decision AI Engine


HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.


Scripts and tutorials on how to assemble individual microbial genomes from metagenomes


Topic-Aware Convolutional Neural Networks for Extreme Summarization


Github Actions采集RSS, 打造无广告内容优质的头版头条超赞宝藏页


Factorization Machine models in PyTorch


Code for the paper "A Simple Unified Framework for Detecting Out-of-Distribution Samples and Adversarial Attacks".


Source Codes: Rumor Detection on Social Media with Bi-Directional Graph Convolutional Networks--AAAI 2020


Implementation of Super Resolution CNN in Keras.


FC-DenseNet in PyTorch for Semantic Segmentation


Haplotype phasing software


scripts for estimating bacteria replication rates based on population genome copy number variation


SpellGCN


OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.


dzetsaka : classification plugin for Qgis


Korean NLU Benchmark


A PyTorch Platform for Distributed RL


Recurrent Event Network: Autoregressive Structure Inference over Temporal Knowledge Graphs (EMNLP 2020)


Repository for Chemical Perception Sampling Tools


Antibiotic resistance prediction in minutes


Kernel Density Estimation in Python


AquaCrop-OSPy: Python implementation of AquaCrop-OS


A Python implementation of Deep Belief Networks built upon NumPy and TensorFlow with scikit-learn compatibility


ALiPy: Active Learning in Python is an active learning python toolbox, which allows users to conveniently evaluate, compare and analyze the performance of active learning methods.


An R package for water quality thresholds and index calculation for British Columbia


Hyperparameter optimization in Julia.


MQT DDSIM - A quantum circuit simulator based on decision diagrams written in C++


Code relative to "Reliable  evaluation of adversarial robustness with an ensemble of diverse parameter-free attacks"


tinycrypt is a library of cryptographic algorithms with a focus on small, simple implementation.


GFF and GTF file manipulation and interconversion


Imaging Biomarkers and Computer-Aided Diagnosis Laboratory


The Standard DAO Framework, including Whitepaper


R tools for Eurostat data


MILC collaboration code for lattice QCD calculations


Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.


(unofficial) Googletrans: Free and Unlimited Google translate API for Python. Translates totally free of charge.


Sequence Generation Model for Multi-label Classification (COLING 2018)


How Powerful are Graph Neural Networks?


The software called Fmask (Function of mask) is used for automated clouds, cloud shadows, and snow masking for Landsats 4-8 and Sentinel 2 images.


PyTorch Implementation of ProDiff (ACM-MM'22) with a Extremely-Fast diffusion speech synthesis pipeline


[CVPR 2021] Semi-Supervised Semantic Segmentation with Cross Pseudo Supervision


A bridge betwwen the ROS ecosystem and AI Habitat.


Domain adaptation made easy. Fully featured, modular, and customizable.


Ekphrasis is a text processing tool, geared towards text from social networks, such as Twitter or Facebook. Ekphrasis performs tokenization, word normalization, word segmentation (for splitting hashtags) and spell correction,  using word statistics from 2 big corpora (english Wikipedia, twitter - 330mil english tweets).


Julia implementation of MARGO, an idealized climate-economic modelling framework for Optimizing trade-offs between emissions Mitigation, Adaptation, carbon dioxide Removal, and solar Geoengineering.


A Python 3 package to efficiently compute non-Markovian open quantum systems.


PyMatching: A Python/C++ library for decoding quantum error correcting codes with minimum-weight perfect matching.


Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.


a free python grammar checker ✅


Open morphology for Finnish


auDeep is a Python toolkit for unsupervised feature learning with deep neural networks (DNNs)


fitlog是一款在深度学习训练中用于辅助用户记录日志和管理代码的工具


TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.


Jupyter notebooks for learning how to use SimpleITK


Empower Sequence Labeling with Task-Aware Language Model


InternGPT (iGPT) is an open source demo platform where you can easily showcase your AI models. Now it supports DragGAN, ChatGPT, ImageBind, multimodal chat like GPT-4, SAM, interactive image editing, etc. Try it at igpt.opengvlab.com (支持DragGAN、ChatGPT、ImageBind、SAM的在线Demo系统)


pure-Julia multidimensional h-adaptive integration


Efficient analysis of spatial biodiversity datasets for global portfolios


Foundation Architecture for (M)LLMs


An npm module for accessing the green web API, and estimating the carbon emissions from using digital services


emb6 is a scalable C-based 6LoWPAN stack for embedded devices


Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code


Beautiful Algorithms to Normalize Zillions of Astronomical Images


A system for quickly generating training data with weak supervision


Pax is a Jax-based machine learning framework for training large scale models. Pax allows for advanced and fully configurable experimentation and parallelization, and has demonstrated industry leading model flop utilization rates.


Ollie is a open information extractor that uses bootstrapped dependency paths.


Unofficial PyTorch Reimplementation of RandAugment.


TabLinker - Supervised Excel/CSV to RDF Converter


Generate an interactive dot plot from mummer or minimap alignments


Large datasets for conversational AI


Code for the paper "When to Trust Your Model: Model-Based Policy Optimization"


Automatically exported from code.google.com/p/cuda-convnet2


Deep InfoMax (DIM), or "Learning Deep Representations by Mutual Information Estimation and Maximization"


Small utilities for working with fastq sequence files.


Project page for End-to-end Recovery of Human Shape and Pose


ICASSP'22 Training Strategies for Improved Lip-Reading; ICASSP'21 Towards Practical Lipreading with Distilled and Efficient Models; ICASSP'20 Lipreading using Temporal Convolutional Networks


Spatial mapping of cell types by integration of transcriptomics data


A set of pipelines and routines for echelle spectrographs


This tool provides an efficient implementation of the continuous bag-of-words and skip-gram architectures for computing vector representations of words. These representations can be subsequently used in many natural language processing applications and for further research.


Ranger - a synergistic optimizer using RAdam (Rectified Adam), Gradient Centralization and LookAhead in one codebase


R interface for the World Bank climate data


Tool to extract indicators of compromise from security reports in PDF format


High Quality Monocular Depth Estimation via Transfer Learning


Repository containing experimentation platform on how to train, infer on wav2vec2 models.


Java API for Natural Language Generation. Originally developed by Ehud Reiter at the University of Aberdeen’s Department of Computing Science and co-founder of Arria NLG. This git repo is the official SimpleNLG version.


Open clone of OpenAI's unreleased WebText dataset scraper. This version uses pushshift.io files instead of the API for speed.


Systematic conservation prioritization in R


Hyperparameter optimization that enables researchers to experiment, visualize, and scale quickly.


An Open-source Toolkit for LLM Development


GNU Octave library for connectivity analysis in large fMRI datasets


MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.


