SchNetPack - Deep Neural Networks for Atomistic Systems

SchNet: A continuous-filter convolutional neural network for modeling quantum interactions

Accurate and scalable graph neural network force field and molecular dynamics with direct force architecture

Energy-Motivated Equivariant Pretraining for 3D Molecular Graphs

SchNetPack 2.0: A neural network toolbox for atomistic machine learning

Characterizing Uncertainty in Machine Learning for Chemistry

Journal of chemical information and modeling

NG+ : A Multi-Step Matrix-Product Natural Gradient Method for Deep
  Learning

LagrangeBench: A Lagrangian Fluid Mechanics Benchmarking Suite

Stress and heat flux via automatic differentiation

Machine learning interatomic potentials for reactive hydrogen dynamics
  at metal surfaces based on iterative refinement of reaction probabilities


Neuronal Morphology Analysis Tool

Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes

A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep

Predicting Synaptic Connectivity for Large-Scale Microcircuit Simulations Using Snudda


Creative Commons Attribution Share Alike 4.0 International

The Signal Metadata Format Specification

Deep Complex Networks for Protocol-Agnostic Radio Frequency Device Fingerprinting in the Wild

AutoEncoders for Training Compact Deep Learning RF Classifiers for Wireless Protocols

Work In Progress: Towards Adaptive RF Fingerprint-based Authentication of IIoT devices

LTE I/Q Data Set for UAV Propagation Modeling, Communication, and Navigation Research


Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.

DocBank: A Benchmark Dataset for Document Layout Analysis

Image-based table recognition: data, model, and evaluation

Legal Area Classification: A Comparative Study of Text Classifiers on Singapore Supreme Court Judgments

The Semantic Scholar Open Data Platform

TabLeX: A Benchmark Dataset for Structure and Content Information Extraction from Scientific Tables

PAWLS: PDF Annotation With Labels and Structure

A Benchmark of PDF Information Extraction Tools Using a Multi-task and Multi-domain Evaluation Framework for Academic Documents

Multimodal Tree Decoder for Table of Contents Extraction in Document Images

Layout-Aware Information Extraction for Document-Grounded Dialogue:
  Dataset, Method and Demonstration

Skim-Attention: Learning to Focus via Document Layout


Native Python WFDB package

An Open-source Toolbox for Analysing and Processing PhysioNet Databases in MATLAB and Octave

Investigating Feature Selection and Random Forests for Inter-Patient Heartbeat Classification

An Efficient Fingertip Photoplethysmographic Signal Artifact Detection Method: A Machine Learning Approach


Mixed-effects models in R using S4 classes and methods with RcppEigen

lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals

AKR-001, an Fc-FGF21 Analog, Showed Sustained Pharmacodynamic Effects on Insulin Sensitivity and Lipid Metabolism in Type 2 Diabetes Patients

Age and sex related changes in episodic memory function in middle aged and older adults

Leaf silica concentration in Serengeti grasses increases with watering but not clipping: insights from a common garden study and literature review

Connectivity Neurofeedback Training Can Differentially Change Functional Connectivity and Cognitive Performance

Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola Breeding

What accounts for individual differences in susceptibility to the McGurk effect?

Infection Dynamics and Immune Response in a Newly Described Drosophila-Trypanosomatid Association

Harem-holding males do not rise to the challenge: androgens respond to social but not to seasonal challenges in wild geladas

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples


Python library for Reinforcement Learning.

MushroomRL: Simplifying Reinforcement Learning Research

Continuous Action Reinforcement Learning from a Mixture of Interpretable
  Experts

Boosting Object Representation Learning via Motion and Object Continuity

An Empirical Analysis of Measure-Valued Derivatives for Policy Gradients

Efficient Reinforcement Learning Development with RLzoo

Batch Reinforcement Learning with a Nonparametric Off-Policy Policy
  Gradient

Continuous-Time Fitted Value Iteration for Robust Policies


An Easy-to-use Knowledge Editing Framework for LLMs.

Editing Large Language Models: Problems, Methods, and Opportunities

EasyEdit: An Easy-to-use Knowledge Editing Framework for Large Language
  Models

Can We Edit Multimodal Large Language Models?

A Comprehensive Study of Knowledge Editing for Large Language Models

Editing Personality for LLMs

Cross-Lingual Knowledge Editing in Large Language Models

See the Unseen: Better Context-Consistent Knowledge-Editing by Noises

SWEA: Changing Factual Knowledge in Large Language Models via Subject
  Word Embedding Altering

The Butterfly Effect of Model Editing: Few Edits Can Trigger Large
  Language Models Collapse


Fast spike sorting with drift correction for up to a thousand channels

Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice

A midbrain-thalamus-cortex circuit reorganizes cortical dynamics to initiate movement

SpikeForest: reproducible web-facing ground-truth validation of automated neural spike sorters

Multimodal determinants of phase-locked dynamics across deep-superficial hippocampal sublayers during theta oscillations

Robust information routing by dorsal subiculum neurons

Behavioral origin of sound-evoked activity in mouse visual cortex

Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology

MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity

Disrupting cortico-cerebellar communication impairs dexterity

Multisensory coding of angular head velocity in the retrosplenial cortex


CogniCrypt_SAST: CrySL-to-Static Analysis Compiler

A First Look at Android Applications in Google Play related to Covid-19

Evaluation of Static Vulnerability Detection Tools With Java Cryptographic API Benchmarks

To Fix or Not to Fix: A Critical Study of Crypto-misuses in the Wild

Integration of the Static Analysis Results Interchange Format in CogniCrypt.


Creative Commons Attribution 4.0 International

Working draft of the proposed RISC-V Bitmanipulation extension

An Instruction Set Extension to Support Software-Based Masking

IACR transactions on cryptographic hardware and embedded systems

RISC-V Instruction Set Extensions for Lightweight Symmetric Cryptography

Symmetric Cryptography on RISC-V: Performance Evaluation of Standardized Algorithms


The Water Distribution System Hydraulic and Water Quality Analysis Toolkit


Data generation and submission scripts for the QCArchive ecosystem.

End-to-End Differentiable Molecular Mechanics Force Field Construction

Capturing non-local through-bond effects when fragmenting molecules for quantum chemical torsion scans

EspalomaCharge: Machine learning-enabled ultra-fast partial charge
  assignment

Capturing non-local through-bond effects in molecular mechanics force fields: II. Using fractional bond orders to fit torsion parameters

Machine-learned molecular mechanics force field for the simulation of
  protein-ligand systems and beyond


The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.

The emergence of modern zoogeographic regions in Asia examined through climate–dental trait association patterns


Fast Neural Machine Translation in C++

Marian: Fast Neural Machine Translation in C++

Edinburgh Neural Machine Translation Systems for WMT 16

The Sockeye 2 Neural Machine Translation Toolkit at AMTA 2020

Is Neural Machine Translation Ready for Deployment? A Case Study on 30 Translation Directions

ParaCrawl: Web-Scale Acquisition of Parallel Corpora

Meeting of the Association for Computational Linguistics

Approaching Neural Grammatical Error Correction as a Low-Resource Machine Translation Task

Log-linear Combinations of Monolingual and Bilingual Neural Machine Translation Models for Automatic Post-Editing

Pushing the Limits of Translation Quality Estimation

Transactions of the Association for Computational Linguistics

From Research to Production and Back: Ludicrously Fast Neural Machine Translation

Empirical Methods in Natural Language Processing

Controllable Text Simplification with Lexical Constraint Loss


Context Broker and CEF building block for context data management which supports both the NGSI-LD and the NGSI-v2 APIs

A Standard-Based Open Source IoT Platform: FIWARE

Using FIWARE and blockchain in smart cities solutions

VirIoT: A Cloud of Things That Offers IoT Infrastructures as a Service


Energy Research and Forecasting Model


A framework for Smoothed Particle Hydrodynamics in Python

PySPH: A Python-based Framework for Smoothed Particle Hydrodynamics

ACM transactions on mathematical software

Algorithms for uniform particle initialization in domains with complex boundaries

Parallel adaptive weakly-compressible SPH for complex moving geometries


Making Protein folding accessible to all!

ColabFold - Making protein folding accessible to all

A hyperpromiscuous antitoxin protein domain for the neutralization of diverse toxin domains

Proceedings of the National Academy of Sciences of the United States of America

Structural basis for ATG9A recruitment to the ULK1 complex in mitophagy initiation

Splicing QTL analysis focusing on coding sequences reveals mechanisms for disease susceptibility loci

Phosphoregulation of DSB-1 mediates control of meiotic double-strand break activity

Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation

Insertions in the SARS-CoV-2 Spike N-Terminal Domain May Aid COVID-19 Transmission

Comparing Native Crystal Structures and AlphaFold2 Predicted Water-Soluble G Protein-Coupled Receptor QTY Variants

TMEM161B regulates cerebral cortical gyration, Sonic Hedgehog signaling, and ciliary structure in the developing central nervous system

How do I get the most out of my protein sequence using bioinformatics tools?

Acta crystallographica. Section D, Structural biology


:movie_camera: Python and OpenCV-based scene cut/transition detection program & library.

Robots Learn Social Skills: End-to-End Learning of Co-Speech Gesture Generation for Humanoid Robots

Spot the conversation: speaker diarisation in the wild

Stable Video Diffusion: Scaling Latent Video Diffusion Models to Large
  Datasets

LAVIE: High-Quality Video Generation with Cascaded Latent Diffusion
  Models

Generic Event Boundary Detection: A Benchmark for Event Segmentation

VideoFactory: Swap Attention in Spatiotemporal Diffusions for
  Text-to-Video Generation

InternVid: A Large-scale Video-Text Dataset for Multimodal Understanding
  and Generation

A Deep Ranking Model for Spatio-Temporal Highlight Detection from a 360 Video

Partially Relevant Video Retrieval

Proceedings of the 30th ACM International Conference on Multimedia

A Neural Multi-sequence Alignment TeCHnique (NeuMATCH)


Intel PMU profiling tools

Data Motifs: A Lens Towards Fully Understanding Big Data and AI
  Workloads

BigDataBench: A Scalable and Unified Big Data and AI Benchmark Suite

BigDataBench: A Dwarf-based Big Data and AI Benchmark Suite.

