This repository is a tool for visualizing an agent RL process from a grid2op format. It was made though a partnership between RTE and Artelys for the different challengers of the L2RPN RL Challenge.

Learning to run a Power Network Challenge: a Retrospective Analysis

Towards an AI assistant for human grid operators

Towards an AI assistant for power grid operators

Fault Detection for agents on power grid topology optimization: A Comprehensive analysis


Fluid-Structure-Interaction / MHD Research Code. Relies on Fourier transforms for derivatives and the volume penalization method to include obstacles.

FluSI: A novel parallel simulation tool for flapping insect flight using a Fourier method with volume penalization

Aerodynamic Ground Effect in Fruitfly Sized Insect Takeoff

The dynamics of passive feathering rotation in hovering flight of bumblebees

Impact of turbulence on flying insects in tethered and free flight: High-resolution numerical experiments

Helical vortices generated by flapping wings of bumblebees

A mass-spring fluid-structure interaction solver: Application to flexible revolving wings

An experimental data-driven mass-spring model of flexible Calliphora wings

Fluid-structure interaction using volume penalization and mass-spring models with application to flapping bumblebee flight


An open-source toolbox for the evaluation of thermal response factors (g-functions) of geothermal borehole fields.


SED-fitting code for AGN and galaxies from a MCMC approach

AGNfitter: A BAYESIAN MCMC APPROACH TO FITTING SPECTRAL ENERGY DISTRIBUTIONS OF AGNs

Multi-wavelength Properties of Type 1 and Type 2 AGN Host Galaxies in the Chandra-COSMOS Legacy Survey

A Spectroscopic Follow-up Program of Very Massive Galaxies at 3 < z < 4: Confirmation of Spectroscopic Redshifts, and a High Fraction of Powerful AGNs

Evidence of under-developed torus and broad-line region of weak emission line quasars based on their spectral energy distribution


A high throughput sequence read  toolset using a streaming approach facilitated by Linux pipes

Cytokinin but not gibberellin application had major impact on the phenylpropanoid pathway in grape

A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery

Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria

Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation

Homeostatic plasticity fails at the intersection of autism-gene mutations and a novel class of common genetic modifiers

Serotype I and II Feline Coronavirus Replication and Gene Expression Patterns of Feline Cells—Building a Better Understanding of Serotype I FIPV Biology

Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections

Dual transcriptomic analysis reveals metabolic changes associated with differential persistence of human pathogenic bacteria in leaves of Arabidopsis and lettuce

Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris)

A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms


Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection

Machine learning assisted Bayesian model comparison: learnt harmonic mean estimator

Bayesian model comparison for simulation-based inference

Learned harmonic mean estimation of the marginal likelihood with normalizing flows

Learned harmonic mean estimation of the Bayesian evidence with
  normalizing flows

The future of cosmological likelihood-based inference: accelerated high-dimensional parameter estimation and model comparison


Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

A Compendium of Mutational Signatures of Environmental Agents

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

Tobacco smoking and somatic mutations in human bronchial epithelium

Somatic mutations and clonal dynamics in healthy and cirrhotic human liver

Clonal dynamics of haematopoiesis across the human lifespan

Mutational signatures of ionizing radiation in second malignancies

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

The longitudinal dynamics and natural history of clonal haematopoiesis

The genome as a record of environmental exposure


ValueNet: A Neural Text-to-SQL Architecture Incorporating Values

Towards Complex Text-to-SQL in Cross-Domain Database with Intermediate Representation

ValueNet: A Natural Language-to-SQL System that Learns from Database Information


A project written in Python to get old tweets, it bypass some limitations of Twitter Official API.

Attack of the Tails: Yes, You Really Can Backdoor Federated Learning

Analyzing the hate and counter speech accounts on Twitter

Evaluating the Impact of COVID-19 on Cyberbullying through Bayesian Trend Analysis

Public perception of COVID-19’s global health crisis on Twitter until 14 weeks after the outbreak

Coastal Tourism Spatial Planning at the Regional Unit: Identifying Coastal Tourism Hotspots Based on Social Media Data

ISPRS International Journal of Geo-Information

Ranking of Importance Measures of Tweet Communities: Application to Keyword Extraction From COVID-19 Tweets in Japan

IEEE transactions on computational social systems

A Neural Approach to Irony Generation

Get out of Church! The Case of #EmptyThePews: Twitter Hashtag between Resistance and Community

Semantic-based End-to-End Learning for Typhoon Intensity Prediction

TweetPap: A Dataset to Study the Social Media Discourse of Scientific Papers


SemEval2024-task8: Multidomain, Multimodel and Multilingual Machine-Generated Text Detection

M4: Multi-generator, Multi-domain, and Multi-lingual Black-Box Machine-Generated Text Detection

TextMachina: Seamless Generation of Machine-Generated Text Datasets

MasonTigers at SemEval-2024 Task 8: Performance Analysis of Transformer-based Models on Machine-Generated Text Detection

TrustAI at SemEval-2024 Task 8: A Comprehensive Analysis of Multi-domain
  Machine Generated Text Detection Techniques

AIpom at SemEval-2024 Task 8: Detecting AI-produced Outputs in M4


Download geospatial data from GISCO API - Eurostat


Side-Channel Analysis Library

Breaking Masked Implementations with Many Shares on 32-bit Software Platforms

IACR Transactions on Cryptographic Hardware and Embedded Systems

Improved Leakage-Resistant Authenticated Encryption based on Hardware AES Coprocessors

Rosita++: Automatic Higher-Order Leakage Elimination from Cryptographic Code

Riding the Waves Towards Generic Single-Cycle Masking in Hardware


python partial dependence plot toolbox

dalex: Responsible Machine Learning with Interactive Explainability and Fairness in Python

A Framework for Evaluating Post Hoc Feature-Additive Explainers

Model transparency and interpretability: survey and application to the insurance industry

Ensemble machine learning classification of daily living abilities among older people with HIV

Estimation and Interpretation of Machine Learning Models with Customized Surrogate Model

Interpretabilité des modèles : état des lieux des méthodes et application à l'assurance


Analysis of initial value ODE solvers

A purely hyperbolic discontinuous Galerkin approach for self-gravitating gas dynamics

Some notes on summation by parts time integration methods

Positivity-Preserving Adaptive Runge-Kutta Methods

Optimal Monotonicity-Preserving Perturbations of a Given Runge–Kutta Method

RK-Opt: A package for the design of numerical ODE solvers

NodePy: A package for the analysis of numerical ODE solvers


The Eldarica model checker

Exploring interpolants

Competition Report: CHC-COMP-21

Competition Report: CHC-COMP-20

Solving non-linear Horn clauses using a linear Horn clause solver

CHC-COMP 2022: Competition Report

Tree dimension in verification of constrained Horn clauses

Interpolating bit-vector formulas using uninterpreted predicates and Presburger arithmetic

Commutativity Simplifies Proofs of Parameterized Programs

A Theory of Heap for Constrained Horn Clauses (Extended Technical Report)

An encoding of array verification problems into array-free Horn clauses


Provides functions for hierarchical latent tree analysis on text data for hierarchical topic detection

Latent Tree Models for Hierarchical Topic Detection

Conformative Filtering for Implicit Feedback Data

A Novel Document Generation Process for Topic Detection Based on Hierarchical Latent Tree Models

Topic Browsing for Research Papers with Hierarchical Latent Tree Analysis

PWA-PEM for Latent Tree Model and Hierarchical Topic Detection

International Conference on Intelligent Information Processing


A integration approach of the LabStreamingLayer Framework for Unity3D

EEG alpha and theta signatures of socially and non-socially cued working memory in virtual reality

Social cognitive and affective neuroscience

Effects of virtual reality-based feedback on neurofeedback training performance—A sham-controlled study

A dataset of EEG recordings from 47 participants collected during a virtual reality working memory task where attention was cued by a social avatar and non-social stick cue

A method for synchronized use of EEG and eye tracking in fully immersive VR

A Comparison of Head Movement Classification Methods


A bioinformatics pipeline to analyze mtDNA from NGS data

Mitochondrial DNA depletion, mitochondrial mutations and high TFAM expression in hepatocellular carcinoma

Detection of Innate and Artificial Mitochondrial DNA Heteroplasmy by Massively Parallel Sequencing: Considerations for Analysis

The relevance of mitochondrial DNA variants fluctuation during reprogramming and neuronal differentiation of human iPSCs


API Client for Global Surface Summary of the Day (GSOD) Weather Data Client in R

GSODR: Global Summary Daily Weather Data in R


Python PDF parser for scientific publications: content and figures

Geographic Citation Gaps in NLP Research

PolyIE: A Dataset of Information Extraction from Polymer Material Scientific Literature