Package to call the NLopt nonlinear-optimization library from the Julia language


Qkit framework


DeepHyper: Scalable Asynchronous Neural Architecture and Hyperparameter Search for Deep Neural Networks


MACS -- Model-based Analysis of ChIP-Seq


Reference implementation for DPO (Direct Preference Optimization)


a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results


Vision-and-Language Navigation in Continuous Environments using Habitat


DAGAN: Data Augmentation Generative Adversarial Networks


[NeurIPS 2020] MCUNet: Tiny Deep Learning on IoT Devices; [NeurIPS 2021] MCUNetV2: Memory-Efficient Patch-based Inference for Tiny Deep Learning


A fast and flexible simulation infrastructure for exploring general-purpose processing-in-memory (PIM) architectures. Ramulator-PIM combines a widely-used simulator for out-of-order and in-order processors (ZSim) with Ramulator, a DRAM simulator with memory models for DDRx, LPDDRx, GDDRx, WIOx, HBMx, and HMCx. Ramulator is described in the IEEE CAL 2015 paper by Kim et al. at https://people.inf.ethz.ch/omutlu/pub/ramulator_dram_simulator-ieee-cal15.pdf Ramulator-PIM is used in the DAC 2019 paper by Singh et al. at https://people.inf.ethz.ch/omutlu/pub/NAPEL-near-memory-computing-performance-prediction-via-ML_dac19.pdf


Splitting of sequence reads by internal adapter sequence search


DoubleML - Double Machine Learning in R


Coronavirus (COVID-19) UK Historical Data


This is the main repository of open-sourced speech technology by Huawei Noah's Ark Lab.


Learning human driver models from NGSIM data with imitation learning.


A fast and scalable C++ library for implicit-feedback matrix factorization models


Automatic Differentiation Library for Computational and Mathematical Engineering


NicheNet: predict active ligand-target links between interacting cells


A library for Partially Homomorphic Encryption in Python


Python library for direct access to ICOS time series data.


Flood Risk modelling toolbox for Canada


A battery pack simulation tool that uses the PyBaMM framework


Time series distances: Dynamic Time Warping (fast  DTW implementation in C)


FeatherCNN is a high performance inference engine for convolutional neural networks.


The Pharmacogenomic Clinical Annotation Tool


A Julia framework for invertible neural networks


A Neural Framework for MT Evaluation


An all-in-one toolkit for computer vision


OpenEmbedded/Yocto layer for RISC-V Architecture


RxJava – Reactive Extensions for the JVM – a library for composing asynchronous and event-based programs using observable sequences for the Java VM.


Bullet Physics SDK: real-time collision detection and multi-physics simulation for VR, games, visual effects, robotics, machine learning etc.


This project is a tool to build CheXNet-like models, written in Keras.


The integration of single cell rank-based gene set enrichment analysis


Suite of Predictive Controllers for Industrial Embedded Systems. A Matlab toolbox for automatic code generation of solvers for MPC controllers.


PSP-UFU (Power Systems Platform of Federal University of Uberlândia) is a cross-platform, multilingual, Free and Open-Source Software with advanced GUI features and CAD tools for electrical power system studies.


The codes of paper "Long Text Generation via Adversarial Training with Leaked Information"  on AAAI 2018.  Text generation using GAN and Hierarchical Reinforcement Learning.


Large-scale, Informative, and Diverse Multi-round Chat Data (and Models)


Toward Multimodal Image-to-Image Translation


Automated de novo assembly of whole chloroplast genomes.


High-Performance MQTT Server


DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.


:bullettrain_front: Fast orthogonal polynomial transforms :surfer:


R interface to torchvision


Public version of PolyChord: See polychord.co.uk for PolyChordPro


A Python Command Line Interface for classifying fire events from the Collection 6 MODIS Burned Area Product.


A random forest


Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)


XenonPy is a Python Software for Materials Informatics


Modern spell checking library - accurate, fast, multi-language


Automatic program repair system for Java based on dynamic analysis and code synthesis with SMT. Also contains the code of Dynamoth.


Python package for signal processing, with emphasis on iterative methods


UCLID5: formal modeling, verification, and synthesis of computational systems


Developer repository for the LATTE code


Post-quantum crypto library for the ARM Cortex-M4


Simons Stellarator Optimizer Code


The core OCaml system: compilers, runtime system, base libraries


Test-time Local Converter


This is an official implementation of CvT: Introducing Convolutions to Vision Transformers.


Versatile End-to-End Recommender System


RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s


Recurrent (conditional) generative adversarial networks for generating real-valued time series data.


SC-Depth (V1, V2, and V3) for Unsupervised Monocular Depth Estimation  Webpage:https://jiawangbian.github.io/sc_depth_pl/


Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.


Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.


Automatic fingering generator for piano scores


Lucid library adapted for PyTorch


Platform for direct visualization, analysis and reporting of soil organic carbon predictions and changes over time.


WaveNet vocoder


A complete pipeline for metagenomic analysis


libstempo — a Python wrapper for tempo2


Nextstrain build for mpox virus


Albacore is a professional quality suite of Rake tasks for building .NET or Mono based systems.


egg is a flexible, high-performance e-graph library


Practical volume computation and sampling in high dimensions


The prime repository for state-of-the-art Multilingual Question Answering research and development.


An open source, embedded, high performance g-code-parser and CNC milling controller written in optimized C that will run on a straight Arduino


Appraise evaluation system for manual evaluation of machine translation output


The official PyTorch implementation of the paper "Learning by Analogy: Reliable Supervision from Transformations for Unsupervised Optical Flow Estimation".


Designing a Practical Degradation Model for Deep Blind Image Super-Resolution (ICCV, 2021) (PyTorch) - We released the training code!


Tool for deep mutational scanning experiments.


Code and videos accompanying the paper "Flickering Adversarial Attacks against Video Recognition Networks"


Paint by Example: Exemplar-based Image Editing with Diffusion Models


Reinforcement Learning Testbed for Power Consumption Optimization using EnergyPlus


Astronomical Dust Extinction


An R package containing the functions for the Open Bodem Index (OBI)


ACOLITE: generic atmospheric correction module


R package for the analysis of massive SNP arrays.


Name Reaction Ontology


Axion field evolution around QCD


TextRank implementation for Python 3.


Gaussian Process package based on data augmentation, sparsity and natural gradients


Python API to access the Copernicus Climate Data Store (CDS)


A GPT-empowered penetration testing tool


CFE is a conceptual rainfall-runoff model with an implementation of the Basic Model Interface.


AI for tomography


This repository combines the code from and supersedes the prior existing Shared, Platform, Protocol-Adapter-OSLP, Protocol-Adapter-IEC61850, Protocol-Adapter-DLMS, PublicLightingDemoApp and Integration-Tests repositories. The old repositories have been kept online for now in readonly mode to preserve the historical information.


Security oriented software fuzzer. Supports evolutionary, feedback-driven fuzzing based on code coverage (SW and HW based)


ObsPy: A Python Toolbox for seismology/seismological observatories.