Scalable Communication Endpoints for MPI+Threads Applications

International Conference on Parallel and Distributed Systems

Profiling dataflow systems on multiple abstraction levels

PROCEEDINGS OF THE SIXTEENTH EUROPEAN CONFERENCE ON COMPUTER SYSTEMS (EUROSYS '21)

PMUSpill: The Counters in Performance Monitor Unit that Leak
  SGX-Protected Secrets

Analysis and Optimization of GNN-Based Recommender Systems on Persistent
  Memory

CXLMemSim: A pure software simulated CXL.mem for performance
  characterization


Bayesian Light Source Separator

Variational Inference for Deblending Crowded Starfields


Open Source Car Control

N 2 C : Neural Network Controller Design Using Behavioral Cloning

Multi-Modal Fusion for Sensorimotor Coordination in Steering Angle
  Prediction


Signal-level algorithms for MinION data

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

Real-time, portable genome sequencing for Ebola surveillance

A complete bacterial genome assembled de novo using only nanopore sequencing data

Telomere-to-telomere assembly of a complete human X chromosome

Nanopore native RNA sequencing of a human poly(A) transcriptome

D614G Spike Mutation Increases SARS CoV-2 Susceptibility to Neutralization

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

Research in Computational Molecular Biology

Epigenetic Patterns in a Complete Human Genome


Arb has been merged into FLINT -- use https://github.com/flintlib/flint/ instead

Arb: Efficient Arbitrary-Precision Midpoint-Radius Interval Arithmetic

Computing Hypergeometric Functions Rigorously

Outgoing solutions and radiation boundary conditions for the ideal atmospheric scalar wave equation in helioseismology

Modélisation mathématique et analyse numérique

Scarcity of congruences for the partition function

How to split a tera-polynomial


Modules for Experiments in Stellar Astrophysics

Carbon-Oxygen Phase Separation in MESA White Dwarf Models

The White Dwarf Mass-Orbital Period Relation Under Wind Mass Loss


a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Cellpose 2.0: how to train your own model

Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation

A calibrated optogenetic toolbox of stable zebrafish opsin lines

NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale

Deep Learning in Single-Cell Analysis

Biased Coupling to β-Arrestin of Two Common Variants of the CB2 Cannabinoid Receptor

Scellseg: A style-aware deep learning tool for adaptive cell instance segmentation by contrastive fine-tuning

Genome-wide screening reveals metabolic regulation of stop-codon readthrough by cyclic AMP

BBQ methods: Streamlined workflows for Bacterial Burden Quantification in infected cells by confocal microscopy

bioRxiv : the preprint server for biology

Cellpose3: one-click image restoration for improved cellular segmentation


A lightweight parameter server interface

Parallel Distributed Logistic Regression for Vertical Federated Learning without Third-Party Coordinator

HET: Scaling out Huge Embedding Model Training via Cache-enabled Distributed Framework

MiCS: Near-linear Scaling for Training Gigantic Model on Public Cloud

Feature-Distributed SVRG for High-Dimensional Linear Classification

Enabling Fast and Flexible Distributed Deep Learning with Programmable
  Switches


Open Source Neural Machine Translation in PyTorch

Convolutional Sequence to Sequence Learning

Simple Recurrent Units for Highly Parallelizable Recurrence

OpenNMT: Neural Machine Translation Toolkit

Multilingual NMT with a language-independent attention bridge

A Systematic Study of Inner-Attention-Based Sentence Representations in Multilingual Neural Machine Translation

An Evaluation of Language-Agnostic Inner-Attention-Based Representations in Machine Translation

Democratizing Neural Machine Translation with OPUS-MT


Orbit-fitting for directly imaged objects

Population-level Eccentricity Distributions of Imaged Exoplanets and Brown Dwarf Companions: Dynamical Evidence for Distinct Formation Channels

orbitize!: A Comprehensive Orbit-fitting Software Package for the High-contrast Imaging Community

Radial Velocity Measurements of HR 8799 b and c with Medium Resolution Spectroscopy

Obliquity Constraints on an Extrasolar Planetary-mass Companion

Deep Exploration of the Planets HR 8799 b, c, and d with Moderate-resolution Spectroscopy

Radial Velocity Discovery of an Eccentric Jovian World Orbiting at 18 au

Constraining the Orbit and Mass of epsilon Eridani b with Radial Velocities, Hipparcos IAD-Gaia DR2 Astrometry, and Multiepoch Vortex Coronagraphy Upper Limits

Obliquity Constraints on the Planetary-mass Companion HD 106906 b

A scaled-up planetary system around a supernova progenitor

GRAVITY K-band spectroscopy of HD 206893 B: brown dwarf or exoplanet


Trying to tame the three-headed dog.

On Attacking Kerberos Authentication Protocol in Windows Active Directory Services: A Practical Survey

Investigating the Ecosystem of Offensive Information Security Tools


Easy access to official spatial data sets of Brazil in R and Python

The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil

Mutation hotspots and spatiotemporal distribution of SARS-CoV-2 lineages in Brazil, February 2020-2021

Reemergence of yellow fever virus in southeastern Brazil, 2017-2018: what sparked the spread?

Tracking the turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian state (Minas Gerais) with a high-vaccination status

Genomic Surveillance of SARS-CoV-2 Lineages Indicates Early Circulation of P.1 (Gamma) Variant of Concern in Southern Brazil

Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis

First reports of fimicolous myxomycetes (Protozoa: Amoebozoa) from Brazilian Cerrado and Pantanal biomes

Municipality-level measles, mumps, and rubella (MMR) vaccine coverage and deprivation in Brazil: A nationwide ecological study, 2006 to 2020


OWL API main repository

An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival

BMC medical informatics and decision making

Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools

Methods in molecular biology (Clifton, N.J.)

A Rule-Based Reasoner for Underwater Robots Using OWL and SWRL

Development Experience of a Context-Aware System for Smart Irrigation Using CASO and IRRIG Ontologies

Leveraging Algorithms to Improve Decision-Making Workflows for Genomic Data Access and Management

OWLSIZ: An isiZulu CNL for structured knowledge validation

Integroly: Automatic Knowledge Graph Population from Social Big Data in the Political Marketing Domain

Extraction of common conceptual components from multiple ontologies

Towards VEsNA, a Framework for Managing Virtual Environments via Natural Language Agents

Domain Usability Evaluation


ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator

Towards Fast, Accurate and Stable 3D Dense Face Alignment

IntelliCode Compose: Code Generation Using Transformer

The INTERSPEECH 2020 Deep Noise Suppression Challenge: Datasets, Subjective Testing Framework, and Challenge Results

DeepSpeed- Inference: Enabling Efficient Inference of Transformer Models at Unprecedented Scale

The INTERSPEECH 2020 Deep Noise Suppression Challenge: Datasets, Subjective Speech Quality and Testing Framework

TurboTransformers: An Efficient GPU Serving System For Transformer Models

Extending Relational Query Processing with ML Inference

Cloudy with high chance of DBMS: A 10-year prediction for Enterprise-Grade ML

End-to-end Optimization of Machine Learning Prediction Queries

Proceedings of the 2022 International Conference on Management of Data

Detect Faces Efficiently: A Survey and Evaluations

IEEE transactions on biometrics, behavior, and identity science


Text mining using tidy tools :sparkles::page_facing_up::sparkles:

Tidy Data

tidytext: Text Mining and Analysis Using Tidy Data Principles in R

Confirmatory Aspect-based Opinion Mining Processes


GenX: a configurable power system capacity expansion model for studying low-carbon energy futures. More details at : https://genx.mit.edu

Minimizing emissions from grid-based hydrogen production in the United States

Zenodo (CERN European Organization for Nuclear Research)

Decarbonization of the Indian electricity sector: Technology choices and policy trade-offs

Decision making under uncertainty for deploying battery storage as a non-wire alternative in distribution networks

Impact of demand growth on decarbonizing India's electricity sector and
  the role for energy storage

Land use trade-offs in decarbonization of electricity generation in the American West

The value of fusion energy to a decarbonized United States electric grid

Optimize Deep Decarbonization Pathways in California with Power System
  Planning Using Surrogate Level-based Lagrangian Relaxation

Reducing transmission expansion by co-optimizing sizing of wind, solar,
  storage and grid connection capacity


Hidden Markov Models in Python, with scikit-learn like API

Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience

A parsimonious description of global functional brain organization in three spatiotemporal patterns

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

Improving condition- and environment-invariant place recognition with semantic place categorization

Multiple perspectives HMM-based feature engineering for credit card fraud detection

Implementation and Assessment of an Intelligent Motor Tele-Rehabilitation Platform

Fake News Detection using Stance Classification: A Survey

Learning, Improving, and Generalizing Motor Skills for the Peg-in-Hole Tasks Based on Imitation Learning and Self-Learning

Recovering from External Disturbances in Online Manipulation through State-Dependent Revertive Recovery Policies

A Hybrid Hidden Markov Model for Pipeline Leakage Detection


The Learning Interpretability Tool: Interactively analyze ML models to understand their behavior in an extensible and framework agnostic interface.

Well-Read Students Learn Better: On the Importance of Pre-training Compact Models

Interpretable deep learning: interpretation, interpretability, trustworthiness, and beyond

The Language Interpretability Tool: Extensible, Interactive Visualizations and Analysis for NLP Models


A shared API for QUBO/Ising samplers.

Open source software in quantum computing

Quantum Annealing vs. QAOA: 127 Qubit Higher-Order Ising Problems on
  NISQ Computers

Hybrid quantum-classical optimization for financial index tracking

Improving Quantum Annealing Performance on Embedded Problems

Supercomputing frontiers and innovations

Calculating Nash equilibrium on quantum annealers

Omnisolver: an extensible interface to Ising spin glass solvers


This is now the official location of the Merlin project.

The Voice Conversion Challenge 2018: Promoting Development of Parallel and Nonparallel Methods

Non-Parallel Sequence-to-Sequence Voice Conversion With Disentangled Linguistic and Speaker Representations

IEEE/ACM transactions on audio, speech, and language processing

The Lacunae of Danish Natural Language Processing

Nordic Conference of Computational Linguistics

Speaker independence of neural vocoders and their effect on parametric
  resynthesis speech enhancement

High-quality vocoding design with signal processing for speech synthesis and voice conversion

Speech Synthesis for Conversational News Contents Delivery

Transactions of the Japanese society for artificial intelligence


Imaging, analysis, and simulation software for radio interferometry

First M87 Event Horizon Telescope Results. IV. Imaging the Central Supermassive Black Hole

First M87 Event Horizon Telescope Results. VII. Polarization of the Ring

Black Hole Spin Signature in the Black Hole Shadow of M87 in the Flaring State

HIGH-RESOLUTION LINEAR POLARIMETRIC IMAGING FOR THE EVENT HORIZON TELESCOPE

Interferometric Imaging Directly with Closure Phases and Closure Amplitudes

The Size, Shape, and Scattering of Sagittarius A* at 86 GHz: First VLBI with ALMA

Event Horizon Telescope observations of the jet launching and collimation in Centaurus A

Dynamical Imaging with Interferometry

Simulations of imaging the event horizon of Sagittarius A* from space

STOCHASTIC OPTICS: A SCATTERING MITIGATION FRAMEWORK FOR RADIO INTERFEROMETRIC IMAGING


Trinity RNA-Seq de novo transcriptome assembly

The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression

Comprehensive Transcriptome Analyses Reveal Differential Gene Expression Profiles of Camellia sinensis Axillary Buds at Para-, Endo-, Ecodormancy, and Bud Flush Stages

Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer

Gonadal transcriptomic analysis and differentially expressed genes in the testis and ovary of the Pacific white shrimp (Litopenaeus vannamei)

A moth odorant receptor highly expressed in the ovipositor is involved in detecting host-plant volatiles

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses

Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome

Single-cell RNA-seq analysis reveals penaeid shrimp hemocyte subpopulations and cell differentiation process

Evidence for Active Uptake and Deposition of Si-based Defenses in Tall Fescue


:memo: python package to calculate readability statistics of a text object - paragraphs, sentences, articles.