SurveyAgent: A Conversational System for Personalized and Efficient
  Research Survey

SciDoc2Diagrammer-MAF: Towards Generation of Scientific Diagrams from
  Documents guided by Multi-Aspect Feedback Refinement


Toolset for SV simulation, comparison and filtering

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

Parliament2: Accurate structural variant calling at scale

DangerTrack: A scoring system to detect difficult-to-assess regions

Gossypium purpurascens genome provides insight into the origin and domestication of upland cotton

Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel

Mapping crossover events of mouse meiotic recombination by restriction fragment ligation-based Refresh-seq


Repository for TweetEval

BERTweet: A pre-trained language model for English Tweets

TweetEval: Unified Benchmark and Comparative Evaluation for Tweet Classification

TimeLMs: Diachronic Language Models from Twitter

A Holistic Approach to Undesired Content Detection in the Real World

Multilingual Detection of Personal Employment Status on Twitter

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

A curated dataset for hate speech detection on social media text

Evaluation of OpenAI o1: Opportunities and Challenges of AGI

A Predictive Factor Analysis of Social Biases and Task-Performance in Pretrained Masked Language Models

NUAA-QMUL-AIIT at Memotion 3: Multi-modal Fusion with Squeeze-and-Excitation for Internet Meme Emotion Analysis

SMILE: Evaluation and Domain Adaptation for Social Media Language Understanding

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining


ENMTools R Package

Climate change and the future restructuring of Neotropical anuran biodiversity

Potential distributions of Bacillus anthracis and Bacillus cereus biovar anthracis causing anthrax in Africa

Potential migratory routes of Urania boisduvalii (Lepidoptera: Uraniidae) among host plant populations

Diversity and Distributions: A journal of biological invasions and biodiversity

Predicting Distribution of the Asian Longhorned Beetle, Anoplophora glabripennis (Coleoptera: Cerambycidae) and Its Natural Enemies in China

Modeling and mapping the habitat suitability and the potential distribution of Arboviruses vectors in Morocco

Climate change may induce connectivity loss and mountaintop extinction in Central American forests

Potentially suitable habitats of Daodi goji berry in China under climate change

Impact of Climate Change on the Distribution of Three Rare Salamanders (Liua shihi, Pseudohynobius jinfo, and Tylototriton wenxianensis) in Chongqing, China, and Their Conservation Implications

Animals : an open access journal from MDPI

Linking Habitat and Associated Abiotic Conditions to Predict Fish Hotspots Distribution Areas within La Paz Bay: Evaluating Marine Conservation Areas

Prediction of Suitable Habitat Distribution of Cryptosphaeria pullmanensis in the World and China under Climate Change


FUNGuild: parsing OTUs into functional guilds

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System

Cryptic Risks to Forest Biosecurity Associated with the Global Movement of Commercial Seed

Soil depth and grassland origin cooperatively shape microbial community co‐occurrence and function

Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates

Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel

Application of Manure Rather Than Plant-Origin Organic Fertilizers Alters the Fungal Community in Continuous Cropping Tobacco Soil

Microbiota dysbiosis in honeybee (Apis mellifera L.) larvae infected with brood diseases and foraging bees exposed to agrochemicals

Diversity and Communities of Fungal Endophytes from Four Pinus Species in Korea

Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions

Mycology&#58 An International Journal on Fungal Biology

How Tillage and Crop Rotation Change the Distribution Pattern of Fungi


OmniXAI: A Library for eXplainable AI

OmniXAI: A Library for Explainable AI

MACE: An Efficient Model-Agnostic Framework for Counterfactual Explanation


nonlinear control optimization tool

An Optimal Control Approach to Sequential Machine Teaching

Real-time trajectory planning for automated vehicle safety and performance in dynamic environments

NLOptControl: A modeling language for solving optimal control problems


indicTranslate v1 - Machine Translation for 11 Indic languages. For latest v2, check: https://github.com/AI4Bharat/IndicTrans2

Samanantar: The Largest Publicly Available Parallel Corpora Collection for 11 Indic Languages

IndicNLG Benchmark: Multilingual Datasets for Diverse NLG Tasks in Indic Languages

Building a Llama2-finetuned LLM for Odia Language Utilizing Domain Knowledge Instruction Set

LAHM : Large Annotated Dataset for Multi-Domain and Multilingual Hate Speech Identification

IIITT@Dravidian-CodeMix-FIRE2021: Transliterate or translate? Sentiment analysis of code-mixed text in Dravidian languages

Improving Access to Justice for the Indian Population: A Benchmark for Evaluating Translation of Legal Text to Indian Languages

MILDSum: A Novel Benchmark Dataset for Multilingual Summarization of Indian Legal Case Judgments

IL-TUR: Benchmark for Indian Legal Text Understanding and Reasoning


MPyC: Multiparty Computation in Python

Precision health data: Requirements, challenges and existing techniques for data security and privacy

DLT Based Authentication Framework for Industrial IoT Devices

SecureFedYJ: a safe feature Gaussianization protocol for Federated Learning

HACCLE: metaprogramming for secure multi-party computation

Proceedings of the 20th ACM SIGPLAN International Conference on Generative Programming: Concepts and Experiences

A Verifiable Multiparty Computation Solver for the Assignment Problem and Applications to Air Traffic Management

PoS4MPC: Automated Security Policy Synthesis for Secure Multi-party Computation

Symphony: Expressive Secure Multiparty Computation with Coordination


The GitHub repository for the paper: “Time Series is a Special Sequence: Forecasting with Sample Convolution and Interaction“. (NeurIPS 2022)

SCINet: Time Series Modeling and Forecasting with Sample Convolution and Interaction

Deep Learning Methods for Predicting Tap-Water Quality Time Series in South Korea

Neural Additive Models for Nowcasting

A Novel Hyperdimensional Computing Framework for Online Time Series
  Forecasting on the Edge


Open data sets related to the covid19 pandemic in Slovakia.

The impact of repeated mass antigen testing for COVID-19 on the prevalence of the disease

Analysis of Hazard Rate of Municipalities in Slovakia in Terms of COVID-19

International journal of environmental research and public health

Impact of the Euro 2020 championship on the spread of COVID-19

Analysis of the specificity of a COVID-19 antigen test in the Slovak mass testing program

THE RELATION BETWEEN COVID INCIDENCE AND INTERNAL MOBILITY IN DISTRICTS IN SLOVAKIA

PROGNOSTICKÉ PRÁCE - PP (FORESIGHT, ANALYSIS AND RECOMMENDATIONS - FAR)


Signature Analysis and Visualization for Single-Cell RNA-seq

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

TAK1 deficiency promotes liver injury and tumorigenesis via ferroptosis and macrophage cGAS-STING signalling

An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variability

SMARCB1 regulates a TFCP2L1-MYC transcriptional switch promoting renal medullary carcinoma transformation and ferroptosis resistance

Interactive, integrated analysis of single-cell transcriptomic and phylogenetic data with PhyloVision

Multi-omics profiling of mouse polycystic kidney disease progression at a single cell resolution


*UNMAINTAINED* Decompiler and Security Analysis tool for Blockchain-based Ethereum Smart-Contracts

Empirical Review of Automated Analysis Tools on 47,587 Ethereum Smart Contracts

Zenodo (CERN European Organization for Nuclear Research)

Vandal: A Scalable Security Analysis Framework for Smart Contracts

Precise Attack Synthesis for Smart Contracts

EtherSolve: Computing an Accurate Control-Flow Graph from Ethereum Bytecode

SIF: A Framework for Solidity Code Instrumentation and Analysis


Static program analysis framework for Ethereum smart contract bytecode.

MadMax: surviving out-of-gas conditions in Ethereum smart contracts

Proceedings of the ACM on Programming Languages

Security Analysis Methods on Ethereum Smart Contract Vulnerabilities: A Survey

Smart Contract Vulnerability Detection Technique: A Survey

Standardising smart contracts: Automatically inferring ERC standards

Evolution of automated weakness detection in Ethereum bytecode: a comprehensive study

Next-Paradigm Programming Languages: What Will They Look Like and What Changes Will They Bring?