Code accompanying the paper "Better Exploration with Optimistic Actor Critic" (NeurIPS 2019)


KG-BERT: BERT for Knowledge Graph Completion


Programs for producing static and dynamic (runtime) call graphs for Java programs


Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7


Official implementation of the papers "GECToR – Grammatical Error Correction: Tag, Not Rewrite" (BEA-20) and "Text Simplification by Tagging" (BEA-21)


Global spatial predictions of soil properties and classes at 250 m resolution


Gpu Accelerated Library for Analysing Radio Interferometer Observations


A PyTorch implementation of OpenAI's finetuned transformer language model with a script to import the weights pre-trained by OpenAI


Unified-Modal Speech-Text Pre-Training for Spoken Language Processing


A fast and lightweight python-based CTC beam search decoder for speech recognition.


A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores


EasyTransfer is designed to make the development of transfer learning in NLP applications easier.


StyleGAN2 - Official TensorFlow Implementation


Binarized Neural Network (BNN) for pytorch


SEAL (learning from Subgraphs, Embeddings, and Attributes for Link prediction). "M. Zhang, Y. Chen, Link Prediction Based on Graph Neural Networks, NeurIPS 2018 spotlight".


LLVIP: A Visible-infrared Paired Dataset for Low-light Vision


Twitter stream + search API grabber


Package for interpreting scikit-learn's decision tree and random forest predictions.


CRyPTIC data processing pipelines


Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards


Posterior summarisation in Bayesian phylogenetics


Zennit is a high-level framework in Python using PyTorch for explaining/exploring neural networks using attribution methods like LRP.


Large language models (LLMs) made easy, EasyLM is a one stop solution for pre-training, finetuning, evaluating and serving LLMs in JAX/Flax.


Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments


pytorch-kaldi is a project for developing state-of-the-art DNN/RNN hybrid speech recognition systems. The DNN part is managed by pytorch, while feature extraction, label computation, and decoding are performed with the kaldi toolkit.


Tools to work with Allen Inst CCF data in matlab


A simple and extensible library to create Bayesian Neural Network layers on PyTorch.


A framework for performing optical propagation simulations, meant for high contrast imaging, in Python.


DSSAT Cropping System Model


NVIDIA Federated Learning Application Runtime Environment


Optical Flow Prediction with TensorFlow. Implements "PWC-Net: CNNs for Optical Flow Using Pyramid, Warping, and Cost Volume," by Deqing Sun et al. (CVPR 2018)


Repository for the CVPR19 oral paper "Domain Generalization by Solving Jigsaw Puzzles"


The Chargy E-Mobility Transparency Application for Windows, Mac OS X and Linux (based on Electron)


Data-driven wavefront-based PSF modelling framework.


Deep learning model for predicting environmental variables on river systems


Novelty-inclusive microbial community profiling of shotgun metagenomes


Merlion: A Machine Learning Framework for Time Series Intelligence


A Python library for the state-of-the-art Bayesian optimization algorithms, with the core implemented in C++.


The windpowerlib is a library to model the output of wind turbines and farms.


The Virtual Planet Simulator


Use MCMC to analyze districting plans and gerrymanders


Extremely fast non-cryptographic hash algorithm


Tool for drawing diagrams on a grid, combining grids of SVGs into a big SVG figure


This repository contains the code for our fast polygonal building extraction from overhead images pipeline.


Attention based model for learning to solve different routing problems


The official Pytorch implementation of OCNet series and SegFix.


Long Range Arena for Benchmarking Efficient Transformers


A distributed, fault-tolerant graph database


Wake word detection modeling toolkit for Firefox Voice, supporting open datasets like Speech Commands and Common Voice.


Jack the Reader


sktime companion package for deep learning based on TensorFlow


SLAM performance evaluation framework


Python code for Stellar Population Inference from Spectra and SEDs


Interpretable ML package  for concise, transparent, and accurate predictive modeling (sklearn-compatible).


Simple package for monitoring and control your NVIDIA Jetson [Orin, Xavier, Nano, TX] series


Development repository for sea-ice column physics


HiSim - House Infrastructure Simulator


Experimentation procedure for Iterative Optimization Heuristics


PyTorch implementation of AANets (CVPR 2021) and Mnemonics Training (CVPR 2020 Oral)


Implementation of PoseNet


Content-Aware Unsupervised Deep Homography Estimation


Generative adversarial networks integrating modules from FUNIT and SPADE for face-swapping.


This is an official implementation for "SimMIM: A Simple Framework for Masked Image Modeling".


Learning to Adapt Structured Output Space for Semantic Segmentation, CVPR 2018 (spotlight)


The Tensorflow, Keras implementation of U-net, V-net, U-net++, UNET 3+, Attention U-net, R2U-net, ResUnet-a, U^2-Net, TransUNET, and Swin-UNET with optional ImageNet-trained backbones.


release version


Pellet is an OWL 2 reasoner in Java; open source (AGPL) and commercially licensed, commercial support available.


LZFSE compression library and command line tool


Research Framework for Single and Multi-Players  Multi-Arms Bandits (MAB) Algorithms, implementing all the state-of-the-art algorithms for single-player (UCB, KL-UCB, Thompson...) and multi-player (MusicalChair, MEGA, rhoRand, MCTop/RandTopM etc).. Available on PyPI: https://pypi.org/project/SMPyBandits/ and documentation on


PyTorch implementation of Super SloMo by Jiang et al.


The Agile Numerical Galaxy Organisation System


Modular Agent Based Evolution Framework


Descartes supports developers to improve their test suites by reporting weak spots in covered code


The Harmonized Emissions Component (HEMCO), developed by the GEOS-Chem Support Team.


A full spaCy pipeline and models for scientific/biomedical documents.


Python Blob Detector and Source Finder


Aqualink.org Ocean Monitoring Application


GNU toolchain for RISC-V, including GCC


[CVPR 2022--Oral] Restormer: Efficient Transformer for High-Resolution Image Restoration. SOTA  for motion deblurring, image deraining, denoising (Gaussian/real data), and defocus deblurring.


Add bisenetv2.  My implementation of BiSeNet


Plug and Play Language Model implementation. Allows to steer topic and attributes of GPT-2 models.


A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods


Dataset distribution for Seurat


Open Bandit Pipeline: a python library for bandit algorithms and off-policy evaluation


Finds SNP sites from a multi-FASTA alignment file


Documentation on how to access and use the Quick, Draw! Dataset.


A set of extension codes, utilities, and scripts for the enterprise PTA analysis framework.


Materials science with Python at the atomic-scale


Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.


:snake: Complete C99 parser in pure Python


The Official PyTorch Implementation of "NVAE: A Deep Hierarchical Variational Autoencoder" (NeurIPS 2020 spotlight paper)


Basic implementations of standard cryptography algorithms, like AES and SHA-1.


reference-guided aligner for next-generation sequencing technologies


Fast expectation maximization for microbial source tracking


Taskonomy: Disentangling Task Transfer Learning [Best Paper, CVPR2018]


Convert face dataset to masked dataset


Simple baselines and RNNs for predicting human motion in tensorflow. Presented at CVPR 17.