Making Science Simple: Corpora for the Lay Summarisation of Scientific Literature

Controlling the Reading Level of Machine Translation Output

Machine learning for learner English

International journal of learner corpus research

TextDescriptives: A Python package for calculating a large variety of
  metrics from text

Patient-friendly Clinical Notes: Towards a new Text Simplification Dataset

Proceedings of the Workshop on Text Simplification, Accessibility, and Readability (TSAR-2022)

Meta-learning of textual representations

Recursive Style Breach Detection with Multifaceted Ensemble Learning

Linguistic effects on news headline success: Evidence from thousands of online field experiments (Registered Report Protocol)

MailTrout: A Machine Learning Browser Extension for Detecting Phishing Emails

Data on post bank customer reviews from web


AI for tomography

Boosting Active Learning via Improving Test Performance

AITom: Open-source AI platform for cryo-electron Tomography data analysis.

Active Learning to Classify Macromolecular Structures in situ for Less Supervision in Cryo-Electron Tomography

Few shot domain adaptation for in situ macromolecule structural classification in cryoelectron tomograms

Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization


Read excel files (.xls and .xlsx) into R

Monocyte Trafficking and Polarization Contribute to Sex Differences in Meta-Inflammation

Hypophosphatemia Due to Increased Effector Cell Metabolic Activity Is Associated with Neurotoxicity Symptoms in CD19-Targeted CAR T-cell Therapy

Scalable RT‐LAMP‐based SARS‐CoV‐2 testing for infection surveillance with applications in pandemic preparedness

Early detection of soluble CD27, BTLA, and TIM-3 predicts the development of nosocomial infection in pediatric burn patients

The Use of a Replicating Virus Vector For in Planta Generation of Tobacco Mosaic Virus Nanorods Suitable For Metallization

Frontiers in bioengineering and biotechnology

Climate change conditions the selection of rust-resistant candidate wild lentil populations for in situ conservation

Human Fis1 directly interacts with Drp1 in an evolutionarily conserved manner to promote mitochondrial fission

Development of a Decision Support System for the Management of Mummy Berry Disease in Northwestern Washington

Public Knowledge and Attitude towards Vitiligo: A Cross-Sectional Survey in Jordan

International journal of environmental research and public health

Generalized gametic relationships for flexible analyses of parent-of-origin effects


Facebook AI Research's Automatic Speech Recognition Toolkit

XLS-R: Self-supervised Cross-lingual Speech Representation Learning at Scale

MLS: A Large-Scale Multilingual Dataset for Speech Research

End-to-end ASR: from Supervised to Semi-Supervised Learning with Modern Architectures

Unsupervised Speech Recognition

wav2letter++: The Fastest Open-source Speech Recognition System

International Conference on Acoustics, Speech, and Signal Processing

Self-attention Networks for Connectionist Temporal Classification in Speech Recognition

Iterative Pseudo-Labeling for Speech Recognition

Rethinking Evaluation in ASR: Are Our Models Robust Enough?

Performance-Efficiency Trade-offs in Unsupervised Pre-training for
  Speech Recognition

Self-Training for End-to-End Speech Translation


T.J. Watson Libraries for Analysis, with frontends for Java, Android, and JavaScript, and may common static program analyses

Project CodeNet: A Large-Scale AI for Code Dataset for Learning a Diversity of Coding Tasks

Program Analysis of Commodity IoT Applications for Security and Privacy: Challenges and Opportunities

A Large-Scale Empirical Comparison of Static and Dynamic Test Case Prioritization Techniques

How Do Static and Dynamic Test Case Prioritization Techniques Perform on Modern Software Systems? An Extensive Study on GitHub Projects

IEEE transactions on software engineering

Assessing Test Case Prioritization on Real Faults and Mutants

Ariadne: Analysis for Machine Learning Program

Proceedings of the 2nd ACM SIGPLAN International Workshop on Machine Learning and Programming Languages

Optimal and Perfectly Parallel Algorithms for On-demand Data-Flow Analysis

Example-Based Vulnerability Detection and Repair in Java Code

Deep Static Modeling of invokedynamic

Compatible Remediation on Vulnerabilities from Third-Party Libraries for Java Projects


NeMo Guardrails is an open-source toolkit for easily adding programmable guardrails to LLM-based conversational systems.

"Do Anything Now": Characterizing and Evaluating In-The-Wild Jailbreak
  Prompts on Large Language Models

Use of LLMs for Illicit Purposes: Threats, Prevention Measures, and
  Vulnerabilities

Survey of Vulnerabilities in Large Language Models Revealed by
  Adversarial Attacks

NeMo Guardrails: A Toolkit for Controllable and Safe LLM Applications with Programmable Rails

Next Steps for Human-Centered Generative AI: A Technical Perspective

Prompting Frameworks for Large Language Models: A Survey

Comprehensive Assessment of Jailbreak Attacks Against LLMs

Large Language Models as Agents in the Clinic


Minimalist NMT for educational purposes

Sequence-to-Sequence Learning as Beam-Search Optimization

An Actor-Critic Algorithm for Sequence Prediction

The Sockeye 2 Neural Machine Translation Toolkit at AMTA 2020

Participatory Research for Low-resourced Machine Translation: A Case Study in African Languages

Joey NMT: A Minimalist NMT Toolkit for Novices

Sparse and Continuous Attention Mechanisms

Learning Kernel-Smoothed Machine Translation with Retrieved Examples

Automatic Interlinear Glossing for Under-Resourced Languages Leveraging Translations

International Conference on Computational Linguistics

Self-Regulated Interactive Sequence-to-Sequence Learning

Edit Distance Based Curriculum Learning for Paraphrase Generation

International Joint Conference on Natural Language Processing


Crocoddyl is an optimal control library for robot control under contact sequence. Its solver is based on various efficient Differential Dynamic Programming (DDP)-like algorithms

Crocoddyl: An Efficient and Versatile Framework for Multi-Contact Optimal Control

Differential Dynamic Programming for Multi-Phase Rigid Contact Dynamics

IEEE-RAS International Conference on Humanoid Robots

A feasibility-driven approach to control-limited DDP


N-body and hydro analysis tools for Python 3. (Older versions support Python 2.)

The stellar mass-halo mass relation of isolated field dwarfs: a critical test of ΛCDM at the edge of galaxy formation

Monthly notices of the Royal Astronomical Society

A Superbubble Feedback Model for Galaxy Simulations

Understanding the shape and diversity of dwarf galaxy rotation curves in ΛCDM

Adaptive Techniques for Clustered N-Body Cosmological Simulations

The formation of stellar nuclear discs in bar-induced gas inflows

The formation of ultradiffuse galaxies in the RomulusC galaxy cluster simulation

The formation of isolated ultradiffuse galaxies in romulus25

Simulating disc galaxy bulges that are consistent with observed scaling relations

Monthly Notices of the Royal Astronomical Society: Letters

Bars and spirals in tidal interactions with an ensemble of galaxy mass models

Young and turbulent: the early life of massive galaxy progenitors


Professional interface of the Energy Transition model.


The optimizing Quil compiler.

A quantum-classical cloud platform optimized for variational hybrid algorithms

A Verified Optimizer for Quantum Circuits

Symposium on Principles of Programming Languages

Architecting Noisy Intermediate-Scale Trapped Ion Quantum Computers

An Open-Source, Industrial-Strength Optimizing Compiler for Quantum Programs

Resource-Efficient Quantum Computing by Breaking Abstractions

Systematic Literature Review: Quantum Machine Learning and its
  applications

Verified Compilation of Quantum Oracles


:house_with_garden: Fast & easy transfer learning for NLP. Harvesting language models for the industry. Focus on Question Answering.

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Transformers: State-of-the-Art Natural Language Processing

Unsupervised Cross-lingual Representation Learning at Scale

Revisiting Few-sample BERT Fine-tuning

German's Next Language Model

Evaluating the Robustness of Neural Language Models to Input Perturbations

GottBERT: a pure German Language Model

Bagging BERT Models for Robust Aggression Identification

Workshop on Trolling, Aggression and Cyberbullying

GermanQuAD and GermanDPR: Improving Non-English Question Answering and Passage Retrieval

PO-EMO: Conceptualization, Annotation, and Modeling of Aesthetic Emotions in German and English Poetry


High-order Lagrangian Hydrodynamics Miniapp

MFEM: a modular finite element methods library

Computers and Mathematics with Applications

Reduced order models for Lagrangian hydrodynamics

Non-Conforming Mesh Refinement for High-Order Finite Elements

Local Lagrangian reduced-order modeling for Rayleigh-Taylor instability
  by solution manifold decomposition

GPU Algorithms for Efficient Exascale Discretizations

A quadratic programming flux correction method for high-order DG discretizations of SN transport

Matrix-free approaches for GPU acceleration of a high-order finite element hydrodynamics application using MFEM, Umpire, and RAJA

A High-Order Shifted Interface Method for Lagrangian Shock Hydrodynamics

Weak Boundary Conditions for Lagrangian Shock Hydrodynamics: A
  High-Order Finite Element Implementation on Curved Boundaries

High-performance finite elements with MFEM


Phonon code

Design of a multifunctional polar metal via first-principles high-throughput structure screening

On the possibility that PbZrO3 not be antiferroelectric

Assessing the feasibility of near-ambient conditions superconductivity
  in the Lu-N-H system

Temporally decoherent and spatially coherent vibrations in metal halide perovskites

Panoramic mapping of phonon transport from ultrafast electron
  diffraction and machine learning


MLPerf™ logging library

MLPerf™ HPC: A Holistic Benchmark Suite for Scientific Machine Learning on HPC Systems


A python implementation of Gate Set Tomography

Computing with spin qubits at the surface code error threshold

Detecting and tracking drift in quantum information processors

Experimental Pauli-frame randomization on a superconducting qubit

Rigorous measurement error correction

Bootstrapping quantum process tomography via a perturbative ansatz

Conditionally Rigorous Mitigation of Multiqubit Measurement Errors

Self-consistent quantum tomography with regularization


Various code metrics for Python code

In-IDE Code Generation from Natural Language: Promise and Challenges

Magni: A Python Package for Compressive Sampling and Reconstruction of Atomic Force Microscopy Images

Towards better data discovery and collection with flow-based programming

Refactoring Programs Using Large Language Models with Few-Shot Examples


The PennyLane-Lightning plugin provides a fast state-vector simulator written in C++ for use with PennyLane

PennyLane: Automatic differentiation of hybrid quantum-classical computations

All you need is spin: SU(2) equivariant variational quantum circuits
  based on spin networks

Hybrid quantum programming with PennyLane Lightning on HPC platforms


Schrödinger and Schrödinger-Feynman simulators for quantum circuits.