MuFuzz: Sequence-Aware Mutation and Seed Mask Guidance for Blockchain Smart Contract Fuzzing


This repository is intended to host tools and demos for ActivityNet

Weakly Supervised Action Localization by Sparse Temporal Pooling Network

Background Suppression Network for Weakly-supervised Temporal Action Localization

Weakly-Supervised Action Localization by Generative Attention Modeling

Weakly-supervised Action Localization with Background Modeling

Is Someone Speaking? Exploring Long-term Temporal Features for Audio-visual Active Speaker Detection

Two-Stream Consensus Network for Weakly-Supervised Temporal Action Localization

CoLA: Weakly-Supervised Temporal Action Localization with Snippet Contrastive Learning

Weakly-supervised Temporal Action Localization by Uncertainty Modeling

Marginalized Average Attentional Network for Weakly-Supervised Learning

Cross-modal Consensus Network for Weakly Supervised Temporal Action Localization


Particle-in-cell code for plasma physics simulations

Nonlinear Electromagnetic-wave Interactions in Pair Plasma. I. Nonrelativistic Regime

Enhanced collisionless laser absorption in strongly magnetized plasmas

On the electromagnetic-electron rings originating from the interaction of high-power short-pulse laser and underdense plasma

Benchmarking magnetized three-wave coupling for laser backscattering: Analytic solutions and kinetic simulations


Official implementations of PSENet, PAN and PAN++.

Efficient and Accurate Arbitrary-Shaped Text Detection with Pixel Aggregation Network

PAN++: Towards Efficient and Accurate End-to-End Spotting of Arbitrarily-Shaped Text

Turning a CLIP Model into a Scene Text Detector

FAST: Faster Arbitrarily-Shaped Text Detector with Minimalist Kernel Representation


[ACL 2022] Structured Pruning Learns Compact and Accurate Models https://arxiv.org/abs/2204.00408

LoSparse: Structured Compression of Large Language Models based on Low-Rank and Sparse Approximation

PruMUX: Augmenting Data Multiplexing with Model Compression


Analysis ready CMIP6 data in python the easy way with pangeo tools.


List of gene lists for genomic analyses.

Systematic single-variant and gene-based association testing of thousands of phenotypes in 394,841 UK Biobank exomes

Transcript expression-aware annotation improves rare variant interpretation

CCR8-targeted specific depletion of clonally expanded Treg cells in tumor tissues evokes potent tumor immunity with long-lasting memory

Proceedings of the National Academy of Sciences of the United States of America

Human and mouse essentiality screens as a resource for disease gene discovery

The 3D mutational constraint on amino acid sites in the human proteome

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

Transcript expression-aware annotation improves rare variant discovery and interpretation

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants in whole-genome sequencing

Leveraging gene co-regulation to identify gene sets enriched for disease heritability

Human genetic analyses of organelles highlight the nucleus in age-related trait heritability


ANI-1 neural net potential with python interface (ASE)

Less is more: Sampling chemical space with active learning

Extending the Applicability of the ANI Deep Learning Molecular Potential to Sulfur and Halogens

Journal of chemical theory and computation

Machine learning for protein folding and dynamics

Machine learning for molecular dynamics with strongly correlated electrons

Simple and efficient algorithms for training machine learning potentials to force data


Python framework for inference in Hawkes processes.

Tick: a Python library for statistical learning, with a particular emphasis on time-dependent modelling

Scalable Bayesian Inference for Excitatory Point Process Networks

EasyTPP: Towards Open Benchmarking Temporal Point Processes

THAP: A Matlab Toolkit for Learning with Hawkes Processes

Inferring Multiplex Diffusion Network via Multivariate Marked Hawkes Process

FaDIn: Fast Discretized Inference for Hawkes Processes with General Parametric Kernels

A Review of Network Inference Techniques for Neural Activation Time Series

HoTPP Benchmark: Are We Good at the Long Horizon Events Forecasting?


Package for interpreting scikit-learn's decision tree and random forest predictions.

A Survey on the Explainability of Supervised Machine Learning

Journal of Artificial Intelligence Research

Toward Trustworthy AI Development: Mechanisms for Supporting Verifiable Claims

Explainable AI for Trees: From Local Explanations to Global Understanding

Machine Learning for the Zwicky Transient Facility

Publications of the Astronomical Society of the Pacific

Predicting disease-causing variant combinations

Get It Scored Using AutoSAS -- An Automated System for Scoring Short Answers

Understanding mutational effects in digenic diseases

Towards novel insights in lattice field theory with explainable machine learning

Classification of non-coding variants with high pathogenic impact

Learning from the machine: interpreting machine learning algorithms for point- and extended-source classification

Monthly Notices of the Royal Astronomical Society


Bloom-filter based minimal perfect hash function library

Fast and scalable minimal perfect hashing for massive key sets

RecSplit: Minimal Perfect Hashing via Recursive Splitting

A resource-frugal probabilistic dictionary and applications in bioinformatics

PTHash: Revisiting FCH Minimal Perfect Hashing

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

Parallel and External-Memory Construction of Minimal Perfect Hash Functions With PTHash

Minimal perfect hash functions in large scale bioinformatics Problem


Xwin-LM: Powerful, Stable, and Reproducible LLM Alignment

Camels in a Changing Climate: Enhancing LM Adaptation with Tulu 2

Common 7B Language Models Already Possess Strong Math Capabilities

Skill-Mix: a Flexible and Expandable Family of Evaluations for AI models

DyVal: Dynamic Evaluation of Large Language Models for Reasoning Tasks

BitDelta: Your Fine-Tune May Only Be Worth One Bit

Top Leaderboard Ranking = Top Coding Proficiency, Always? EvoEval:
  Evolving Coding Benchmarks via LLM

Efficient Inference of Vision Instruction-Following Models with Elastic Cache

Xwin-LM: Strong and Scalable Alignment Practice for LLMs

EffiLearner: Enhancing Efficiency of Generated Code via Self-Optimization

AutoBencher: Creating Salient, Novel, Difficult Datasets for Language
  Models


Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

Fast and accurate de novo genome assembly from long uncorrected reads

Nanopore Sequencing Technology and Tools: Computational Analysis of the Current State, Bottlenecks, and Future Directions

Research in Computational Molecular Biology

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus

Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development

De novo genome assembly of the potent medicinal plant Rehmannia glutinosa using nanopore technology

Computational and structural biotechnology journal

Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics

Transmission of Similar Mcr-1 Carrying Plasmids among Different Escherichia coli Lineages Isolated from Livestock and the Farmer

Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production


BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results

Evolving BioAssay Ontology (BAO): modularization, integration and applications

Formalization, Annotation and Analysis of Diverse Drug and Probe Screening Assay Datasets Using the BioAssay Ontology (BAO)

ORKG-Leaderboards: a systematic workflow for mining leaderboards as a knowledge graph


Code for simulating skies for 21cm Intensity Mapping, including galactic and extragalactic foregrounds.

21 cm Signal Recovery via Robust Principal Component Analysis

Ionospheric Attenuation of Polarized Foregrounds in 21 cm Epoch of Reionization Measurements: A Demonstration for the HERA Experiment

Packed Ultra-wideband Mapping Array (PUMA): Astro2020 RFI Response

Antisymmetric Cross-correlation between H i and CO Line Intensity Maps as a New Probe of Cosmic Reionization

A Semiblind PCA-based Foreground Subtraction Method for 21 cm Intensity Mapping

A Simulation of Calibration and Map-making Errors of the Tianlai Cylinder Pathfinder Array

Application of Regularization Methods in the Sky Map Reconstruction of the Tianlai Cylinder Pathfinder Array


A K8s operator to reduce CO2 footprint of your clusters


Multivariate Exploratory Data Analysis Toolbox for Matlab

Multivariate Big Data Analysis for intrusion detection: 5 steps from the haystack to the needle

Comparison of Multivariate ANOVA-Based Approaches for the Determination of Relevant Variables in Experimentally Designed Metabolomic Studies

Variable-selection ANOVA Simultaneous Component Analysis (VASCA)


A collection of tools for generating, manipulating and - most of all - solving parity games.

Automated Temporal Equilibrium Analysis: Verification and Synthesis of Multi-Player Games

The Fixpoint-Iteration Algorithm for Parity Games

Visibly Linear Dynamic Logic

An Exponential Lower Bound for Zadeh's pivot rule

Hyper Temporal Networks

Reduced Dependency Spaces for Existential Parameterised Boolean Equation Systems

Faster O(|V|^2|E|W)-Time Energy Algorithms for Optimal Strategy Synthesis in Mean Payoff Games

Generic Model Checking for Modal Fixpoint Logics in COOL-MC

VLDL Satisfiability and Model Checking via Tree Automata


Decision Analytic Modeling (DAM) package is a suite of functions for analyzing and visualizing the health economic outputs of mathematical models

hesim: Health Economic Simulation Modeling and Decision Analysis

An Introductory Tutorial on Cohort State-Transition Models in R Using a Cost-Effectiveness Analysis Example

A Tutorial on Time-Dependent Cohort State-Transition Models in R using a Cost-Effectiveness Analysis Example


chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

Molecular characterization of organoids derived from pancreatic intraductal papillary mucinous neoplasms

chimeraviz: a tool for visualizing chimeric RNA

Immuno-genomic classification of colorectal cancer organoids reveals cancer cells with intrinsic immunogenic properties associated with patient survival

Journal of experimental & clinical cancer research : CR

Clinker: visualizing fusion genes detected in RNA-seq data

RNA-sequencing of IDH-wild-type glioblastoma with chromothripsis identifies novel gene fusions with potential oncogenic properties

Detailed Molecular and Immune Marker Profiling of Archival Prostate Cancer Samples Reveals an Inverse Association between TMPRSS2:ERG Fusion Status and Immune Cell Infiltration

The Journal of molecular diagnostics : JMD

FuSpot: a web-based tool for visual evaluation of fusion candidates


Official implementation of AnimateDiff.