Transit Least Squares: An optimized transit-fitting algorithm to search for periodic transits of small planets


The ideal tool for exploring global marine biogeochemical cycles.


FUNGuild: parsing OTUs into functional guilds


A pytorch implementation for paper 'Exploring Simple Siamese Representation Learning'


python partial dependence plot toolbox


Toolbox for testing if a probability distribution fits a power law


MetaDrive: Composing Diverse Scenarios for Generalizable Reinforcement Learning


A package for capturing and analyzing network flow data and intraflow data, for network research, forensics, and security monitoring.


Hologram processing and light scattering in python


PyTorch Extension Library of Optimized Graph Cluster Algorithms


Named Entity Recognition as Dependency Parsing


Dilated Convolution for Semantic Image Segmentation


The add-on "Carbonalyser" allows to visualize the electricity consumption and greenhouse gases (GHG) emissions that your Internet browsing leads to.


Single-Cell Genotyping Tool


High-performance NetFlow v5/v9 and IPFIX collector (RFC7011)


Toolkit of BDD100K Dataset for Heterogeneous Multitask Learning - CVPR 2020 Oral Paper


Julia implementation for various Frank-Wolfe and Conditional Gradient variants


A JuMP-based Nonlinear Integer Program Solver


Algebraic Multigrid Solvers in Python


AMReX-based structured wind solver


a signal-level demultiplexer for Oxford Nanopore reads


A Keras TensorFlow 2.0 implementation of BERT, ALBERT and adapter-BERT.


A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.


A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools


An automated RNA-seq pipeline using Nextflow


Electricity monitoring library - install in Arduino IDE's libraries folder then restart the IDE


This is an open source project (formerly named Listen, Attend and Spell - PyTorch Implementation) for end-to-end ASR implemented with Pytorch, the well known deep learning toolkit.


Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.


non-redundant, compressed, journalled, file-based storage for biological sequences


zk-SNARK library.


ProjectQ: An open source software framework for quantum computing


Development repository for the `ez` package for R


[ICLR 2020] Contrastive Representation Distillation (CRD), and benchmark of recent knowledge distillation methods


A Toolkit for Using EnergyPlus in R.


The RedPajama-Data repository contains code for preparing large datasets for training large language models.


A pytorch implementation of Paper "Improved Training of Wasserstein GANs"


Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.


annotate a VCF with other VCFs/BEDs/tabixed files


Unified Structure Generation for Universal Information Extraction


Tensorflow implementation for learning an image-to-image translation without input-output pairs. https://arxiv.org/pdf/1703.10593.pdf


Tools for biogas research in R: process biogas data and predict biogas production


A tensorflow implementation of the "Style Tokens: Unsupervised Style Modeling, Control and Transfer in End-to-End Speech Synthesis"


[CVPR 2020] CenterMask : Real-time Anchor-Free Instance Segmentation


Implementation of Sequence Generative Adversarial Nets with Policy Gradient


Use the HYSPLIT model from inside R and do more with it


A PyTorch library and evaluation platform for end-to-end compression research


Fast & scalable MCMC for all your exoplanet needs!


A benchmark library for Dynamic Algorithm Configuration.


Easy benchmarking of all publicly accessible implementations of convnets


Python framework for short-term ensemble prediction systems.


Program for determining types of files for Windows, Linux and MacOS.


Open Source Neural Machine Translation and (Large) Language Models in PyTorch


CVNets: A library for training computer vision networks


Interactive hydrodynamic solver for pipe and channel networks


Integrating learning and task planning for robots with Keras, including simulation, real robot, and multiple dataset support.


Repo for the R package coloc


Scenarios, tutorials and demos for Autonomous Driving


TextGAN is a PyTorch framework for Generative Adversarial Networks (GANs) based text generation models.


Natural Language Processing Tutorial for Deep Learning Researchers


DeepLab2 is a TensorFlow library for deep labeling, aiming to provide a unified and state-of-the-art TensorFlow codebase for dense pixel labeling tasks.


A list of all named GANs!


tools for adding mutations to existing .bam files, used for testing mutation callers


Analysis framework and collection of process-oriented diagnostics for weather and climate simulations


OpenAeroStruct is a lightweight tool that performs aerostructural optimization using OpenMDAO.


Hurricane Analysis and Forecast System


[ICLR 2023 Oral] Zero-Shot Image Restoration Using Denoising Diffusion Null-Space Model


Compact Language Detector 2


Open source person re-identification library in python


JRCLUST


Problem Agnostic Speech Encoder


OpenMMLab optical flow toolbox and benchmark


A deep matching model library for recommendations & advertising. It's easy to train models and to export representation vectors which can be used for ANN search.


Framework for the reproducible processing of neuroimaging data with deep learning methods


A tool for light curve extraction from the TESS FFIs.


UIUC/PPL version of ChaNGa


The Hector Simple Climate Model


Open source annotation tool for machine learning practitioners.


[ICLR'23] DiffuSeq: Sequence to Sequence Text Generation with Diffusion Models


Web application to manage plants


Allosaurus is a pretrained universal phone recognizer for more than 2000 languages


Python library to interface with CATMAID servers. Fully interoperable with navis.


The Numenta Anomaly Benchmark


A multi-scale, python-based library for the modelling of solar cells and semiconductor materials


Video and Image Analytics for Multiple Environments


Core repository for Sawtooth Distributed Ledger


sentence embedding by Smooth Inverse Frequency weighting scheme


Open source Li-ion data management and modelling software


Python wrapper for the simple climate model MAGICC


Official implementation of PVT series


MIT Cheetah I Implementation


Lasagne recipes: examples, IPython notebooks, ...


R package for MetaboAnalyst


Toolkit for Machine Learning, Natural Language Processing, and Text Generation, in TensorFlow.  This is part of the CASL project: http://casl-project.ai/


Ethereum peer-to-peer networking specifications


Fast Library for Approximate Nearest Neighbors


ilastik-shell, applets, and workflows to string them together.


Piotr's Image & Video Matlab Toolbox


Generate duplex/single consensus reads to reduce sequencing noises and remove duplications


PyTorch Implementation of DeepVO


Trefle is a botanical JSON REST API for plants species, allowing you to search and query over all the registered species, and build the next gardening apps and farming robots.