Simulations of Quantum Circuits with Approximate Noise using qsim and Cirq

Faster Schrödinger-style simulation of quantum circuits

Logical Abstractions for Noisy Variational Quantum Algorithm Simulation

Learnability and Complexity of Quantum Samples


StellarGraph - Machine Learning on Graphs

Inductive Representation Learning on Large Graphs

Complex Embeddings for Simple Link Prediction

Adversarial Examples on Graph Data: Deep Insights into Attack and Defense

ktrain: A Low-Code Library for Augmented Machine Learning

Automated Machine Learning on Graphs: A Survey

Efficient Graph Deep Learning in TensorFlow with tf_geometric

Joint embedding of structure and features via graph convolutional networks

CogDL: A Comprehensive Library for Graph Deep Learning

Graph Neural Networks for Particle Tracking and Reconstruction

TCL: Transformer-based Dynamic Graph Modelling via Contrastive Learning


The Arcade Learning Environment (ALE) -- a platform for AI research.

The Arcade Learning Environment: An Evaluation Platform for General Agents

PROCEEDINGS OF THE TWENTY-FOURTH INTERNATIONAL JOINT CONFERENCE ON ARTIFICIAL INTELLIGENCE (IJCAI)

Unmasking Clever Hans predictors and assessing what machines really learn

Revisiting the Arcade Learning Environment: Evaluation Protocols and Open Problems for General Agents

A Benchmark Environment Motivated by Industrial Control Problems

IEEE Symposium Series on Computational Intelligence

Reuse of Neural Modules for General Video Game Playing

Temporal Difference Uncertainties as a Signal for Exploration

Towards AGI in Computer Vision: Lessons Learned from GPT and Large
  Language Models

Improving Experience Replay through Modeling of Similar Transitions' Sets


A library for flexible voxel-based mapping, mainly focusing on truncated and Euclidean signed distance fields.

CERBERUS: Autonomous Legged and Aerial Robotic Exploration in the Tunnel and Urban Circuits of the DARPA Subterranean Challenge

Safe Local Exploration for Replanning in Cluttered Unknown Environments for Microaerial Vehicles

International Conference on Robotics and Automation

Voxgraph: Globally Consistent, Volumetric Mapping Using Signed Distance Function Submaps

Sparse 3D Topological Graphs for Micro-Aerial Vehicle Planning

An open‐source system for vision‐based micro‐aerial vehicle mapping, planning, and flight in cluttered environments

C-blox: A Scalable and Consistent TSDF-based Dense Mapping Approach

VDBFusion: Flexible and Efficient TSDF Integration of Range Sensor Data

Team CERBERUS Wins the DARPA Subterranean Challenge: Technical Overview
  and Lessons Learned

A Unified NMPC Scheme for MAVs Navigation With 3D Collision Avoidance Under Position Uncertainty

The HAInich: A multidisciplinary vision data-set for a better understanding of the forest ecosystem


ROBOTIS Dynamixel SDK (Protocol1.0/2.0)

On Locomotion Control Using Position Feedback Only in Traversing Rough Terrains with Hexapod Crawling Robot

IOP conference series. Materials science and engineering

High-Precision Low-Cost Gimballing Platform for Long-Range Railway Obstacle Detection

Contact feedback helps snake robots propel against uneven terrain using vertical bending


A Python implementation of LightFM, a hybrid recommendation algorithm.

CoNet: Collaborative Cross Networks for Cross-Domain Recommendation

Conference on Information and Knowledge Management

Metadata Embeddings for User and Item Cold-start Recommendations

Collaborative Similarity Embedding for Recommender Systems

Transfer Meets Hybrid: A Synthetic Approach for Cross-Domain Collaborative Filtering with Text

GPT4Rec: A Generative Framework for Personalized Recommendation and User
  Interests Interpretation

Sampling-Decomposable Generative Adversarial Recommender

Fast Variational AutoEncoder with Inverted Multi-Index for Collaborative Filtering

Automatic playlist continuation using a hybrid recommender system combining features from text and audio

RECSYS CHALLENGE'18: PROCEEDINGS OF THE ACM RECOMMENDER SYSTEMS CHALLENGE 2018

Online POI Recommendation: Learning Dynamic Geo-Human Interactions in Streams

Deep Cross Networks with Aesthetic Preference for Cross-domain
  Recommendation


A Python library that helps data scientists to infer causation rather than observing correlation.

Evaluation Methods and Measures for Causal Learning Algorithms

DoWhy-GCM: An extension of DoWhy for causal inference in graphical
  causal models

Entropy-Based Discovery of Summary Causal Graphs in Time Series

Evaluation of Induced Expert Knowledge in Causal Structure Learning by NOTEARS

Causalvis: Visualizations for Causal Inference

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems

Causal Discovery and Causal Learning for Fire Resistance Evaluation:
  Incorporating Domain Knowledge

Case Studies of Causal Discovery from IT Monitoring Time Series

Learning domain-specific causal discovery from time series

MACFE: A Meta-learning and Causality Based Feature Engineering Framework

Application of Causal Inference to Analytical Customer Relationship
  Management in Banking and Insurance


Orocos Kinematics and Dynamics C++ library

Virtual Forward Dynamics Models for Cartesian Robot Control

Towards self-adaptable robots: from programming to training machines

Motion Macro Programming on Assistive Robotic Manipulators: Three Skill Types for Everyday Tasks


Project 1


Grid Singularity Energy Exchange


A Python API for working with Neurodata stored in the NWB Format

The Neurodata Without Borders ecosystem for neurophysiological data science

NWB Query Engines: Tools to Search Data Stored in Neurodata Without Borders Format

A perspective on neuroscience data standardization with Neurodata Without Borders.


Correctly generate plurals, ordinals, indefinite articles; convert numbers to words

Vision-Based Navigation With Language-Based Assistance via Imitation Learning With Indirect Intervention

Development of a Benchmark Corpus to Support Entity Recognition in Job Descriptions

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION


Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

The Tensor Networks Anthology: Simulation techniques for many-body quantum lattice systems

Signatures of few-body resonances in finite volume

EDRIXS: An open source toolkit for simulating spectra of resonant inelastic x-ray scattering

Exact diagonalization library for quantum electron models

On the role of rotation-vibration coupling in the spectra of ozone isotopomers

Superharmonic instability of stokes waves

lifex-ep: a robust and efficient software for cardiac electrophysiology simulations

An open tool based on lifex for myofibers generation in cardiac
  computational models

A partitioned shift-without-invert algorithm to improve parallel eigensolution efficiency in real-space electronic transport


Video and Image Analytics for Multiple Environments

2017 Robotic Instrument Segmentation Challenge


:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.

Corruption Risk in Contracting Markets: A Network Science Perspective

(Almost) All of Entity Resolution

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)

Exploratory Data Analysis and Classification of a New Arabic Online Extremism Dataset

Accelerating Column Generation via Flexible Dual Optimal Inequalities with Application to Entity Resolution

Integrating Historical Person Registers as Linked Open Data in the WarSampo Knowledge Graph

Ground Truth Inference for Weakly Supervised Entity Matching

Do Communities in Developer Interaction Networks align with Subsystem Developer Teams? An Empirical Study of Open Source Systems

Multilingual Named Entity Recognition and Matching Using BERT and Dedupe for Slavic Languages

Workshop on Balto-Slavic Natural Language Processing

Semantic Systems. In the Era of Knowledge Graphs: 16th International Conference on Semantic Systems, SEMANTiCS 2020, Amsterdam, The Netherlands, September 7–10, 2020, Proceedings


LMDeploy is a toolkit for compressing, deploying, and serving LLMs.

AWQ: Activation-aware Weight Quantization for LLM Compression and
  Acceleration

Towards Efficient Generative Large Language Model Serving: A Survey from
  Algorithms to Systems


A general-purpose probabilistic programming system with programmable inference

Automating Involutive MCMC using Probabilistic and Differentiable Programming.

Using probabilistic programs as proposals

Deep Involutive Generative Models for Neural MCMC

DynamicPPL: Stan-like Speed for Dynamic Probabilistic Models

Effect Handlers for Programmable Inference


Components for building WoT devices or for interacting with them over various IoT protocols

Governance of Autonomous Agents on the Web: Challenges and Opportunities

Securing SDN-Based IoT Group Communication

Relativistic Digital Twin: Bringing the IoT to the Future


Time series forecasting with PyTorch

DeepAR: Probabilistic Forecasting with Autoregressive Recurrent Networks

Temporal Fusion Transformers for Interpretable Multi-horizon Time Series Forecasting

N-BEATS: Neural basis expansion analysis for interpretable time series forecasting

Darts: User-Friendly Modern Machine Learning for Time Series

N-HiTS: Neural Hierarchical Interpolation for Time Series Forecasting

Collective variable discovery in the age of machine learning: reality, hype and everything in between

Graph Deep Learning for Time Series Forecasting

A Survey of Deep Learning and Foundation Models for Time Series Forecasting


An implementation of a deep learning recommendation model (DLRM)

Deep Learning Recommendation Model for Personalization and Recommendation Systems

The Architectural Implications of Facebook's DNN-based Personalized Recommendation

ADAHESSIAN: An Adaptive Second Order Optimizer for Machine Learning

Compositional Embeddings Using Complementary Partitions for Memory-Efficient Recommendation Systems

Mixed Dimension Embeddings with Application to Memory-Efficient Recommendation Systems

Deep Learning Training in Facebook Data Centers: Design of Scale-up and Scale-out Systems.

Optimizing Deep Learning Recommender Systems Training on CPU Cluster Architectures

RecShard: statistical feature-based memory optimization for industry-scale neural recommendation

Learning-Rate-Free Learning by D-Adaptation

Tensor Casting: Co-Designing Algorithm-Architecture for Personalized Recommendation Training


Model Evaluation Tools

East Asia Reanalysis System (EARS)

Assessment of the data assimilation framework for the Rapid Refresh Forecast System v0.1 and impacts on forecasts of a convective storm case study

Using feature-based verification methods to explore the spatial and temporal characteristics of the 2019 chlorophyll-a bloom season in a model of the European Northwest Shelf


Deep Residual Learning for Image Recognition

ImageNet classification with deep convolutional neural networks

Attention Is All You Need

Very Deep Convolutional Networks for Large-Scale Image Recognition

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

U-Net: Convolutional Networks for Biomedical Image Segmentation

Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks

Going Deeper with Convolutions

Fully Convolutional Networks for Semantic Segmentation

Generative Adversarial Networks


P4 language tutorials

Heavy-Hitter Detection Entirely in the Data Plane

A Survey on Data Plane Programming with P4: Fundamentals, Advances, and
  Applied Research

P4-IPsec: Site-to-Site and Host-to-Site VPN with IPsec in P4-Based SDN

LAMP: Prompt Layer 7 Attack Mitigation with Programmable Data Planes

PROCEEDINGS OF THE 2018 SYMPOSIUM ON ARCHITECTURES FOR NETWORKING AND COMMUNICATIONS SYSTEMS (ANCS '18)

Shortcutting Fast Failover Routes in the Data Plane

Symposium on Architectures for Networking and Communications Systems

P4-IPsec: Implementation of IPsec Gateways in P4 with SDN Control for Host-to-Site Scenarios


Download and process satellite imagery in Python using Sentinel Hub services.