AnimateDiff: Animate Your Personalized Text-to-Image Diffusion Models without Specific Tuning

SparseCtrl: Adding Sparse Controls to Text-to-Video Diffusion Models

DreamVideo: Composing Your Dream Videos with Customized Subject and Motion

Matryoshka Diffusion Models

GAIA: Rethinking Action Quality Assessment for AI-Generated Videos

I4VGen: Image as Free Stepping Stone for Text-to-Video Generation


Simple DAOPHOT-type photometry in Python translated from IDL AstroLib photometry algorithms.  Please email me with bugs, suggestions, omissions, etc.  The code is citable as part of the Astrophysics Source Code Library (http://ascl.net/1501.010).

DEJA VU ALL OVER AGAIN: THE REAPPEARANCE OF SUPERNOVA REFSDAL

ILLUMINATING A DARK LENS: A TYPE Ia SUPERNOVA MAGNIFIED BY THE FRONTIER FIELDS GALAXY CLUSTER ABELL 2744

SN REFSDAL: PHOTOMETRY AND TIME DELAY MEASUREMENTS OF THE FIRST EINSTEIN CROSS SUPERNOVA

Searching for Highly Magnified Stars at Cosmological Distances: Discovery of a Redshift 0.94 Blue Supergiant in Archival Images of the Galaxy Cluster MACS J0416.1-2403

Two Peculiar Fast Transients in a Strongly Lensed Host Galaxy

The Magnificent Five Images of Supernova Refsdal: Time Delay and Magnification Measurements

GRAWITA: VLT Survey Telescope observations of the gravitational wave sources GW150914 and GW151226

Target-of-Opportunity Observation Detectability of Kilonovae with WFST

An Independent Determination of the Distance to Supernova SN 1987A by Means of the Light Echo AT 2019xis

Linear and Circular Polarimetry of the Optically Bright Relativistic Tidal Disruption Event AT 2022cmc


Julia package for ecosystem simulation

Dynamic virtual ecosystems as a tool for detecting large-scale responses of biodiversity to environmental and land-use change


Openai style api for open large language models, using LLMs just as chatgpt! Support for LLaMA, LLaMA-2, BLOOM, Falcon, Baichuan, Qwen, Xverse, SqlCoder, CodeLLaMA, ChatGLM, ChatGLM2, ChatGLM3 etc. 开源大模型的统一后端接口

LLaMA: Open and Efficient Foundation Language Models

BLOOM: A 176B-Parameter Open-Access Multilingual Language Model

A Survey of Large Language Models


Tools for dealing with APOGEE data

ON GALACTIC DENSITY MODELING IN THE PRESENCE OF DUST EXTINCTION

The age–metallicity structure of the Milky Way disc using APOGEE

THE CHEMICAL HOMOGENEITY OF OPEN CLUSTERS

The Milky Way tomography with APOGEE: intrinsic density distribution and structure of mono-abundance populations

The 3D Kinematics of the Orion Nebula Cluster: NIRSPEC-AO Radial Velocities of the Core Population

Searching for the extra-tidal stars of globular clusters using high-dimensional analysis and a core particle spray code

Testing the chemical homogeneity of chemically tagged dissolved birth clusters

The peculiar globular cluster Palomar 1 and persistence in the SDSS-APOGEE data base

Carbon-enhanced metal-poor stars in the SDSS–APOGEE data base

Functional Data Analysis for Extracting the Intrinsic Dimensionality of Spectra: Application to Chemical Homogeneity in the Open Cluster M67


Reconnaissance tool for GitHub organizations

What are the Practices for Secret Management in Software Artifacts?

Secrets Revealed in Container Images: An Internet-wide Study on Occurrence and Impact

Proceedings of the ACM Asia Conference on Computer and Communications Security

What Challenges Do Developers Face About Checked-in Secrets in Software Artifacts?

A Comparative Study of Software Secrets Reporting by Secret Detection Tools


OpenFlow 1.3 switch.

A Survey on Software Defined Networking: Architecture for Next Generation Network

Journal of Network and Systems Management

Timed Consistent Network Updates in Software-Defined Networks

HoneyDOC: An Efficient Honeypot Architecture Enabling All-Round Design

IEEE Journal on Selected Areas in Communications

Time4: Time for SDN

IEEE Transactions on Network and Service Management

The Road to BOFUSS: The Basic OpenFlow User-space Software Switch

The Case for Data Plane Timestamping in SDN

Conference on Computer Communications Workshops

EdgeML: Towards Network-Accelerated Federated Learning over Wireless Edge

Towards a Stateful Forwarding Abstraction to Implement Scalable Network Functions in Software and Hardware

A SDN-based Flexible System for On-the-Fly Monitoring and Treatment of Security Events


Letswave 6 - Matlab EEG signal processing toolbox

ERP mismatch response to phonological and temporal regularities in speech

Neurophysiological evidence for crossmodal (face-name) person-identity representation in the human left ventral temporal cortex

Linking neurophysiological processes of action monitoring to post-response speed-accuracy adjustments in a neuro-cognitive diffusion model

Multimodal Neuroimaging Predictors of Learning Performance of Sensorimotor Rhythm Up-Regulation Neurofeedback

Differences in own-face but not own-name discrimination between autistic and neurotypical adults: A fast periodic visual stimulation-EEG study

Cortex; a journal devoted to the study of the nervous system and behavior

Hallucination Proneness Alters Sensory Feedback Processing in Self-voice Production

Linguistic and attentional factors – not statistical regularities – contribute to word-selective neural responses with FPVS-oddball paradigms


Elegant and Easy Tweet Preprocessing in Python

BUT-FIT at SemEval-2019 Task 7: Determining the Rumour Stance with Pre-Trained Deep Bidirectional Transformers

Analysing user identity via time-sensitive semantic edit distance (t-SED): a case study of Russian trolls on Twitter

Leveraging Multilingual Transformers for Hate Speech Detection

Implicit Sentiment Analysis with Event-centered Text Representation

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing

Fine-Tune Longformer for Jointly Predicting Rumor Stance and Veracity

Proceedings of the 3rd ACM India Joint International Conference on Data Science & Management of Data (8th ACM IKDD CODS & 26th COMAD)

One to rule them all: Towards Joint Indic Language Hate Speech Detection

Task Adaptive Pretraining of Transformers for Hostility Detection

Fluctuations of psychological states on Twitter before and during COVID-19

HATEMINER at SemEval-2019 Task 5: Hate speech detection against Immigrants and Women in Twitter using a Multinomial Naive Bayes Classifier

North American Chapter of the Association for Computational Linguistics

BOUN-TABI@SMM4H’22: Text-to-Text Adverse Drug Event Extraction with Data Balancing and Prompting


Battenberg algorithm and associated implementation script

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis

Spatial genomics maps the structure, nature and evolution of cancer clones

Tumor to normal single cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers

Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy

Single cell derived mRNA signals across human kidney tumors

Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers

Quantifying the influence of mutation detection on tumour subclonal reconstruction


Minisketch: an optimized library for BCH-based set reconciliation

Bandwidth-Efficient Transaction Relay for Bitcoin

Building Scalable Decentralized Payment Systems

On the Routing Convergence Delay in the Lightning Network

Practical Rateless Set Reconciliation


hybrid assembly pipeline for bacterial genomes

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China

HASLR: Fast Hybrid Assembly of Long Reads

WHO Critical Priority Escherichia coli as One Health Challenge for a Post-Pandemic Scenario: Genomic Surveillance and Analysis of Current Trends in Brazil

Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

Emergence of Meropenem Resistance Among Cefotaxime Non-susceptible Streptococcus pneumoniae: Evidence and Challenges

Genome-Based Analysis of Klebsiella spp. Isolates from Animals and Food Products in Germany, 2013–2017


High Order Hex-Quad Mesh (HOHQMesh) package to automatically generate all-quadrilateral meshes with high order boundary information.