R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)


butteraugli estimates the psychovisual difference between two images


Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions


Separate repository for svSolver


Run the PACTA analysis on EQ & CB portfolios


netCDF Operators


TensorFlow for R


Variational Quantum Circuit Simulator for Quantum Computation Research


3D Boolean / CSG Library


A simple tool for labeling object bounding boxes in images


Custom Diffusion: Multi-Concept Customization of Text-to-Image Diffusion (CVPR 2023)


Python library to facilitate genome assembly, annotation, and comparative genomics


brozzler - distributed browser-based web crawler


Python library for supernova cosmology


Fast LOAM: Fast and Optimized Lidar Odometry And Mapping   for indoor/outdoor localization IROS 2021


A relation-aware semantic parsing model from English to SQL


The S-Space repsitory, from the AIrhead-Research group


Matching techniques for Observational Studies


:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2


An R package  making it easy to query, preview, download and preprocess multiple kinds of spatial data  via R. All beta.


An open source python library for scalable Bayesian optimisation.


Easily share permanent links to ChatGPT conversations with your friends


COIN-OR Linear Programming Solver


Scripts to download genomes from the NCBI FTP servers


Automatically Track Radiosonde Launches using RTLSDR


A massively-parallel, block-sparse tensor framework written in C++


A method for circular DNA detection based on probabilistic mapping of ultrashort reads


Code for the Interspeech 2021 paper "AST: Audio Spectrogram Transformer".


SOLECTRUS is an innovative photovoltaic dashboard that not only visualizes the energy yield and consumption of a PV system but also calculates the costs and savings.


AI Research Platform for Reinforcement Learning from Real Panoramic Images.


Acceleration package for neural networks on multi-core CPUs


Sentiment Analysis, Text Classification, Text Augmentation,  Text Adversarial defense, etc.;


PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.


loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)


Antimicrobial Resistance Identification By Assembly


Extensible, Efficient Quantum Algorithm Design for Humans.


Reference implementation and documentation of a LoRa network node.


A General-purpose Parallel and Heterogeneous Task Programming System


Trixi.jl: Adaptive high-order numerical simulations of conservation laws in Julia


Universal and Transferable Attacks on Aligned Language Models


A collection of work related to COVID-19


Python wrapper for the PubChem PUG REST API.


Python interface to the WebRTC Voice Activity Detector


A tool that allows to get UMI counts from a single cell protein assay


PyTorch implementation of convolutional neural networks-based text-to-speech synthesis models


Global Forest Carbon Database


Package for consistent reporting of relative free energy results


The Esri Geometry API for Java enables developers to write custom applications for analysis of spatial data.  This API is used in the Esri GIS Tools for Hadoop and other 3rd-party data processing solutions.


Template for the GFW Map Builder that is available through ArcGIS Online, as a stand-alone web application, & a library to build custom Forest Atlas web applications


DDSP: Differentiable Digital Signal Processing


Powerful, automated analysis and design of quantum microwave chips & devices [Energy-Participation Ratio and more]


Toolkit for creating, sharing and using natural language prompts.


A collection of original, innovative ideas and algorithms towards Advanced Literate Machinery. This project is maintained by the OCR Team in the Language Technology Lab, Alibaba DAMO Academy.


Pytorch implementation of Self-Attention Generative Adversarial Networks (SAGAN)


Temporal Segment Networks (TSN) in PyTorch


SPARQL for Tables: Turn CSV into RDF using SPARQL syntax


Official repository for the "Big Transfer (BiT): General Visual Representation Learning" paper.


Code for "Model-Agnostic Meta-Learning for Fast Adaptation of Deep Networks"


A drag-and-drop quantum circuit simulator that runs in your browser. A toy for exploring and understanding small quantum circuits.


The ARTIC field bioinformatics pipeline


Automatically create Faiss knn indices with the most optimal similarity search parameters.


GA4GH Variation Representation Python Implementation


IEA Task 43: pre-construction energy estimate data standard repository


An EPANET compatible python package to simulate and analyze water distribution networks under disaster scenarios.


node security platform command-line tool


AsciiDoc Source


Multiresolution Adaptive Numerical Environment for Scientific Simulation


Astronomy and astrophysics core library


TextBoxes: A Fast Text Detector with a Single Deep Neural Network


Bayesian inference in HSMMs and HMMs


End-to-end ASR/LM implementation with PyTorch


The HOL Light theorem prover


Underthesea - Vietnamese NLP Toolkit


The RMLMapper executes RML rules to generate high quality Linked Data from multiple originally (semi-)structured data sources


Synthetic data generators for tabular and time-series data


Advanced crypto library for the Go language


Pcap editing and replay tools for *NIX and Windows - Users please download source from


Facebook AI Performance Evaluation Platform


Data parallel C++ mathematical object library


ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型


Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper:  Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams.  Advances in Neural Information Processing Systems, 2012


A self-supervised learning framework for audio-visual speech


AutoVC: Zero-Shot Voice Style Transfer with Only Autoencoder Loss


Implementation of Graph Auto-Encoders in TensorFlow


Bidirectional LSTM-CRF and ELMo for Named-Entity Recognition, Part-of-Speech Tagging and so on.


G2P with Tensorflow


COVID-Net Open Source Initiative


IMPROVER is a library of algorithms for meteorological post-processing.


A scala implementation of the Lightning Network.


Graphs for Everyone


GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.


General tools for genomic analyses.


MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is a facility instrument designed for the 10.4m GTC telescope in La Palma (Spain).


Aave Protocol Version 1.0 - Decentralized Lending Pools


Versatile open-source tool for microbiome analysis


Natural Language Processors


NeuralProphet: A simple forecasting package


A Java API for high-throughput sequencing data (HTS) formats.


A Robust LiDAR-Inertial Odometry for Livox LiDAR


Nanopore data  assembler


An explicit Python PV system IV & PV curve trace calculator which can also calculate mismatch.


VADER Sentiment Analysis. VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifically attuned to sentiments expressed in social media, and works well on texts from other domains.


NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations


iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.


Bayesian multi-object tracking


Stanford ColBERT: state-of-the-art neural search (SIGIR'20, TACL'21, NeurIPS'21, NAACL'22, CIKM'22)


Vitis AI is Xilinx’s development stack for AI inference on Xilinx hardware platforms, including both edge devices and Alveo cards.


PixelNeRF Official Repository


PineAPPL is not an extension of APPLgrid


The PyTorch Implementation based on YOLOv4 of the paper: "Complex-YOLO: Real-time 3D Object Detection on Point Clouds"


High performance nearest neighbor data structures (KDTree and BallTree) and algorithms for Julia.


Scientific analysis of nanoscale materials imaging data


The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used. Online documentation available at:


End-to-end Neural Coreference Resolution


Open-Set Grounded Text-to-Image Generation


Transform ML models into a native code (Java, C, Python, Go, JavaScript, Visual Basic, C#, R, PowerShell, PHP, Dart, Haskell, Ruby, F#, Rust) with zero dependencies


This R package can be used to compile and evaluate Water Quality Portal (WQP) data for samples collected from surface water monitoring sites on streams and lakes. It can be used to create applications that support water quality programs and help states, tribes, and other stakeholders efficiently analyze the data.