APPLICATION OF TEMPORAL CONVOLUTIONAL NEURAL NETWORK FOR THE CLASSIFICATION OF CROPS ON SENTINEL-2 TIME SERIES

The international archives of the photogrammetry, remote sensing and spatial information sciences/International archives of the photogrammetry, remote sensing and spatial information sciences


TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

Masked Autoencoders Are Scalable Vision Learners

Hierarchical Text-Conditional Image Generation with CLIP Latents

BLIP-2: Bootstrapping Language-Image Pre-training with Frozen Image
  Encoders and Large Language Models

Align before Fuse: Vision and Language Representation Learning with Momentum Distillation

CoCa: Contrastive Captioners are Image-Text Foundation Models

MDETR -- Modulated Detection for End-to-End Multi-Modal Understanding

Masked Autoencoders that Listen

OmniVL:One Foundation Model for Image-Language and Video-Language Tasks

LAVIS: A One-stop Library for Language-Vision Intelligence

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 3: System Demonstrations)


Ignis (deprecated) provides tools for quantum hardware verification, noise characterization, and error correction.

Software Mitigation of Crosstalk on Noisy Intermediate-Scale Quantum Computers

TWENTY-FIFTH INTERNATIONAL CONFERENCE ON ARCHITECTURAL SUPPORT FOR PROGRAMMING LANGUAGES AND OPERATING SYSTEMS (ASPLOS XXV)

Challenges and Opportunities of Near-Term Quantum Computing Systems

Bell Diagonal and Werner State Generation: Entanglement, Non-Locality, Steering and Discord on the IBM Quantum Computer

Let Each Quantum Bit Choose Its Basis Gates

Support Vector Machines on Noisy Intermediate Scale Quantum Computers

Fast quantum state reconstruction via accelerated non-convex programming

Dealing with quantum computer readout noise through high energy physics
  unfolding methods


R Interface to Keras

DeepTriangle: A Deep Learning Approach to Loss Reserving

Semantic Segmentation Deep Learning for Extracting Surface Mine Extents from Historic Topographic Maps

Machine-learning-based prediction models for high-need high-cost patients using nationwide clinical and claims data

Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Unveiling the nuclear matter EoS from neutron star properties: a supervised machine learning approach

Journal of Cosmology and Astroparticle Physics

Regional Mapping and Spatial Distribution Analysis of Canopy Palms in an Amazon Forest Using Deep Learning and VHR Images

Sparse Convolutional Neural Networks for Genome-Wide Prediction

Forecasting in Blockchain-based Local Energy Markets

Convolutional Support Vector Models: Prediction of Coronavirus Disease Using Chest X-rays

Hierarchically Decoupled Spatial-Temporal Contrast for Self-supervised Video Representation Learning


jMetal: a framework for multi-objective optimization with metaheuristics

jMetalPy: a Python Framework for Multi-Objective Optimization with Metaheuristics

Merge Nondominated Sorting Algorithm for Many-Objective Optimization

Machine Learning and Data Analytics for Design and Manufacturing of High-Entropy Materials Exhibiting Mechanical or Fatigue Properties of Interest

A Novel Self-Adaptive Mixed-Variable Multiobjective Ant Colony Optimization Algorithm in Mobile Edge Computing

Rank-based Non-dominated Sorting


Paddle Multimodal Integration and eXploration, supporting mainstream multi-modal tasks, including end-to-end large-scale multi-modal pretrain models and diffusion model toolbox. Equipped with high performance and flexibility.

CoCa: Contrastive Captioners are Image-Text Foundation Models

Grounding DINO: Marrying DINO with Grounded Pre-Training for Open-Set
  Object Detection

EVA: Exploring the Limits of Masked Visual Representation Learning at Scale

EVA-CLIP: Improved Training Techniques for CLIP at Scale

All are Worth Words: A ViT Backbone for Diffusion Models

EVA-02: A Visual Representation for Neon Genesis


[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

NiftyNet: a deep-learning platform for medical imaging

Computer methods and programs in biomedicine

Automatic Brain Tumor Segmentation Based on Cascaded Convolutional Neural Networks With Uncertainty Estimation

Clinical implementation of MRI-based organs-at-risk auto-segmentation with convolutional networks for prostate radiotherapy

pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis

Code Smells in Machine Learning Systems

An Overview of Open Source Deep Learning-Based Libraries for Neuroscience


library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization

A parallel global multiobjective framework for optimization: pagmo

Profiling the genome-wide landscape of tandem repeat expansions

DexPilot: Vision-Based Teleoperation of Dexterous Robotic Hand-Arm System

Strategies for solving the Fermi-Hubbard model on near-term quantum computers

2SXPS: An Improved and Expanded Swift X-Ray Telescope Point-source Catalog

The Astrophysical journal. Supplement series/Astrophysical journal. Supplement series

XACC: A System-Level Software Infrastructure for Heterogeneous
  Quantum-Classical Computing

pyOptSparse: A Python framework for large-scale constrained nonlinear optimization of sparse systems

Multistart Methods for Quantum Approximate optimization

IEEE High Performance Extreme Computing Conference

MADER: Trajectory Planner in Multi-Agent and Dynamic Environments

Skyrmion Crystal from RKKY Interaction Mediated by 2D Electron Gas


Tools for ggplot2 scales

Leaf shape in Populus tremula is a complex, omnigenic trait

rigrag: high-resolution mapping of genic targeting preferences during HIV-1 integration in vitro and in vivo

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions

Multiple decrement life tables of Cephus cinctus Norton (Hymenoptera: Cephidae) across a set of barley cultivars: The importance of plant defense versus cannibalism

Hunter-gatherer admixture facilitated natural selection in Neolithic European farmers

Environmental Controls of Size Distribution of Modern Planktonic Foraminifera in the Tropical Indian Ocean


Simulate genealogical trees and genomic sequence data using population genetic models

Efficient ancestry and mutation simulation with msprime 1.0

Sweepstakes reproductive success via pervasive and recurrent selective sweeps

Coalescent Simulation with msprime

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets


Open source drivers for the Kinect for Windows v2 device

Calibrate Multiple Consumer RGB-D Cameras for Low-Cost and Efficient 3D Indoor Mapping

Pulse Based Time-of-Flight Range Sensing

mRI: Multi-modal 3D Human Pose Estimation Dataset using mmWave, RGB-D,
  and Inertial Sensors

3D Measurement of Large Deformations on a Tensile Structure during Wind Tunnel Tests Using Microsoft Kinect V2

A Multiple-View Geometric Model for Specularity Prediction on General
  Curved Surfaces


An adaptive and distributed-memory parallel implementation of the immersed boundary (IB) method

Hybrid finite difference/finite element immersed boundary method

Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour

Proceedings. Mathematical, physical, and engineering sciences

Hydrodynamics of suspensions of passive and active rigid particles: a rigid multiblob approach

Communications in applied mathematics and computational science

A robust incompressible Navier-Stokes solver for high density ratio multiphase flows

A coupled mitral valve—left ventricle model with fluid–structure interaction

A DLM immersed boundary method based wave-structure interaction solver for high density ratio multiphase flows

Study of cardiovascular function using a coupled left ventricle and systemic circulation model

An immersed interface method for discrete surfaces

IB2d: a Python and MATLAB implementation of the immersed boundary method

Carolina Digital Repository (University of North Carolina at Chapel Hill)

An Immersed Boundary method with divergence-free velocity interpolation and force spreading


Carbon-Aware SDK

A Testbed for Carbon-Aware Applications and Systems


SoftVC VITS Singing Voice Conversion

The Singing Voice Conversion Challenge 2023

CoMoSVC: Consistency Model-based Singing Voice Conversion

SingVisio: Visual Analytics of Diffusion Model for Singing Voice
  Conversion

Detecting Voice Cloning Attacks via Timbre Watermarking

FSD: An Initial Chinese Dataset for Fake Song Detection

BiSinger: Bilingual Singing Voice Synthesis

SingFake: Singing Voice Deepfake Detection


Fuzzy String Matching in Python

Large-scale investigation of the reasons why potentially important genes are ignored

The Privacy Policy Landscape After the GDPR

Learning Contextual Representations for Semantic Parsing with Generation-Augmented Pre-Training

PLSDB: advancing a comprehensive database of bacterial plasmids

Firebird: Predicting Fire Risk and Prioritizing Fire Inspections in Atlanta

On the Potential of Lexico-logical Alignments for Semantic Parsing to SQL Queries

Studying health-related internet and mobile device use using web logs and smartphone records

Shades of BLEU, Flavours of Success: The Case of MultiWOZ

An End-to-end Point of Interest (POI) Conflation Framework

Using data science to understand the film industry’s gender gap


A hyperparameter optimization framework

Optuna: A Next-generation Hyperparameter Optimization Framework

AutoML to Date and Beyond: Challenges and Opportunities

TabLLM: Few-shot Classification of Tabular Data with Large Language
  Models

An empirical comparison of neural networks and machine learning algorithms for EEG gait decoding

CleanML: A Study for Evaluating the Impact of Data Cleaning on ML Classification Tasks

Fast and Accurate Network Embeddings via Very Sparse Random Projection

Graph Warp Module: an Auxiliary Module for Boosting the Power of Graph Neural Networks in Molecular Graph Analysis

Multiplex Heterogeneous Graph Convolutional Network

Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining

Neural graph embeddings as explicit low-rank matrix factorization for link prediction

Text Categorization by Learning Predominant Sense of Words as Auxiliary Task

Meeting of the Association for Computational Linguistics


Apache Lucene and Solr open-source search software

A Manually-Curated Dataset of Fixes to Vulnerabilities of Open-Source Software

Indic-Transformers: An Analysis of Transformer Language Models for Indian Languages.

Native Language Identification using Stacked Generalization

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Database : the journal of biological databases and curation

Native Language Identification With Classifier Stacking and Ensembles

International Conference on Computational Logic

Understanding Heart-Failure Patients EHR Clinical Features via SHAP Interpretation of Tree-Based Machine Learning Model Predictions

Norwegian Native Language Identification

Recent Advances in Natural Language Processing

SMDT: Selective Memory-Augmented Neural Document Translation


Earth observation processing framework for machine learning in Python

Tree Species Mapping on Sentinel-2 Satellite Imagery with Weakly Supervised Classification and Object-Wise Sampling

APPLICATION OF TEMPORAL CONVOLUTIONAL NEURAL NETWORK FOR THE CLASSIFICATION OF CROPS ON SENTINEL-2 TIME SERIES

FASTENER Feature Selection for Inference from Earth Observation Data

A DEEP LEARNING APPROACH FOR CROP TYPE MAPPING BASED ON COMBINED TIME SERIES OF SATELLITE AND WEATHER DATA


Packet Test Framework

Gauntlet: Finding Bugs in Compilers for Programmable Packet Processing

P4 Switch Code Data Flow Analysis: Towards Stronger Verification of Forwarding Plane Software

Network Operations and Management Symposium

P4Testgen: An Extensible Test Oracle For P4

P4-KBR: A Key-Based Routing System for P4-Programmable Networks


Ontop is a platform to query relational databases as Virtual RDF Knowledge Graphs using SPARQL

Declarative RDF graph generation from heterogeneous (semi-)structured data: A systematic literature review

Will Dependency Conflicts Affect My Program's Semantics?