Adaptive numerical simulations with Trixi.jl: A case study of Julia for scientific computing

HORSES3D: a high-order discontinuous Galerkin solver for flow simulations and multi-physics applications

Lax-Wendroff Flux Reconstruction on adaptive curvilinear meshes with
  error based time stepping for hyperbolic conservation laws


Python library for modeling contrails and other aviation climate impacts


In silico chemical library engine for high-accuracy chemical property prediction

An automated framework for NMR chemical shift calculations of small organic molecules

ISiCLE: A molecular collision cross section calculation pipeline for establishing large in silico reference libraries for compound identification.

An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts


R package for bcbio RNA-seq analysis.

ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair

bcbioRNASeq: R package for bcbio RNA-seq analysis

TOmicsVis: An all‐in‐one transcriptomic analysis and visualization R package with Shinyapp interface

TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression


A Coq formalization of information theory and linear error-correcting codes

A trustful monad for axiomatic reasoning with probability and nondeterminism

Extending Equational Monadic Reasoning with Monad Transformers

Formal Adventures in Convex and Conical Spaces


Bioinformatics tool to find integrons in bacterial genomes

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Whole-genome analysis of carbapenem-resistant Acinetobacter baumannii from clinical isolates in Southern Thailand

Zenodo (CERN European Organization for Nuclear Research)

Prevalence and Population Diversity of Listeria monocytogenes Isolated from Dairy Cattle Farms in the Cantabria Region of Spain

Animals : an open access journal from MDPI

Coexistence of blaNDM-1 and blaIMP-4 in One Novel Hybrid Plasmid Confers Transferable Carbapenem Resistance in an ST20-K28 Klebsiella pneumoniae

First Report of Colistin-Resistant Escherichia coli Carrying mcr-1 IncI2(delta) and IncX4 Plasmids from Camels (Camelus dromedarius) in the Gulf Region

Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the P. syringae species complex


Sokoban environment for OpenAI Gym

The Truth is in There: Improving Reasoning in Language Models with Layer-Selective Rank Reduction

BabyAI 1.1

There Is No Turning Back: A Self-Supervised Approach for Reversibility-Aware Reinforcement Learning

Scaling All-Goals Updates in Reinforcement Learning Using Convolutional Neural Networks

Causal Reinforcement Learning: A Survey

Transfer Learning and Curriculum Learning in Sokoban

Optimize Planning Heuristics to Rank, not to Estimate Cost-to-Goal

Learning the Arrow of Time

Potential-based Reward Shaping in Sokoban


Auto-WEKA

Auto-WEKA: Combined Selection and Hyperparameter Optimization of Classification Algorithms

Automated Machine Learning: Methods, Systems, Challenges

The Springer series on challenges in machine learning

Auto-WEKA: Automatic Model Selection and Hyperparameter Optimization in WEKA

Use of automated artificial intelligence to predict the need for orthodontic extractions

Automatic Composition and Optimization of Multicomponent Predictive Systems With an Extended Auto-WEKA

IEEE Transactions on Automation Science and Engineering

Product Quality Driven Auto-Prognostics: Low-Cost Digital Solution for SMEs

AutoMLBench: A Comprehensive Experimental Evaluation of Automated Machine Learning Frameworks

Accurate prediction of breast cancer survival through coherent voting networks with gene expression profiling

The Influence of Speed and Position in Dynamic Gesture Recognition for Human-Robot Interaction

Computational comparative analysis identifies potential stemness-related markers for mesenchymal stromal/stem cells

Frontiers in cell and developmental biology


Genome-wide Efficient Mixed Model Association

Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool for Genome-wide Association Study

基因组蛋白质组与生物信息学报

A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank

New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens

Genome-wide association study meta-analysis of suicide death and suicidal behavior

Identification of Major Loci and Candidate Genes for Meat Production-Related Traits in Broilers

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

Genome-Wide Association Study of Starch Properties in Local Thai Rice

Genome-wide association study of population-standardised cognitive performance phenotypes in a rural South African community


generation of Sobol low-discrepancy sequence (LDS) for the Julia language

Surrogate Assisted Methods for the Parameterisation of Agent-Based Models

A Quasi–Monte Carlo Method With Krylov Linear Solvers for Multigroup Neutron Transport Simulations

Deterministic and quasi-random sampling of optimized Gaussian mixture distributions for vibronic Monte Carlo

Measure transport with kernel mean embeddings

Density estimation in RKHS with application to Korobov spaces in high dimensions

Global Sensitivity Analysis Applied to Train Traffic Rescheduling: A Comparative Study


A simple method to perform semi-supervised learning with limited data.

FixMatch: Simplifying Semi-Supervised Learning with Consistency and Confidence

Dash: Semi-Supervised Learning with Dynamic Thresholding

Exponential Moving Average Normalization for Self-supervised and Semi-supervised Learning

Not All Unlabeled Data are Equal: Learning to Weight Data in Semi-supervised Learning

AlphaMatch: Improving Consistency for Semi-supervised Learning with Alpha-divergence

Enhancing MR Image Segmentation with Realistic Adversarial Data Augmentation

Distribution-Aware Semantics-Oriented Pseudo-label for Imbalanced Semi-Supervised Learning.

Credal Self-Supervised Learning

Fix-A-Step: Semi-supervised Learning from Uncurated Unlabeled Data

Building One-Shot Semi-supervised (BOSS) Learning up to Fully Supervised Performance


Leaf: A Benchmark for Federated Settings

LEAF: A Benchmark for Federated Settings

Adaptive Risk Minimization: Learning to Adapt to Domain Shift

Overcoming Noisy and Irrelevant Data in Federated Learning

Cluster-driven Graph Federated Learning over Multiple Domains

Federated Hyperparameter Tuning: Challenges, Baselines, and Connections to Weight-Sharing

Curse or Redemption? How Data Heterogeneity Affects the Robustness of Federated Learning

EasyFL: A Low-Code Federated Learning Platform for Dummies

Demystifying Why Local Aggregation Helps: Convergence Analysis of Hierarchical SGD

FedEval: A Holistic Evaluation Framework for Federated Learning

Motley: Benchmarking Heterogeneity and Personalization in Federated Learning


PyTorch model training and layer saturation monitor

SVCCA: Singular Vector Canonical Correlation Analysis for Deep Learning Dynamics and Interpretability

(Input) Size Matters for CNN Classifiers

Should You Go Deeper? Optimizing Convolutional Neural Network Architectures without Training

Spectral Analysis of Latent Representations

Feature Space Saturation during Training


GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Whole-Genome Sequencing Analysis of Salmonella Enterica Serotype Enteritidis Isolated from Poultry Sources in South Korea, 2010–2017

Prevalence and distribution of multilocus sequence types of Staphylococcus aureus isolated from bulk tank milk and cows with mastitis in Pennsylvania

Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA

Atypical Serogroup IVb-v1 of Listeria monocytogenes Assigned to New ST2801, Widely Spread and Persistent in the Environment of a Pork-Meat Producing Plant of Central Italy

Listeria monocytogenes in ready to eat meat products from Zambia: phenotypical and genomic characterization of isolates

Retrospective Investigation of the Whole Genome of the Hypovirulent Listeria monocytogenes Strain of ST201, CC69, Lineage III, Isolated from a Piglet with Fatal Neurolisteriosis

Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences

International journal of molecular sciences


This repo contains a list of the 10,000 most common English words in order of frequency, as determined by n-gram frequency analysis of the Google's Trillion Word Corpus.

CLIP-Dissect: Automatic Description of Neuron Representations in Deep Vision Networks

Cross-Lingual Sentiment Analysis Without (Good) Translation

Improving Grammatical Error Correction with Data Augmentation by Editing Latent Representation

International Conference on Computational Linguistics

Strong Baselines for Complex Word Identification across Multiple Languages

Language Identification of Bengali-English Code-Mixed data using Character & Phonetic based LSTM Models

ModelDiff: A Framework for Comparing Learning Algorithms

FilteredWeb: A Framework for the Automated Search-Based Discovery of Blocked URLs

FlowIntent: Detecting Privacy Leakage from User Intention to Network Traffic Mapping

Understanding Script-Mixing: A Case Study of Hindi-English Bilingual Twitter Users

Workshop on Computational Approaches to Code Switching

Textwash -- automated open-source text anonymisation


Policy Gradient is all you need! A step-by-step tutorial for well-known PG methods.