CV32E40P is an in-order 4-stage RISC-V RV32IMFCXpulp CPU based on RI5CY from PULP-Platform


Inference code for LLaMA models


A Monte Carlo ray tracer for the optical simulation of solar concentrating systems


Precision HLA typing from next-generation sequencing data


A python binding for crfsuite


A toolbox of vision models and algorithms based on MindSpore


Waymo Open Dataset


Code for ALBEF: a new vision-language pre-training method


Enrico helps you with your Fermi data analysis


eXtensible Neural Machine Translation


StarCraft II Learning Environment


An open-source HEVC encoder


The easiest way to use deep metric learning in your application. Modular, flexible, and extensible. Written in PyTorch.


TextAttack   is a Python framework for adversarial attacks, data augmentation, and model training in NLP https://textattack.readthedocs.io/en/master/


C library for prototyping and experimenting with quantum-resistant cryptography


Climate aware CMS breaking web apps free from carbon emissions.


Monero: the secure, private, untraceable cryptocurrency


semi supervised guided topic model with custom guidedLDA


Oil Production Greenhouse Gas Emissions Estimator


Official Implementation for "StyleCLIP: Text-Driven Manipulation of StyleGAN Imagery" (ICCV 2021 Oral)


Package for Simulation, Tomography and Analysis of Quantum Computers


Application and Python module for average nucleotide identity analyses of microbes.


PYNIDM: a Python NIDM library and tools


PV Analysis Tools in Python


An implementation of Scalable service-Oriented MiddlewarE over IP


Key/Value Datastore for Persistent Memory


Idealized GCM from the University of Exeter


Python implementation of the Open Charge Point Protocol (OCPP).


[ICLR 2023 Spotlight] Vision Transformer Adapter for Dense Predictions


Data-Centric FinGPT.  Open-source for open finance!  Revolutionize     We release the trained model on HuggingFace.


:bar_chart: Benchmark multiple object trackers (MOT) in Python


ARX is a comprehensive open source data anonymization tool aiming to provide scalability and usability. It supports various anonymization techniques, methods for analyzing data quality and re-identification risks and it supports well-known privacy models, such as k-anonymity, l-diversity, t-closeness and differential privacy.


Orocos Kinematics and Dynamics C++ library


A new Categories library for Agda


Federated Deep Learning in PaddlePaddle


Paparazzi is a free and open-source hardware and software project for unmanned (air) vehicles. This is the main software repository.


Official Tensorflow implementation of U-GAT-IT: Unsupervised Generative Attentional Networks with Adaptive Layer-Instance Normalization for Image-to-Image Translation (ICLR 2020)


PyTorch implementation of MoCo: https://arxiv.org/abs/1911.05722


[ICCV 2021 Oral] PoinTr: Diverse Point Cloud Completion with Geometry-Aware Transformers


Interpretability and explainability of data and machine learning models


Randomized testing for Go


OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)


OpenClimateGIS is a set of geoprocessing and calculation tools for CF-compliant climate datasets.


Unsupervised single image depth prediction with CNNs


A PyTorch implementation of "TextFuseNet: Scene Text Detection with Richer Fused Features".


A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning


A scikit-learn compatible neural network library that wraps PyTorch


TEASER - Tool for Energy Analysis and Simulation for Efficient Retrofit


Receptive Field Block Net for Accurate and Fast Object Detection, ECCV 2018


Goodman Data Reduction Pipeline


Official implementations of PSENet, PAN and PAN++.


Arduino library for communicating with XBee radios in API mode


A collection of fuzzers in a harness for testing the SpiderMonkey JavaScript engine.


SMOKE: Single-Stage Monocular 3D Object Detection via Keypoint Estimation


[Official Implementation] mPLUG-Owl & mPLUG-Owl2: Alibaba MLLM Family.


Data generation and submission scripts for the QCArchive ecosystem.


Mellotron: a multispeaker voice synthesis model based on Tacotron 2 GST that can make a voice emote and sing without emotive or singing training data


Fast, sensitive and accurate integration of single-cell data with Harmony


Cutadapt removes adapter sequences from sequencing reads


ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis.


Metasploitable3 is a VM that is built from the ground up with a large amount of security vulnerabilities.


Sloc, Cloc and Code: scc is a very fast accurate code counter with complexity calculations and COCOMO estimates written in pure Go


An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)


A BERT model for scientific text.


pycallgraph is a Python module that creates call graphs for Python programs.


FORCE11 Software Citation Implementation Working Group


Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool


An API standard for single-agent reinforcement learning environments, with popular reference environments and related utilities (formerly Gym)


Python Package for Airborne RGB machine learning


Fast and Easy Infinite Neural Networks in Python


DBCSR: Distributed Block Compressed Sparse Row matrix library


OpenMDAO repository.


Cycle oriented CartoCSS style.


A data generation pipeline for creating semi-realistic synthetic multi-object videos with rich annotations such as instance segmentation masks, depth maps, and optical flow.


Tensor Network Python (TeNPy)


Jupyter metapackage for installation, docs and chat


Code for "Social GAN: Socially Acceptable Trajectories with Generative Adversarial Networks", Gupta et al, CVPR 2018


Point-NeRF: Point-based Neural Radiance Fields


Source code for the LabelMe annotation tool.


A Heterogeneous Benchmark for Information Retrieval. Easy to use, evaluate your models across 15+ diverse IR datasets.


A graphical processor simulator and assembly editor for the RISC-V ISA


Monte Carlo Simulation propagating charged Leptons through Media as C++ Library


Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)


Stanford DSPy: The framework for programming—not prompting—foundation models


R package for analysis and visualisation of biological signals in weather radar data


TensorLy: Tensor Learning in Python.


Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and relative code.


Two-Stream Adaptive Graph Convolutional Networks for Skeleton-Based Action Recognition in CVPR19


TensorFlow-based implementation of "ICNet for Real-Time Semantic Segmentation on High-Resolution Images".


Visual tracking library based on PyTorch.


API & Webapp to answer questions about COVID-19. Using NLP (Question Answering) and trusted data sources.


ChainerRL is a deep reinforcement learning library built on top of Chainer.


A clean implementation based on AlphaZero for any game in any framework + tutorial + Othello/Gobang/TicTacToe/Connect4 and more


Open Location Code is a library to generate short codes, called "plus codes", that can be used as digital addresses where street addresses don't exist.


Google Play Unofficial Python API - This project was a PoC and is not maintained anymore. Please feel free to fork it and improve it in any way.


Toy Python implementation of http://www-nlp.stanford.edu/projects/glove/


Chinese-Vicuna: A Chinese Instruction-following LLaMA-based Model —— 一个中文低资源的llama+lora方案，结构参考alpaca


american fuzzy lop - a security-oriented fuzzer


Graph Neural Networks with Keras and Tensorflow 2.


Pyroomacoustics is a package for audio signal processing for indoor applications. It was developed as a fast prototyping platform for beamforming algorithms in indoor scenarios.