Enhancing virtual ontology based access over tabular data with Morph-CSV

Formal Description and Automatic Generation of Learning Spaces Based on Ontologies

The Query Translation Landscape: a Survey

How to Stay Ontop of Your Data: Databases, Ontologies and More

SEMANTIC WEB: ESWC 2015 SATELLITE EVENTS

OBDA for the Web: Creating Virtual RDF Graphs On Top of Web Data Sources

Enhancing OBDA Query Translation over Tabular Data with Morph-CSV.

Database Concepts in a Domain Ontology

Information Technology and Management Science

Seeing the whole picture: integrated pre-surgery reports with PreOptique


Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R

NeuralPDE: Automating Physics-Informed Neural Networks (PINNs) with
  Error Approximations

Faster Policy Learning with Continuous-Time Gradients

Parallelizing Explicit and Implicit Extrapolation Methods for Ordinary Differential Equations

Differential methods for assessing sensitivity in biological models


Advanced Normalization Tools (ANTs)

The Insight ToolKit image registration framework

A large-scale comparison of cortical thickness and volume methods for measuring Alzheimer's disease severity

Whole-central nervous system functional imaging in larval Drosophila

A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region

Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network

SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images

T1-weighted in vivo human whole brain MRI dataset with an ultrahigh isotropic resolution of 250 μm

A probabilistic atlas of the basal ganglia using 7 T MRI

The pediatric template of brain perfusion

Resolving laminar activation in human V1 using ultra-high spatial resolution fMRI at 7T


Annotated data.

SCANPY: large-scale single-cell gene expression data analysis

Single-cell RNA-seq denoising using a deep count autoencoder

anndata: Annotated data

A fast, scalable and versatile tool for analysis of single-cell omics data


Core Python Web Archiving Toolkit for replay and recording of web archives

MementoMap Framework for Flexible and Adaptive Web Archive Profiling

Exploring the Dominance of the English Language on the Websites of EU Countries

The Case For Alternative Web Archival Formats To Expedite The Data-To-Insight Cycle

ACM/IEEE Joint Conference on Digital Libraries

From archive to analysis: accessing web archives at scale through a cloud-based interface

International journal of digital humanities

Collecting 16K archived web pages from 17 public web archives

Right HTML, Wrong JSON: Challenges in Replaying Archived Webpages Built with Client-Side Rendering

Making Changes in Webpages Discoverable: A Change-Text Search Interface for Web Archives

BESOCIAL: A Sustainable Knowledge Graph-Based Workflow for Social Media Archiving

Impact of HTTP Cookie Violations in Web Archives


Pipeline components for real-time phylodynamic analysis

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies

bioRxiv : the preprint server for biology

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater

medRxiv : the preprint server for health sciences

Transmission of SARS-CoV-2 from humans to animals and potential host adaptation

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Real-time tracking of Tomato brown rugose fruit virus (ToBRFV) outbreaks in the Netherlands using Nextstrain

Betacoronavirus Genomes: How Genomic Information has been Used to Deal with Past Outbreaks and the COVID-19 Pandemic

International journal of molecular sciences

Genomic Variations in SARS-CoV-2 Genomes From Gujarat: Underlying Role of Variants in Disease Epidemiology

SARS-CoV-2 mutation 614G creates an elastase cleavage site enhancing its spread in high AAT-deficient regions

Prospective Longitudinal Serosurvey of Healthcare Workers in the First Wave of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pandemic in a Quaternary Care Hospital in Munich, Germany

Clinical infectious diseases/Clinical infectious diseases (Online. University of Chicago. Press)


Multiresolution Adaptive Numerical Environment for Scientific Simulation

MADNESS: A Multiresolution, Adaptive Numerical Environment for Scientific Simulation

Scalable task-based algorithm for multiplication of block-rank-sparse matrices

Irregular Applications: Architectures and Algorithms

Study and evaluation of improved automatic GPU offloading method

International journal of parallel, emergent and distributed systems

Task-Based Algorithm for Matrix Multiplication: A Step Towards Block-Sparse Tensor Computing

Combining Pseudopotential and All Electron Density Functional Theory for the Efficient Calculation of Core Spectra Using a Multiresolution Approach

The journal of physical chemistry. A/The journal of physical chemistry. A.

Fast quantum algorithm for differential equations


Library for training machine learning models with privacy for training data

Neural Program Synthesis with Priority Queue Training

Semi-supervised Knowledge Transfer for Deep Learning from Private Training Data

The Secret Sharer: Evaluating and Testing Unintended Memorization in Neural Networks

Evaluating Differentially Private Machine Learning in Practice

Differential Privacy Has Disparate Impact on Model Accuracy

Machine Learning in Python: Main developments and technology trends in
  data science, machine learning, and artificial intelligence

Membership Inference Attacks From First Principles

MemGuard: Defending against Black-Box Membership Inference Attacks via Adversarial Examples

Differentially Private Model Publishing for Deep Learning

Federated Learning and Differential Privacy: Software tools analysis, the Sherpa.ai FL framework and methodological guidelines for preserving data privacy


Specifications of SAM/BAM and related high-throughput sequencing file formats

Twelve years of SAMtools and BCFtools

Nanopore sequencing and assembly of a human genome with ultra-long reads

GA4GH: International policies and standards for data sharing across genomic research and healthcare

VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia

GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

A photosynthesis operon in the chloroplast genome drives speciation in evening primroses


Reduce the environmental footprint of your software applications with this cutting-edge sonarQube plugin

Energy-Saving Strategies for Mobile Web Apps and their Measurement: Results from a Decade of Research


Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

Towards Implementation of OMOP in a German University Hospital Consortium

A new paradigm for accelerating clinical data science at Stanford
  Medicine

The natural history of symptomatic COVID-19 during the first wave in Catalonia

Increasing trust in real-world evidence through evaluation of observational data quality

A Comparison of Data Quality Assessment Checks in Six Data Sharing Networks

eGEMs (Generating Evidence & Methods to improve patient outcomes)

The natural history of symptomatic COVID-19 in Catalonia, Spain: a multi-state model including 109,367 outpatient diagnoses, 18,019 hospitalisations, and 5,585 COVID-19 deaths among 5,627,520 people

Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study

Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository

ReDWINE: A Clinical Datamart with Text Analytical Capabilities to Facilitate Rehabilitation Research

An Extract-Transform-Load Process Design for the Incremental Loading of German Real-World Data Based on FHIR and OMOP CDM: Algorithm Development and Validation


Implementation of SYCL and C++ standard parallelism for CPUs and GPUs from all vendors: The independent, community-driven compiler for C++-based heterogeneous programming models. Lets applications adapt themselves to all the hardware in the system - even at runtime!

Accelerated Neural Networks on OpenCL Devices Using SYCL-DNN

Proceedings of the International Workshop on OpenCL

High-speed turbulent flows towards the exascale: STREAmS-2 porting and
  performance

Code Generation from Simulink Models with Task and Data Parallelism

International journal of computer and technology


Variational Quantum Circuit Simulator for Quantum Computation Research

Yao.jl: Extensible, Efficient Framework for Quantum Algorithm Design

Estimating the gradient and higher-order derivatives on quantum hardware

Quantum Long Short-Term Memory

Qibo: a framework for quantum simulation with hardware acceleration

Orbital optimized unitary coupled cluster theory for quantum computer

Theory of analytical energy derivatives for the variational quantum eigensolver

Jastrow-type Decomposition in Quantum Chemistry for Low-Depth Quantum Circuits

Journal of chemical theory and computation

Calculation of the Green's function on near-term quantum computers

TEQUILA: a platform for rapid development of quantum algorithms

A feasible approach for automatically differentiable unitary coupled-cluster on quantum computers


Facebook AI Performance Evaluation Platform

Single-Path NAS: Designing Hardware-Efficient ConvNets in less than 4 Hours

ChamNet: Towards Efficient Network Design through Platform-Aware Model Adaptation

EmBench: Quantifying Performance Variations of Deep Neural Networks across Modern Commodity Devices

The 3rd International Workshop on Deep Learning for Mobile Systems and Applications

2018 Low-Power Image Recognition Challenge

Single-Path Mobile AutoML: Efficient ConvNet Design and NAS Hyperparameter Optimization

Non-Autoregressive Semantic Parsing for Compositional Task-Oriented Dialog

The Design and Implementation of a Scalable Deep Learning Benchmarking Platform

International Conference on Cloud Computing

MLModelScope: A Distributed Platform for ML Model Evaluation and Benchmarking at Scale


A generic framework for on-demand, incrementalized computation. Inspired by adapton, glimmer, and rustc's query system.

Tydi-lang: A Language for Typed Streaming Hardware

The genome sequence of the Common Carder Bee, Bombus pascuorum (Scopoli, 1763)

An Intermediate Representation for Composable Typed Streaming Dataflow
  Designs

A Toolchain for Streaming Dataflow Accelerator Designs for Big Data
  Analytics: Defining an IR for Composable Typed Streaming Dataflow Designs


Working draft of the proposed RISC-V V vector extension

Ara: A 1-GHz+ Scalable and Energy-Efficient RISC-V Vector Processor With Multiprecision Floating-Point Support in 22-nm FD-SOI

Snitch: A Tiny Pseudo Dual-Issue Processor for Area and Energy Efficient Execution of Floating-Point Intensive Workloads

A ''New Ara'' for Vector Computing: An Open Source Highly Efficient
  RISC-V V 1.0 Vector Processor Design

Vitruvius+: An Area-Efficient RISC-V Decoupled Vector Coprocessor for High Performance Computing Applications

ACM transactions on architecture and code optimization

A Low-Power Transprecision Floating-Point Cluster for Efficient Near-Sensor Data Analytics

dCSR: A Memory-Efficient Sparse Matrix Representation for Parallel Neural Network Inference

Vortex: OpenCL Compatible RISC-V GPGPU

Short Reasons for Long Vectors in HPC CPUs: A Study Based on RISC-V

Sparq: A Custom RISC-V Vector Processor for Efficient Sub-Byte Quantized Inference


A guidance language for controlling large language models.

Chain-of-Thought Prompting Elicits Reasoning in Large Language Models

Sparks of Artificial General Intelligence: Early experiments with GPT-4

Automatic Chain of Thought Prompting in Large Language Models

AutoGen: Enabling Next-Gen LLM Applications via Multi-Agent Conversation

ART: Automatic multi-step reasoning and tool-use for large language
  models

Cognitive Architectures for Language Agents

Cumulative Reasoning with Large Language Models

Are Large Language Model-based Evaluators the Solution to Scaling Up
  Multilingual Evaluation?