Proximal Policy Optimization Algorithms

Continuous control with deep reinforcement learning

Soft Actor-Critic: Off-Policy Maximum Entropy Deep Reinforcement Learning with a Stochastic Actor

Addressing Function Approximation Error in Actor-Critic Methods

Overcoming Exploration in Reinforcement Learning with Demonstrations

Leveraging Demonstrations for Deep Reinforcement Learning on Robotics Problems with Sparse Rewards

Combining brain-computer interfaces with deep reinforcement learning for robot training: a feasibility study in a simulation environment


docTTTTTquery document expansion model

Sparse, Dense, and Attentional Representations for Text Retrieval

Document Expansion by Query Prediction

Multi-Stage Document Ranking with BERT

Learning Passage Impacts for Inverted Indexes

A Neural Corpus Indexer for Document Retrieval

Query Reformulation using Query History for Passage Retrieval in Conversational Search

Faster Learned Sparse Retrieval with Guided Traversal

GLEN: Generative Retrieval via Lexical Index Learning

Can questions summarize a corpus? Using question generation for characterizing COVID-19 research

Generative Dense Retrieval: Memory Can Be a Burden


DualDICE: Behavior-Agnostic Estimation of Discounted Stationary Distribution Corrections

GenDICE: Generalized Offline Estimation of Stationary Values

Reinforcement Learning via Fenchel-Rockafellar Duality

Benchmarks for Deep Off-Policy Evaluation

CoinDICE: Off-Policy Confidence Interval Estimation

Offline Policy Selection under Uncertainty

Deeply-Debiased Off-Policy Interval Estimation

Learning Bellman Complete Representations for Offline Policy Evaluation

Off-policy Reinforcement Learning with Optimistic Exploration and Distribution Correction


Aave Protocol Version 1.0 - Decentralized Lending Pools

Quantifying Blockchain Extractable Value: How dark is the forest?

Attacking the DeFi Ecosystem with Flash Loans for Fun and Profit

The Decentralized Financial Crisis

On the Just-In-Time Discovery of Profit-Generating Transactions in DeFi Protocols

SoK: Decentralized Finance (DeFi) Attacks

An Empirical Study of DeFi Liquidations: Incentives, Risks, and Instabilities

CeFi vs. DeFi -- Comparing Centralized to Decentralized Finance

SoK: Lending Pools in Decentralized Finance

Flashot: A Snapshot of Flash Loan Attack on DeFi Ecosystem

Decentralized Finance (DeFi): A Survey


Transcript assembly and quantification for RNA-Seq

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Improved transcriptome assembly using a hybrid of long and short reads with StringTie

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv : the preprint server for biology

Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease

Transcriptome Profile Analysis of Strawberry Leaves Reveals Flowering Regulation under Blue Light Treatment

Mutant U2AF1-induced alternative splicing of H2afy (macroH2A1) regulates B-lymphopoiesis in mice

Efficacy of pembrolizumab and comprehensive CD274/PD-L1 profiles in patients previously treated with chemoradiation therapy as radical treatment in bladder cancer


Generate bootstrapped confidence intervals for A/B testing in Python.

Deep Reinforcement Learning that Matters

GEP-PG: Decoupling Exploration and Exploitation in Deep Reinforcement Learning Algorithms

How Many Random Seeds? Statistical Power Analysis in Deep Reinforcement Learning Experiments

A Hitchhiker's Guide to Statistical Comparisons of Reinforcement Learning Algorithms

Constrained Bayesian Optimization with Max-Value Entropy Search

Predicting acute kidney injury at hospital re-entry using high-dimensional electronic health record data

Quantifying Variance in Evaluation Benchmarks


Global Biotic Interactions provides access to existing species interaction datasets

Global Biotic Interactions: Taxon Graph


Python module for Simulated Annealing optimization

The Role of Permutation Invariance in Linear Mode Connectivity of Neural Networks

Characterizing and Evaluating Adversarial Examples for Offline Handwritten Signature Verification

IEEE Transactions on Information Forensics and Security

Mixed-Variable Bayesian Optimization

PROCEEDINGS OF THE TWENTY-NINTH INTERNATIONAL JOINT CONFERENCE ON ARTIFICIAL INTELLIGENCE

Placement in Integrated Circuits using Cyclic Reinforcement Learning and Simulated Annealing

Hdconfigor: Automatically Tuning High Dimensional Configuration Parameters for Log Search Engines

Simulated Annealing-Based Hyperspectral Data Optimization for Fish Species Classification: Can the Number of Measured Wavelengths Be Reduced?

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis

CryoRL: Reinforcement Learning Enables Efficient Cryo-EM Data Collection

The DNA of Calabi-Yau Hypersurfaces

Simulated Annealing with Levy Distribution for Fast Matrix Factorization-Based Collaborative Filtering


An experimentation and research platform to investigate the interaction of automated agents in an abstract simulated network environments.

CybORG: A Gym for the Development of Autonomous Cyber Agents

Autonomous Penetration Testing Based on Improved Deep Q-Network

DroidRL: Feature selection for android malware detection with reinforcement learning

Incorporating Deception into CyberBattleSim for Autonomous Defense

Can Large Language Models Find And Fix Vulnerable Software?

NASimEmu: Network Attack Simulator & Emulator for Training Agents Generalizing to Novel Scenarios

Research and Challenges of Reinforcement Learning in Cyber Defense Decision-Making for Intranet Security

Inroads into Autonomous Network Defence using Explained Reinforcement Learning

Adversarial Decision-Making for Moving Target Defense: A Multi-Agent Markov Game and Reinforcement Learning Approach

Depending on yourself when you should: Mentoring LLM with RL agents to
  become the master in cybersecurity games


Repo for reproduction of sequential social dilemmas

Multi-agent Reinforcement Learning in Sequential Social Dilemmas

Social Influence as Intrinsic Motivation for Multi-Agent Deep Reinforcement Learning

Inequity aversion improves cooperation in intertemporal social dilemmas

The Importance of Credo in Multiagent Learning

IQ-Flow: Mechanism Design for Inducing Cooperative Behavior to Self-Interested Agents in Sequential Social Dilemmas

Learning to Learn Group Alignment: A Self-Tuning Credo Framework with Multiagent Teams

Emergent Cooperation under Uncertain Incentive Alignment


Python tools for the Regional Ocean Modeling System (ROMS)


Tools for Easier Analysis of Meteorological Fields


TextAugment: Text Augmentation Library

EDA: Easy Data Augmentation Techniques for Boosting Performance on Text Classification Tasks

Augmenting Data with Mixup for Sentence Classification: An Empirical Study

Improving short text classification through global augmentation methods

Is it Fake? News Disinformation Detection on South African News Websites

HULAT at SemEval-2023 Task 9: Data Augmentation for Pre-trained Transformers Applied to Multilingual Tweet Intimacy Analysis


Django-based clone of Amazon's Mechanical Turk service running in your local environment.

FinQA: A Dataset of Numerical Reasoning over Financial Data

ConvFinQA: Exploring the Chain of Numerical Reasoning in Conversational Finance Question Answering

Collecting Verified COVID-19 Question Answer Pairs

Empirical Methods in Natural Language Processing

Laughter Synthesis: Combining Seq2seq modeling with Transfer Learning

Analysis and Assessment of Controllability of an Expressive Deep Learning-based TTS system

OpenRT: An Open-source Framework for Reasoning Over Tabular Data

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 3: System Demonstrations)

Meeting the Needs of Low-Resource Languages: The Value of Automatic Alignments via Pretrained Models

Machine Translation Believability

Tur[k]ingBench: A Challenge Benchmark for Web Agents

Building OCR/NER Test Collections

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)


Iterative Linear-Quadratic Games!

Efficient Iterative Linear-Quadratic Approximations for Nonlinear Multi-Player General-Sum Differential Games

iLQGames.jl: Rapidly Designing and Solving Differential Games in Julia

Open-Loop and Feedback Nash Trajectories for Competitive Racing with
  iLQGames

A Preview of Open-Loop and Feedback Nash Trajectories in Racing Scenarios


Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

A transcriptomic axis predicts state modulation of cortical interneurons

Orbitofrontal control of visual cortex gain promotes visual associative learning

Behavioral origin of sound-evoked activity in mouse visual cortex

Facemap: a framework for modeling neural activity based on orofacial tracking

Dopamine Axons in Dorsal Striatum Encode Contralateral Visual Stimuli and Choices

The Journal of neuroscience : the official journal of the Society for Neuroscience

Cholinergic and noradrenergic axonal activity contains a behavioral-state signal that is coordinated across the dorsal cortex

Visuomotor association orthogonalizes visual cortical population codes

Altered corollary discharge signaling in the auditory cortex of a mouse model of schizophrenia predisposition


A library for building an in-memory, Adaptive Learned indEX

ALEX: An Updatable Adaptive Learned Index

SIGMOD'20: PROCEEDINGS OF THE 2020 ACM SIGMOD INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA

A Critical Analysis of Recursive Model Indexes

DILI: A Distribution-Driven Learned Index

Micro-architectural Analysis of a Learned Index

Testing the Robustness of Learned Index Structures


A word alignment tool based on famous GIZA++, extended to support multi-threading, resume training and incremental training.