The agda-unimath library


Open source eye tracking


StarGAN - Official PyTorch Implementation (CVPR 2018)


The approximate regex matching library and agrep command line tool.


web-based analysis tool for rare disease genomics


Ontop is a platform to query relational databases as Virtual RDF Knowledge Graphs using SPARQL


Wild Me's first product, Wildbook supports researchers by allowing collaboration across the globe and automation of photo ID matching


set of tools for continuum fitting, correlation function calculation, cosmological fits...


The official pytorch implementation of our paper "Is Space-Time Attention All You Need for Video Understanding?"


spatially-resolved ESM-specific multi-scenario initial-condition ensemble emulator


MASS: Masked Sequence to Sequence Pre-training for Language Generation


The implementation of DeBERTa


A One-Click System for Analyzing Loop-Resolution Hi-C Experiments


Tools for handling Unique Molecular Identifiers in NGS data sets


Toolset for SV simulation, comparison and filtering


A machine learning package for streaming data in Python. The other ancestor of River.


LLM training code for MosaicML foundation models


Training PyTorch models with differential privacy


ArrayFire: a general purpose GPU library.


Extract Keywords from sentence or Replace keywords in sentences.


Bayes Net Toolbox for Matlab


LoFreq Star: Sensitive variant calling from sequencing data


Source files for SiFive's Freedom platforms


A repository of LIVE malwares for your own joy and pleasure. theZoo is a project created to make the possibility of malware analysis open and available to the public.


The mission of Project Drawdown is to help the world reach “Drawdown”— the point in the future when levels of greenhouse gases in the atmosphere stop climbing and start to steadily decline, thereby stopping catastrophic climate change — as quickly, safely, and equitably as possible.


Building Optimization Performance Tests


The Topics API


:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.


Unsupervised Data Augmentation (UDA)


ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data


The General NOAA Operational Modeling Environment


A Python nearest neighbor descent for approximate nearest neighbors


Bayesian optimization in PyTorch


NEURON Simulator


WannierTools: An open-source software package for novel topological materials. Full documentation:


Deep recommender models using PyTorch.


PDBFixer fixes problems in PDB files


Quantum hardware module and drivers for Qibo.


Hyperledger Aries is infrastructure for blockchain-rooted, peer-to-peer interactions


This is an official implementation of our CVPR 2020 paper "HigherHRNet: Scale-Aware Representation Learning for Bottom-Up Human Pose Estimation" (https://arxiv.org/abs/1908.10357)


An Arduino library to give environmental sensors a common interface of functions for use with Arduino-framework dataloggers, such as the EnviroDIY Mayfly.


memcached development tree


Bi-directional Attention Flow (BiDAF) network is a multi-stage hierarchical process that represents context at different levels of granularity and uses a bi-directional attention flow mechanism to achieve a query-aware context representation without early summarization.


Python package for automated analysis and management of gridded climate data


Automated 3D cell detection and registration of whole-brain images


Python library for interactive topic model visualization. Port of the R LDAvis package.


Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.


code for Holistically-Nested Edge Detection


Pilon is an automated genome assembly improvement and variant detection tool


Simple and Distributed Machine Learning


中文文本分类，TextCNN，TextRNN，FastText，TextRCNN，BiLSTM_Attention，DPCNN，Transformer，基于pytorch，开箱即用。


Interactive quality assessment of genome assemblies


Automatically exported from code.google.com/p/figtree


A PyTorch implementation of the Transformer model in "Attention is All You Need".


Parsing ELF and DWARF in Python


This book will be an undergraduate textbook written in the univalent style, taking advantage of the presence of symmetry in the logic at an early stage.


A Python Package for Protein Dynamics Analysis


A tool for exploring very large trees in the browser


PyTorch based Probabilistic Time Series forecasting framework based on GluonTS backend


Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"


A cool place to store your Hi-C


A lightweight parameter server interface


The Browser Exploitation Framework Project


GTP engine and self-play learning in Go


Circular and Rectangular Manhattan Plot


Trinotate source code


A CF-compliant Earth Science data analysis library


PyTorch implementation of the U-Net for image semantic segmentation with high quality images


NUOPC Community Mediator for Earth Prediction Systems


N-D labeled arrays and datasets in Python


Google DeepMind's software stack for physics-based simulation and Reinforcement Learning environments, using MuJoCo.


Public development project of the LAMMPS MD software package


Network Analysis in Python


Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.


depthmapX is a multi-platform Spatial Network Analysis Software


PDF to XML ALTO file converter


qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.


A repo for distributed training of language models with Reinforcement Learning via Human Feedback (RLHF)


Easily train or fine-tune SOTA computer vision models with one open source training library. The home of Yolo-NAS.


Collective communications library with various primitives for multi-machine training.


A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.


[ECCV 2018] CCPD: a diverse and well-annotated dataset for license plate detection and recognition


Implementation for <SphereFace: Deep Hypersphere Embedding for Face Recognition> in CVPR'17.


A hyperparameter optimization framework


Code coverage for Solidity smart-contracts


A large scale non-linear optimization library


A large-scale 7B pretraining language model developed by BaiChuan-Inc.


CHARMM and AMBER forcefields for OpenMM (with small molecule support)


Creates spectrum generators for supersymmetric and non-supersymmetric models


A high performance implementation of HDBSCAN clustering.


SMC++ infers population history from whole-genome sequence data.


customizable pipeline to identify viral sequences from (meta)genomic data


A platform for impacted communities to understand their local air quality and advocate for environmental justice.


Efficient few-shot learning with Sentence Transformers


Fengshenbang-LM(封神榜大模型)是IDEA研究院认知计算与自然语言研究中心主导的大模型开源体系，成为中文AIGC和认知智能的基础设施。


Home of StarCoder: fine-tuning & inference!


Useful extra functionality for TensorFlow 2.x maintained by SIG-addons


A Fast Implementation of Random Forests


Brain Imaging Analysis Kit


The Stan transpiler (from Stan to C++ and beyond).


Deep Hough Voting for 3D Object Detection in Point Clouds


A Neo4j backed ontology store


"Das U-Boot" Source Tree


Main operatorfabric program


Public repository of the Cosmic Linear Anisotropy Solving System (master for the most recent version of the standard code; GW_CLASS to include Cosmic Gravitational Wave Background anisotropies; classnet branch for acceleration with neutral networks; ExoCLASS branch for exotic energy injection; class_matter branch for FFTlog)


Distribution package for the Prgressive Cactus multiple genome aligner.  Dependencies are linked as submodules


Semantic Parser with Execution


Functional tensors for probabilistic programming


PyTorch CTC Decoder bindings


Workflow Description Language - Specification and Implementations


Embeddable genomic visualization component based on the Integrative Genomics Viewer


The development repository for the deal.II finite element library.