MechGPT, a language-based strategy for mechanics and materials modeling
  that connects knowledge across scales, disciplines and modalities

Bring Your Own Data! Self-Supervised Evaluation for Large Language
  Models


The efficient SMT-based context-bounded model checker (ESBMC)

A New Era in Software Security: Towards Self-Healing Software via Large
  Language Models and Formal Verification

ESBMC: Scalable and Precise Test Generation based on the Floating-Point Theory

Combining BMC and Fuzzing Techniques for Finding Software Vulnerabilities in Concurrent Programs

ESBMC-CHERI: towards verification of C programs for CHERI platforms with ESBMC

Proceedings of the 31st ACM SIGSOFT International Symposium on Software Testing and Analysis

Verifying Software Vulnerabilities in IoT Cryptographic Protocols

Verifying Security Vulnerabilities in Large Software Systems using
  Multi-Core k-Induction

ESBMC v7.3: Model Checking C++ Programs using Clang AST


Official release of InternLM2 7B and 20B base and chat models. 200K context support

Qwen Technical Report

WizardMath: Empowering Mathematical Reasoning for Large Language Models
  via Reinforced Evol-Instruct

AgentBench: Evaluating LLMs as Agents

LongBench: A Bilingual, Multitask Benchmark for Long Context
  Understanding

InternLM-XComposer: A Vision-Language Large Model for Advanced
  Text-image Comprehension and Composition

Shadow Alignment: The Ease of Subverting Safely-Aligned Language Models

Scaling Relationship on Learning Mathematical Reasoning with Large
  Language Models

PointLLM: Empowering Large Language Models to Understand Point Clouds

Q-Instruct: Improving Low-level Visual Abilities for Multi-modality
  Foundation Models

InternLM-XComposer2: Mastering Free-form Text-Image Composition and
  Comprehension in Vision-Language Large Model


Earthdata Search is a web application developed by NASA EOSDIS to enable data discovery, search, comparison, visualization, and access across EOSDIS' Earth Science data holdings.


The Ethereum Wiki

Bitcoin-NG: A Scalable Blockchain Protocol

Blockchain distributed ledger technologies for biomedical and health care applications

Journal of the American Medical Informatics Association : JAMIA

Untangling Blockchain: A Data Processing View of Blockchain Systems

BLOCKBENCH: A Framework for Analyzing Private Blockchains

A Survey on Consensus Mechanisms and Mining Strategy Management in Blockchain Networks

An overview on smart contracts: Challenges, advances and platforms

A Survey of Distributed Consensus Protocols for Blockchain Networks

IEEE Communications surveys and tutorials/IEEE communications surveys and tutorials

ContractFuzzer: Fuzzing Smart Contracts for Vulnerability Detection

PROCEEDINGS OF THE 2018 33RD IEEE/ACM INTERNATIONAL CONFERENCE ON AUTOMTED SOFTWARE ENGINEERING (ASE' 18)

Blockchain Based Decentralized Management of Demand Response Programs in Smart Energy Grids

Hijacking Bitcoin: Routing Attacks on Cryptocurrencies


An advanced Twitter scraping & OSINT tool written in Python that doesn't use Twitter's API, allowing you to scrape a user's followers, following, Tweets and more while evading most API limitations.

A novel fusion-based deep learning model for sentiment analysis of COVID-19 tweets

Exploring public perceptions of the COVID-19 vaccine online from a cultural perspective: Semantic network analysis of two social media platforms in the United States and China

From Twitter to Traffic Predictor: Next-Day Morning Traffic Prediction Using Social Media Data

Winds of Change: Impact of COVID-19 on Vaccine-related Opinions of
  Twitter users

SenWave: Monitoring the Global Sentiments under the COVID-19 Pandemic

Demographics and topics impact on the co-spread of COVID-19 misinformation and fact-checks on Twitter

L3Cube-HingCorpus and HingBERT: A Code Mixed Hindi-English Dataset and
  BERT Language Models

Correction to: Disinformation in Open Online Media

Multidisciplinary International Symposium on Disinformation in Open Online Media

DEPTWEET: A typology for social media texts to detect depression severities

Rise and fall of the global conversation and shifting sentiments during the COVID-19 pandemic

Humanities and Social Sciences Communications


Programmable CUDA/C++ GPU Graph Analytics

GraphR: Accelerating Graph Processing Using ReRAM

Multi-GPU Graph Analytics

Characterizing and Detecting CUDA Program Bugs

SURF: Direction-Optimizing Breadth-First Search Using Workload State on GPUs

BOBA: A Parallel Lightweight Graph Reordering Algorithm with Heavyweight
  Implications


Repository for the code of the Open Energy Platform (OEP) website. The OEP provides an interface to the Open Energy Family


TEASER - Tool for Energy Analysis and Simulation for Efficient Retrofit

TEASER: an open tool for urban energy modelling of building stocks

Journal of building performance simulation

Flexible Electricity Use for Heating in Markets with Renewable Energy

Connecting Dynamic Heat Demands of Buildings with Borehole Heat Exchanger Simulations for Realistic Monitoring and Forecast


Workflow Description Language - Specification and Implementations

A simple guide to de novo transcriptome assembly and annotation

Unifying package managers, workflow engines, and containers: Computational reproducibility with BioNix

A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways

A comprehensive genomic and transcriptomic dataset of triple-negative breast cancers

Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale

Accelerating bioinformatics implementation in public health

Evaluation of tools for describing, reproducing and reusing scientific
  workflows

Ten simple rules for large-scale data processing

PLOS computational biology/PLoS computational biology


M.I.T General Circulation Model master code and documentation repository

Antarctic Sea Ice Control on the Depth of North Atlantic Deep Water

Dynamic Europa ocean shows transient Taylor columns and convection driven by ice melting and salinity

Impact of icebergs on the seasonal submarine melt of Sermeq Kujalleq

Limited Impact of Thwaites Ice Shelf on Future Ice Loss From Antarctica

Attractors and bifurcation diagrams in complex climate models


A scientific software for the numerical simulation of seismic wave phenomena and earthquake dynamics

Stress, rigidity and sediment strength control megathrust earthquake and tsunami dynamics

Linked 3-D modelling of megathrust earthquake-tsunami events: from subduction to tsunami run up

Yet Another Tensor Toolbox for Discontinuous Galerkin Methods and Other Applications

ACM transactions on mathematical software

Broadband Dynamic Rupture Modeling With Fractal Fault Roughness, Frictional Heterogeneity, Viscoelasticity and Topography: The 2016 Mw 6.2 Amatrice, Italy Earthquake

The state of pore fluid pressure and 3D megathrust earthquake dynamics

Journal of geophysical research. Solid earth

Next-Generation Local Time Stepping for the ADER-DG Finite Element Method

How Does Thermal Pressurization of Pore Fluids Affect 3D Strike-Slip Earthquake Dynamics and Ground Motions?

The bulletin of the Seismological Society of America/Bulletin of the Seismological Society of America

Fault-size dependent fracture energy explains multi-scale seismicity and
  cascading earthquakes

Dueling dynamics of low-angle normal fault rupture with splay faulting and off-fault damage

Rapid 3D dynamic rupture modeling of the February 6, 2023,
  Kahramanmaraş, Turkey, M_W7.8 and M_W7.7 earthquake doublet


Framework for lifting x86, amd64, aarch64, sparc32, and sparc64 program binaries to LLVM bitcode

A Survey of Binary Code Similarity

SoK: All You Ever Wanted to Know About x86/x64 Binary Disassembly But Were Afraid to Ask

SATURN -- Software Deobfuscation Framework Based on LLVM

Same Coverage, Less Bloat: Accelerating Binary-only Fuzzing with Coverage-preserving Coverage-guided Tracing

Conference on Computer and Communications Security

Towards Automated Application-Specific Software Stacks

Large-scale Debloating of Binary Shared Libraries

liOS: Lifting iOS Apps for Fun and Profit

Towards Obfuscated Malware Detection for Low Powered IoT Devices

Representing LLVM-IR in a Code Property Graph

Proving LTL Properties of Bitvector Programs and Decompiled Binaries (Extended)


A little word cloud generator in Python

Leveraging Sparse Linear Layers for Debuggable Deep Networks

Characterizing COVID-19 Content Posted to TikTok: Public Sentiment and Response During the First Phase of the COVID-19 Pandemic

The Journal of adolescent health : official publication of the Society for Adolescent Medicine

Ontology-based venous thromboembolism risk assessment model developing from medical records

BMC medical informatics and decision making

From free text to clusters of content in health records: an unsupervised graph partitioning approach

Extracting representations of cognition across neuroimaging studies improves brain decoding

LX-LR4DistSemEval: a collection of language resources for the evaluation of distributional semantic models of Portuguese

Revista da Associação Portuguesa de Linguística

Sharing emotions at scale: The Vent dataset

Learning to share by masking the non-shared for multi-domain sentiment classification

The first large scale collection of diverse Hausa language datasets

VidChapters-7M: Video Chapters at Scale


Gazebo classic. For the latest version, see https://github.com/gazebosim/gz-sim

A Survey on Human-aware Robot Navigation

An Optimization-Based Motion Planner for Car-like Logistics Robots on Narrow Roads

An Overview of the Drone Open-Source Ecosystem.

Using Affect as a Communication Modality to Improve Human-Robot Communication in Robot-Assisted Search and Rescue Scenarios


Production-Grade Container Scheduling and Management

Performance Evaluation of Microservices Architectures using Containers

About Microservices, Containers and their Underestimated Impact on Network Performance

Boundary-Aware Segmentation Network for Mobile and Web Applications

AiiDAlab – an ecosystem for developing, executing, and sharing scientific workflows

A Comprehensive Feature Comparison Study of Open-Source Container Orchestration Frameworks

Solving Large-Scale Granular Resource Allocation Problems Efficiently
  with POP

Smart Containers Schedulers for Microservices Provision in Cloud-Fog-IoT Networks. Challenges and Opportunities

Structured Allocation-Based Consistent Hashing With Improved Balancing for Cloud Infrastructure

IEEE transactions on parallel and distributed systems

Development of the CMS detector for the CERN LHC Run 3

On Byzantine fault tolerance in multi-master Kubernetes clusters


Python healpix maps tools

The Dark Energy Survey: Data Release 1

The Astrophysical journal. Supplement series/Astrophysical journal. Supplement series

Weak lensing for precision cosmology

Annual review of astronomy and astrophysics

Dark Energy Survey Year 1 Results: The Photometric Data Set for Cosmology

Stellar Streams Discovered in the Dark Energy Survey

The Dark Energy Survey Data Release 2

Planck intermediate results. LVII. Joint Planck LFI and HFI data processing

HAL (Le Centre pour la Communication Scientifique Directe)

Dark Energy Survey Year 3 Results: Photometric Data Set for Cosmology

NIFTY - Numerical Information Field Theory - a versatile Python library for signal inference

Cross-correlating Planck CMB lensing with SDSS: Lensing-lensing and galaxy-lensing cross-correlations

Monthly Notices of the Royal Astronomical Society

The meaning of WISE colours – I. The Galaxy and its satellites


TCP port scanner, spews SYN packets asynchronously, scanning entire Internet in under 5 minutes.