Jointly Learning to Align and Translate with Transformer Models

Simple and Effective Text Simplification Using Semantic and Neural Methods

Prompsit’s submission to WMT 2018 Parallel Corpus Filtering shared task

Proceedings of the Third Conference on Machine Translation: Shared Task Papers

Alignment-Enhanced Transformer for Constraining NMT with Pre-Specified Translations

THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Rethinking Data Augmentation for Low-Resource Neural Machine Translation: A Multi-Task Learning Approach

Flexible retrieval with NMSLIB and FlexNeuART

Attention as a Guide for Simultaneous Speech Translation

Chunk-based Decoder for Neural Machine Translation

PROCEEDINGS OF THE 55TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL 2017), VOL 1

Model and Data Transfer for Cross-Lingual Sequence Labelling in Zero-Resource Settings

Exploring Classic and Neural Lexical Translation Models for Information Retrieval: Interpretability, Effectiveness, and Efficiency Benefits


SHIFT15M: Fashion-specific dataset for set-to-set matching with several distribution shifts

Datasheets for Datasets

Exchangeable deep neural networks for set-to-set matching and learning

Multimodal Quasi-AutoRegression: forecasting the visual popularity of new fashion products

SHIFT15M: Multiobjective Large-Scale Fashion Dataset with Distributional Shifts.


I decide to sync up this repo and self-critical.pytorch. (The old master is in old master branch for archive)

Bottom-Up and Top-Down Attention for Image Captioning and Visual Question Answering

Self-critical Sequence Training for Image Captioning

Few-Shot Bot: Prompt-Based Learning for Dialogue Systems

Twin Networks: Matching the Future for Sequence Generation

Generating Diverse and Meaningful Captions

Rethinking Surgical Captioning: End-to-End Window-Based MLP Transformer Using Patches

Retrieval, Analogy, and Composition: A framework for Compositional Generalization in Image Captioning

Findings of the Association for Computational Linguistics: EMNLP 2021

Neural Image Captioning


Prompt Engineering | Prompt Versioning | Use GPT or other prompt based models to get structured output. Join our discord for Prompt-Engineering, LLMs and other latest research

Prompting Frameworks for Large Language Models: A Survey

From Zero to Hero: Examining the Power of Symbolic Tasks in Instruction Tuning

Is ChatGPT a game changer for geocoding - a benchmark for geocoding address parsing techniques

Prompterator: Iterate Efficiently towards More Effective Prompts

Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: System Demonstrations


Gradient based hyperparameter optimization & meta-learning package for TensorFlow

Forward and Reverse Gradient-Based Hyperparameter Optimization

Learning Discrete Structures for Graph Neural Networks

Truncated Back-propagation for Bilevel Optimization

A Bridge Between Hyperparameter Optimization and Learning-to-learn

BOML: A Modularized Bilevel Optimization Library in Python for Meta Learning

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry

Far-HO: A Bilevel Programming Package for Hyperparameter Optimization and Meta-Learning


Python library for bio-inspired computational intelligence

Pymoo: Multi-Objective Optimization in Python

jMetalPy: a Python Framework for Multi-Objective Optimization with Metaheuristics

Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3

Developing Realistic FDTD GPR Antenna Surrogates by Means of Particle Swarm Optimization

IEEE Transactions on Antennas and Propagation

Opytimizer: A Nature-Inspired Python Optimizer

PyBioNetFit and the Biological Property Specification Language

Augmenting the space domain awareness ground architecture via decision analysis and multi-objective optimization

Journal of Defense Analytics and Logistics

The NeuroML ecosystem for standardized multi-scale modeling in neuroscience

Synaptic and circuit mechanisms prevent detrimentally precise correlation in the developing mammalian visual system


Bag of Tricks and A Strong Baseline for Deep Person Re-identification

A Strong Baseline and Batch Normalization Neck for Deep Person Re-Identification

Multi-Domain Learning and Identity Mining for Vehicle Re-Identification

How important are faces for person re-identification?

Rethinking Person Re-Identification via Semantic-based Pretraining

Improving Person Re-Identification with Temporal Constraints

Person Re-identification: Implicitly Defining the Receptive Fields of Deep Learning Classification Frameworks


Implementation of Graph Convolutional Networks in TensorFlow

Semi-Supervised Classification with Graph Convolutional Networks

A Comprehensive Survey on Graph Neural Networks

IEEE transactions on neural networks and learning systems

Graph Neural Networks: A Review of Methods and Applications

Revisiting Semi-Supervised Learning with Graph Embeddings

Deep Learning on Graphs: A Survey

FastGCN: Fast Learning with Graph Convolutional Networks via Importance Sampling

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

Graph Neural Networks Exponentially Lose Expressive Power for Node Classification

Graph Representation Learning via Graphical Mutual Information Maximization

AM-GCN: Adaptive Multi-channel Graph Convolutional Networks


A python package for accessing various properties of elements, ions and isotopes in the periodic table of elements.

FAENet: Frame Averaging Equivariant GNN for Materials Modeling

Inverse Design of Hybrid Organic–Inorganic Perovskites with Suitable Bandgaps via Proactive Searching Progress

Analogical discovery of disordered perovskite oxides by crystal structure information hidden in unsupervised material fingerprints

The atlas of ferroicity in two-dimensional MGeX3 family: Room-temperature ferromagnetic half metals and unexpected ferroelectricity and ferroelasticity

GlassNet: A multitask deep neural network for predicting many glass properties

Feature Selection in Machine Learning for Perovskite Materials Design and Discovery

Predicting Segregation Energy in Single Atom Alloys Using Physics and Machine Learning

NMR shift prediction from small data quantities

PhAST: Physics-Aware, Scalable, and Task-specific GNNs for Accelerated Catalyst Design

Sim2Ls: FAIR simulation workflows and data


Unofficial pytorch implementation for Self-critical Sequence Training for Image Captioning. and others.

Bottom-Up and Top-Down Attention for Image Captioning and Visual Question Answering

How Much Can CLIP Benefit Vision-and-Language Tasks?

On Hallucination and Predictive Uncertainty in Conditional Language Generation

Adversarial Inference for Multi-Sentence Video Description

Mitigating Gender Bias in Captioning Systems

Exact Adversarial Attack to Image Captioning via Structured Output Learning with Latent Variables

Bayesian Attention Modules

UMIC: An Unreferenced Metric for Image Captioning via Contrastive Learning

A Better Variant of Self-Critical Sequence Training


Tools for detecting wildlife in aerial images using active learning

AIDE: Accelerating image-based ecological surveys with interactive machine learning

Design Patterns for Machine Learning Based Systems with Human-in-the-Loop


eco2AI is a python library which accumulates statistics about power consumption and CO2 emission during running code.

eco2AI: Carbon Emissions Tracking of Machine Learning Models as the First Step Towards Sustainable AI

Efficiency is Not Enough: A Critical Perspective of Environmentally Sustainable AI

Machine learning-based detection of cardiovascular disease using ECG signals: performance vs. complexity


Inference of ploidy and heterozygosity structure using whole genome sequencing data

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

Genomic Features of Parthenogenetic Animals

Genome size evolution in the diverse insect order Trichoptera

Maintenance of Species Differences in Closely Related Tetraploid Parasitic Euphrasia (Orobanchaceae) on an Isolated Island

Genomic Resources for Goniozus legneri, Aleochara bilineata and Paykullia maculata, Representing Three Independent Origins of the Parasitoid Lifestyle in Insects

Eukaryotic Adaptation to Years-Long Starvation Resembles that of Bacteria

Intraspecific Variation in Protists: Clues for Microevolution from Poteriospumella lacustris (Chrysophyceae)

Genomic Insights into Cultivated Mexican Vanilla planifolia Reveal High Levels of Heterozygosity Stemming from Hybridization

Amynthas corticis genome reveals molecular mechanisms behind global distribution


An open-source NLP research library, built on PyTorch.

GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding

Language Models as Knowledge Bases?

Pre-trained models for natural language processing: A survey

AllenNLP: A Deep Semantic Natural Language Processing Platform

Annotation Artifacts in Natural Language Inference Data

GPT-NeoX-20B: An Open-Source Autoregressive Language Model

ELI5: Long Form Question Answering

Double Embeddings and CNN-based Sequence Labeling for Aspect Extraction

Automated Concatenation of Embeddings for Structured Prediction

From Zero to Hero: On the Limitations of Zero-Shot Language Transfer with Multilingual Transformers

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)


Official codebase used to develop Vision Transformer, SigLIP, MLP-Mixer, LiT and more.