Paddle Graph Learning (PGL) is an efficient and flexible graph learning framework based on PaddlePaddle


Capstone disassembly/disassembler framework for ARM, ARM64 (ARMv8), BPF, Ethereum VM, M68K, M680X, Mips, MOS65XX, PPC, RISC-V(rv32G/rv64G), SH, Sparc, SystemZ, TMS320C64X, TriCore, Webassembly, XCore and X86.


PyTorch ,ONNX and TensorRT implementation of YOLOv4


The pytest framework makes it easy to write small tests, yet scales to support complex functional testing


The Python package installer


The Python Spectroscopic Data Reduction Pipeline


:mag: LLM orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.


Free to use online tool for labelling photos. https://makesense.ai


Android Application Identifier for Packers, Protectors, Obfuscators and Oddities - PEiD for Android


Specifications and tools for 360º video and spatial audio.


MONAI Label is an intelligent open source image labeling and learning tool.


PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNet-V3/V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more


The USRP™ Hardware Driver Repository


ECCV18 Workshops - Enhanced SRGAN. Champion PIRM Challenge on Perceptual Super-Resolution. The training codes are in BasicSR.


Translate manga/image 一键翻译各类图片内文字 https://cotrans.touhou.ai/


MAVLink to ROS gateway with proxy for Ground Control Station


Simulate Functional Mockup Units (FMUs) in Python


A fast radio interferometric calibration suite.


A modular active learning framework for Python


Efficient phylogenomic software by maximum likelihood


The Learning Interpretability Tool: Interactively analyze ML models to understand their behavior in an extensible and framework agnostic interface.


Node.js scraper to get data from Google Play


[ICCV 2019] TSM: Temporal Shift Module for Efficient Video Understanding


I decide to sync up this repo and self-critical.pytorch. (The old master is in old master branch for archive)


List of Dirty, Naughty, Obscene, and Otherwise Bad Words


A denoising autoencoder + adversarial losses and attention mechanisms for face swapping.


Avalanche: an End-to-End Library for Continual Learning based on PyTorch.


Intel(R) RealSense(TM) ROS Wrapper for Depth Camera


UNIX-like reverse engineering framework and command-line toolset


Tools for producing high-quality hourly generation and emissions data for U.S. electric grids


LIO-SAM: Tightly-coupled Lidar Inertial Odometry via Smoothing and Mapping


Specification of the Cypher property graph query language


A FPGA friendly 32 bit RISC-V CPU implementation


Advanced Normalization Tools (ANTs)


Bayesian Evolutionary Analysis Sampling Trees


Tensors and Dynamic neural networks in Python with strong GPU acceleration


The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.


A simple code complexity analyser without caring about the C/C++ header files or Java imports, supports most of the popular languages.


The Scala 3 compiler, also known as Dotty.


De-Novo Repeat Discovery Tool


AstroDrizzle for HST images.


A collaborative review of the emerging COVID-19 literature. Join the chat here:


Virtuoso is a high-performance and scalable Multi-Model RDBMS, Data Integration Middleware, Linked Data Deployment, and HTTP Application Server Platform


SpikingJelly is an open-source deep learning framework for Spiking Neural Network (SNN) based on PyTorch.


[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy


95.47% on CIFAR10 with PyTorch


Chinese version of GPT2 training code, using BERT tokenizer.


The OpenWayback Development


Minimal PyTorch implementation of YOLOv3


KErnel OPerationS, on CPUs and GPUs, with autodiff and without memory overflows


Image-processing software for cryo-electron microscopy


Fast inference engine for Transformer models


RISC-V Tools (ISA Simulator and Tests)


LIBSVM -- A Library for Support Vector Machines


A library for doing homomorphic encryption operations on tensors


A C++ standalone library for machine learning


A Coq library for Homotopy Type Theory


This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.


JSON for Modern C++


A high performance and generic framework for distributed DNN training


Land Information System Framework


Astropy package for source detection and photometry. Maintainers: @larrybradley and @bsipocz


A new codebase for popular Scene Graph Generation methods (2020). Visualization & Scene Graph Extraction on custom images/datasets are provided. It's also a PyTorch implementation of paper “Unbiased Scene Graph Generation from Biased Training CVPR 2020”


Deployment scripts & config for Sock Shop


AMD ROCm™ Software - GitHub Home


Pushshift API


A ROS/ROS2 Multi-robot Simulator for Autonomous Vehicles


rllab is a framework for developing and evaluating reinforcement learning algorithms, fully compatible with OpenAI Gym.


Python particle tracking toolkit


PyPSA-Earth: A flexible Python-based open optimisation model to study energy system futures around the world.


Repository for suggesting new lineages that should be added to the current scheme


High-quality implementations of standard and SOTA methods on a variety of tasks.


Mathematical Components


Apache Lucene open-source search software


library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization


Free Public Transport Assistant without Ads or Tracking


Oxford Nanopore's Basecaller


Container Network Interface - networking for Linux containers


Implementation / replication of DALL-E, OpenAI's Text to Image Transformer, in Pytorch


A distributed approximate nearest neighborhood search (ANN) library which provides a high quality vector index build, search and distributed online serving toolkits for large scale vector search scenario.


Tools to work with android .dex and java .class files


The machine learning toolkit for time series analysis in Python


WRF-Hydro model code


Castro (Compressible Astrophysics): An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures.


ArduPlane, ArduCopter, ArduRover, ArduSub source


Llama中文社区，最好的中文Llama大模型，完全开源可商用


PyTorch original implementation of Cross-lingual Language Model Pretraining.


PyTorch implementations of Generative Adversarial Networks.


A free and open database for farming and gardening knowledge. You can grow anything!


cvc5 is an open-source automatic theorem prover for Satisfiability Modulo Theories (SMT) problems.


The Variable Infiltration Capacity (VIC) Macroscale Hydrologic Model


Pseudo API for Google Trends


Model summary in PyTorch similar to `model.summary()` in Keras


Open Source Pre-training Model Framework in PyTorch & Pre-trained Model Zoo


Direct Sparse Odometry


Graph Neural Network Library for PyTorch


Implementation of Dreambooth (https://arxiv.org/abs/2208.12242) with Stable Diffusion


Algorithms for outlier, adversarial and drift detection


An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..


Image augmentation library in Python for machine learning.


aiconfig -- config-driven, source control friendly AI application development


Feedforward style transfer


FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries


Program for analysing NGS data.


A synthetic data generator for text recognition


Technical specifications for the libp2p networking stack


Faster R-CNN


This is an official implementation for "Swin Transformer: Hierarchical Vision Transformer using Shifted Windows" on Object Detection and Instance Segmentation.


Python Script to download hundreds of images from 'Google Images'. It is a ready-to-run code!


Simple HTTP and REST client for Ruby, inspired by microframework syntax for specifying actions.


ECMAScript code generator


A Framework for Encrypted Machine Learning in TensorFlow


Image Deblurring using Generative Adversarial Networks