A Survey of Honeypots and Honeynets for Internet of Things, Industrial Internet of Things, and Cyber-Physical Systems

A Two-Fold Machine Learning Approach to Prevent and Detect IoT Botnet Attacks

LZR: Identifying Unexpected Internet Services

Spoki: Unveiling a New Wave of Scanners through a Reactive Network Telescope

Online Discoverability and Vulnerabilities of ICS/SCADA Devices in the Netherlands

Gotham Testbed: A Reproducible IoT Testbed for Security Experiments and Dataset Generation

Stratosphere: Finding Vulnerable Cloud Storage Buckets

Revista Metropolitana de Sustentabilidade (ISSN 2318-3233)

Improving type information inferred by decompilers with supervised
  machine learning

Democratizing LEO Satellite Network Measurement

XLBoost-Geo: An IP Geolocation System Based on Extreme Landmark Boosting.


LST prototype testbench chain

Physics Performance of the Large Size Telescope prototype of the Cherenkov Telescope Array

Deep-learning-driven event reconstruction applied to simulated data from a single Large-Sized Telescope of CTA

Camera Calibration of the CTA-LST prototype

Proceedings of 37th International Cosmic Ray Conference — PoS(ICRC2021)

Calibration and performance of the readout system based on switched capacitor arrays for the Large-Sized Telescope of the Cherenkov Telescope Array

Ground-based and Airborne Instrumentation for Astronomy VIII

LSTOSA: Onsite processing pipeline for the CTA Larged-Sized Telescope prototype

Full LST-1 data reconstruction with the use of convolutional neural
  networks


Draco is a library for compressing and decompressing 3D geometric meshes and point clouds. It is intended to improve the storage and transmission of 3D graphics.

V2VNet: Vehicle-to-Vehicle Communication for Joint Perception and Prediction

Implicit Neural Representations for Image Compression

VoxelContext-Net: An Octree based Framework for Point Cloud Compression

Dynamic Adaptive Point Cloud Streaming

Proceedings of the 23rd Packet Video Workshop

Variable Bitrate Neural Fields

MuSCLE: Multi Sweep Compression of LiDAR using Deep Entropy Models

Deep Implicit Volume Compression

Joint Communication and Computational Resource Allocation for QoE-driven Point Cloud Video Streaming

HUMAN4D: A Human-Centric Multimodal Dataset for Motions and Immersive Media

Textured Mesh Quality Assessment: Large-scale Dataset and Deep Learning-based Quality Metric


PINT is not TEMPO3 -- Software for high-precision pulsar timing

Relativistic Shapiro delay measurements of an extremely massive millisecond pulsar

A NICER View of PSR J0030+0451: Millisecond Pulsar Parameter Estimation

A repeating fast radio burst

A NICER View of the Massive Pulsar PSR J0740+6620 Informed by Radio Timing and XMM-Newton Spectroscopy

stingray: A modern Python library for spectral timing

Constraining the Neutron Star Mass-Radius Relation and Dense Matter Equation of State with NICER. I. The Millisecond Pulsar X-Ray Data Set

The NANOGrav 12.5 yr Data Set: Observations and Narrowband Timing of 47 Millisecond Pulsars

The NANOGrav 15 yr Data Set: Observations and Timing of 68 Millisecond Pulsars

A Potential Cyclotron Resonant Scattering Feature in the Ultraluminous X-Ray Source Pulsar NGC 300 ULX1 Seen by NuSTAR and XMM-Newton

PINT: A Modern Software Package for Pulsar Timing


CS infrastructure components for HPC applications

MFEM: a modular finite element methods library

Computers and Mathematics with Applications

Mapping Out the HPC Dependency Chaos


Library for specialized dense and sparse matrix operations, and deep learning primitives.

Anatomy of High-Performance Deep Learning Convolutions on SIMD Architectures

Fast Matrix-Free Evaluation of Discontinuous Galerkin Finite Element Operators

ACM transactions on mathematical software

Scalability of High-Performance PDE Solvers

ExaHyPE: An engine for parallel dynamically adaptive simulations of wave problems

Efficient Implementation of ADER Discontinuous Galerkin Schemes for a Scalable Hyperbolic PDE Engine

Optimizing Deep Learning Recommender Systems Training on CPU Cluster Architectures

The SpECTRE Cauchy-characteristic evolution system for rapid, precise
  waveform extraction

FFT Convolutions are Faster than Winograd on Modern CPUs, Here is Why

PolyDL: Polyhedral Optimizations for Creation of High Performance DL primitives

Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning Workloads


Hurricane Analysis and Forecast System


Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs

Siam R-CNN: Visual Tracking by Re-Detection

Efficient integration of heterogeneous single-cell transcriptomes using Scanorama

BBKNN: fast batch alignment of single cell transcriptomes

Efficient Algorithms for t-distributed Stochastic Neighborhood Embedding

Multilingual Universal Sentence Encoder for Semantic Retrieval

Visualizing Large-scale and High-dimensional Data

ANN-Benchmarks: A Benchmarking Tool for Approximate Nearest Neighbor Algorithms

Approximate Nearest Neighbor Search on High Dimensional Data — Experiments, Analyses, and Improvement

IEEE transactions on knowledge and data engineering

SpectralNet: Spectral Clustering using Deep Neural Networks


Owl - OCaml Scientific Computing @ https://ocaml.xyz

Automatic differentiation in machine learning: a survey

Owl: A General-Purpose Numerical Library in OCaml

Privacy-Preserving Personal Model Training

Distributed data analytics

Functional Design of Computation Graph


A toolbox for zkSNARKs on Ethereum

Blockchain-based Firmware Update Scheme Tailored for Autonomous Vehicles

Non-Interactive Zero-Knowledge for Blockchain: A Survey

Advancing Blockchain-based Federated Learning through Verifiable Off-chain Computations

ElectAnon: A Blockchain-Based, Anonymous, Robust and Scalable
  Ranked-Choice Voting Protocol

zkay v0.2: Practical Data Privacy for Smart Contracts

Trustworthy Pre-Processing of Sensor Data in Data On-chaining Workflows
  for Blockchain-based IoT Applications

Non-Disclosing Credential On-chaining for Blockchain-based Decentralized
  Applications

Short Paper: Design and Evaluation of Privacy-preserved Supply Chain System based on Public Blockchain.

Technology Review of Blockchain Data Privacy Solutions

ZKSENSE: A Friction-less Privacy-Preserving Human Attestation Mechanism for Mobile Devices

Proceedings on Privacy Enhancing Technologies


Python wrapper for tshark, allowing python packet parsing using wireshark dissectors

Privacy is What We Care About: Experimental Investigation of Federated Learning on Edge Devices

Tracing Your Smart-Home Devices Conversations: A Real World IoT Traffic Data-Set

Optimizing the Bluetooth Low Energy Service Discovery Process

ZLeaks: Passive Inference Attacks on Zigbee based Smart Homes

EyeSec: A Retrofittable Augmented Reality Tool for Troubleshooting Wireless Sensor Networks in the Field

Towards Characterizing IoT Software Update Practices


Publications from Trail of Bits

Manticore: A User-Friendly Symbolic Execution Framework for Binaries and Smart Contracts

SoK: Decentralized Finance (DeFi) Attacks

What are the Actual Flaws in Important Smart Contracts (and How Can We
  Find Them)?

Risk assessment at AGI companies: A review of popular risk assessment
  techniques from other safety-critical industries


Bartosz Milewski's 'Category Theory for Programmers' unofficial PDF and LaTeX source

An electrical engineering perspective on missed opportunities in computational physics.

On my favorite conventions for drawing the missing diagrams in Category Theory

The Quantum Monadology

FreeCHR: An Algebraic Framework for CHR-Embeddings


jiant is an nlp toolkit

GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding

SuperGLUE: A Stickier Benchmark for General-Purpose Language Understanding Systems

BERT Rediscovers the Classical NLP Pipeline

What do you learn from context? Probing for sentence structure in contextualized word representations

Fine-Tuning Pretrained Language Models: Weight Initializations, Data Orders, and Early Stopping

Sentence Encoders on STILTs: Supplementary Training on Intermediate Labeled-data Tasks

On the Stability of Fine-tuning BERT: Misconceptions, Explanations, and Strong Baselines

BLiMP: The Benchmark of Linguistic Minimal Pairs for English

A Survey on Data Augmentation for Text Classification

Assessing Social and Intersectional Biases in Contextualized Word Representations


A Python SDK for interacting with quantum devices on Amazon Braket

Mitiq: A software package for error mitigation on noisy quantum computers

qRobot: A Quantum Computing Approach in Mobile Robot Order Picking and Batching Problem Solver Optimization

Compiler Optimization for Quantum Computing Using Reinforcement Learning

QFaaS: A Serverless Function-as-a-Service Framework for Quantum
  Computing

Optimization of Robot-Trajectory Planning with Nature-Inspired and Hybrid Quantum Algorithms

A protocol for the use of cloud-based quantum computers for logical network analysis of biological systems


FaceChain is a deep-learning toolchain for generating your Digital-Twin.

FaceChain: A Playground for Human-centric Artificial Intelligence
  Generated Content


Multi-resolution ocean general circulation model.

Abrupt Climate and Weather Changes Across Time Scales

Scalability and some optimization of the Finite-volumE Sea ice-Ocean Model, Version 2.0 (FESOM2)

Simple algorithms to compute meridional overturning and barotropic streamfunctions on unstructured meshes

Nudging allows direct evaluation of coupled climate models with in situ observations: a case study from the MOSAiC expedition

The Impact of Different Atmospheric CO2 Concentrations on Large Scale Miocene Temperature Signatures

The Parareal Algorithm Applied to the FESOM 2 Ocean Circulation Model


BSD 4-Clause "Original" or "Old" License

WhisperX:  Automatic Speech Recognition with Word-level Timestamps (& Diarization)

Robust Speech Recognition via Large-Scale Weak Supervision

WhisperX: Time-Accurate Speech Transcription of Long-Form Audio


IntelliJ IDEA Community Edition & IntelliJ Platform

Does Technical Debt Lead to the Rejection of Pull Requests?

Authorship Attribution of Source Code: A Language-Agnostic Approach and
  Applicability in Software Engineering

On tracking Java methods with Git mechanisms

Journal of systems and software/The Journal of systems and software

The Strengths and Behavioral Quirks of Java Bytecode Decompilers

RefactorInsight: Enhancing IDE Representation of Changes in Git with Refactorings Information

Building Implicit Vector Representations of Individual Coding Style

Improving Testing Behavior by Gamifying IntelliJ

Semantics-driven extraction of timed automata from Java programs

Visualization of Methods Changeability Based on VCS Data

Together We Go Further: LLMs and IDE Static Analysis for Extract Method
  Refactoring


Mathematical Components

Competing Inheritance Paths in Dependent Type Theory: A Case Study in Functional Analysis

A Formalization of Convex Polyhedra Based on the Simplex Method

Validating Mathematical Structures

Deep Generation of Coq Lemma Names Using Elaborated Terms

Beyond Notations: Hygienic Macro Expansion for Theorem Proving Languages

A trustful monad for axiomatic reasoning with probability and nondeterminism

Extending Equational Monadic Reasoning with Monad Transformers

Reflexive tactics for algebra, revisited

Roosterize: Suggesting Lemma Names for Coq Verification Projects Using Deep Learning

Formalized functional analysis with semilinear maps