Scaling Vision Transformers

PaLI: A Jointly-Scaled Multilingual Language-Image Model

How to train your ViT? Data, Augmentation, and Regularization in Vision Transformers

LiT: Zero-Shot Transfer with Locked-image text Tuning

Sigmoid Loss for Language Image Pre-Training

Knowledge distillation: A good teacher is patient and consistent

Better plain ViT baselines for ImageNet-1k

FlexiViT: One Model for All Patch Sizes

UViM: A Unified Modeling Approach for Vision with Learned Guiding Codes

PaliGemma: A versatile 3B VLM for transfer


Source for AusTraits

AusTraits, a curated plant trait database for the Australian flora

The AusTraits plant dictionary

AusTraits: a curated plant trait database for the Australian flora

Zenodo (CERN European Organization for Nuclear Research)


SNOwGLoBES code:  SuperNova Observatories with GLoBES

SNEWS 2.0: a next-generation supernova early warning system for multi-messenger astronomy

Constraining Properties of the Next Nearby Core-collapse Supernova with Multimessenger Signals

SNEWPY: A Data Pipeline from Supernova Simulations to Neutrino Signals

Neutrinos from dense environments: Flavor mechanisms, theoretical approaches, observations, and new directions

A D2O detector for flux normalization of a pion decay-at-rest neutrino source

Low- and High-energy Neutrinos from SN 2023ixf in M101

Neutrino Echos following Black Hole Formation in Core-collapse Supernovae

Impact of cross-section uncertainties on supernova neutrino spectral parameter fitting in the Deep Underground Neutrino Experiment

sntools: An event generator for supernova burst neutrinos

Probing neutrino decay scenarios by using the Earth matter effects on supernova neutrinos


An R package to facilitate analysis and  visualization of groundwater data from the British Columbia groundwater observation well network


Generate and process BAM files from Illumina sequencing instrument files

Epigenome Mapping Reveals Distinct Modes of Gene Regulation and Widespread Enhancer Reprogramming by the Oncogenic Fusion Protein EWS-FLI1

Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function

Parental Selenium Nutrition Affects the One-Carbon Metabolism and the Hepatic DNA Methylation Pattern of Rainbow Trout (Oncorhynchus mykiss) in the Progeny

DNA methylation QTL analysis identifies new regulators of human longevity

From Western Asia to the Mediterranean Basin: Diversification of the Widespread Euphorbia nicaeensis Alliance (Euphorbiaceae)

Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes

Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes

Evolutionary dynamics of Euphorbia carniolica suggest a complex Plio-Pleistocene history of understorey species of deciduous forest in southeastern Europe

Gene-based whole genome sequencing meta-analysis of 250 circulating proteins in three isolated European populations

Integrative Study of Genotypic and Phenotypic Diversity in the Eurasian Orchid Genus Neotinea


Confidential Consortium Framework: Secure Multiparty Applications with Confidentiality, Integrity, and High Availability

Guardian: Symbolic Validation of Orderliness in SGX Enclaves

Designing a Provenance Analysis for SGX Enclaves


Metabolome Annotation Workflow

MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry

Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities

Untargeted metabolomics to expand the chemical space of the marine diatom Skeletonema marinoi

Implementation of FAIR Practices in Computational Metabolomics Workflows - A Case Study

Analysis of Metabolomics and Transcriptomics Data to Assess Interactions in Microalgal Co-culture ofSkeletonema marinoiandPrymnesium parvum


RPD Pipelines

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Dynamic phenotypic heterogeneity and the evolution of multiple RNA subtypes in hepatocellular carcinoma: the PLANET study

Integrative Profiling of T790M-Negative EGFR-Mutated NSCLC Reveals Pervasive Lineage Transition and Therapeutic Opportunities

Clinical cancer research : an official journal of the American Association for Cancer Research


An NLP library for the Urdu language. It comes with a lot of battery included features to help you process Urdu data in the easiest way possible.

IndicTrans2: Towards High-Quality and Accessible Machine Translation Models for all 22 Scheduled Indian Languages

MECI: A Multilingual Dataset for Event Causality Identification

International Conference on Computational Linguistics

Zero-Shot Cross-Lingual Document-Level Event Causality Identification
  with Heterogeneous Graph Contrastive Transfer Learning


An open database of vertebrate-virus interactions

The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations

Mammal virus diversity estimates are unstable due to accelerating discovery effort

Viral genomic features predict orthopoxvirus reservoir hosts

bioRxiv : the preprint server for biology


SKIRT version 9 -- advanced radiative transfer in dusty systems

SKIRT 9: redesigning an advanced dust radiative transfer code to allow kinematics, line transfer and polarization by aligned dust grains

High-resolution synthetic UV-submm images for Milky Way-mass simulated galaxies from the ARTEMIS project

Monthly Notices of the Royal Astronomical Society

X-ray radiative transfer in full 3D with SKIRT

sígame v3: Gas Fragmentation in Postprocessing of Cosmological Simulations for More Accurate Infrared Line Emission Modeling

Effects of Spatial Discretization in Lyα Line Radiation Transfer Simulations


General Latent Feature Modeling for Heterogeneous data

Handling Incomplete Heterogeneous Data using VAEs

General Latent Feature Models for Heterogeneous Datasets

General Latent Feature Modeling for Data Exploration Tasks


Benchmark suite of test functions suitable for evaluating black-box optimization strategies

Optuna: A Next-generation Hyperparameter Optimization Framework

A Stratified Analysis of Bayesian Optimization Methods

Evaluation System for a Bayesian Optimization Service

Sequential Preference-Based Optimization

Modulating Surrogates for Bayesian Optimization


Snow Microwave Radiative Transfert model to compute thermal emission and backscatter from snowpack

SMRT: an active–passive microwave radiative transfer model for snow with multiple microstructure and scattering formulations (v1.0)

The Microwave Snow Grain Size: A New Concept to Predict Satellite Observations Over Snow‐Covered Regions

Forward modelling of synthetic-aperture radar (SAR) backscatter during lake ice melt conditions using the Snow Microwave Radiative Transfer (SMRT) model


An implementation of a simulated annealing sampler for general Ising model graphs in C++ with a dimod Python wrapper.

Qibo: a framework for quantum simulation with hardware acceleration

Benchmark of quantum-inspired heuristic solvers for quadratic unconstrained binary optimization

Quantum Annealing vs. QAOA: 127 Qubit Higher-Order Ising Problems on NISQ Computers

Application of QUBO solver using black-box optimization to structural design for resonance avoidance

Quantum annealing algorithms for Boolean tensor networks

An open-source modular framework for quantum computing

Simulations of frustrated Ising Hamiltonians using quantum approximate optimization

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Particle track reconstruction with noisy intermediate-scale quantum computers

Benchmarking Quantum(-Inspired) Annealing Hardware on Practical Use Cases

Sampling binary sparse coding QUBO models using a spiking neuromorphic processor


Posterior summarisation in Bayesian phylogenetics

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Systematic Culturomics Shows that Half of Chicken Caecal Microbiota Members can be Grown in Vitro Except for Two Lineages of Clostridiales and a Single Lineage of Bacteroidetes

New genera and species from the Equatorial Pacific provide phylogenetic insights into deep-sea Polynoidae (Annelida)

Zoological Journal of the Linnean Society

Different rates of pollen and seed gene flow cause branch‐length and geographic cytonuclear discordance within Asian butternuts

A Novel and Divergent Gyrovirus with Unusual Genomic Features Detected in Wild Passerine Birds from a Remote Rainforest in French Guiana

Genetic Characteristic and Global Transmission of Influenza A H9N2 Virus

Phylogeographic structure and ecological niche modelling reveal signals of isolation and postglacial colonisation in the European stag beetle

RADseq resolves the phylogeny of Hawaiian Myrsine (Primulaceae) and provides evidence for hybridization


Transformers learn in-context by gradient descent

Texture Generation with Neural Cellular Automata

μNCA: Texture Generation with Ultra-Compact Neural Cellular Automata

MPLP: Learning a Message Passing Learning Protocol

Growing Steerable Neural Cellular Automata


Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

GuacaMol: Benchmarking Models for De Novo Molecular Design

Journal of chemical information and modeling

Hierarchical Generation of Molecular Graphs using Structural Motifs

Language models can learn complex molecular distributions

A Model to Search for Synthesizable Molecules

Potent antibiotic design via guided search from antibacterial activity evaluations

Optimizing Functionals on the Space of Probabilities with Input Convex Neural Networks

Generative Chemical Transformer: Neural Machine Learning of Molecular Geometric Structures from Chemical Language via Attention

Targeting SARS-CoV-2 with AI- and HPC-enabled Lead Generation: A First Data Release

PETrans: De Novo Drug Design with Protein-Specific Encoding Based on Transfer Learning

International journal of molecular sciences


Smatch tool: evaluation of AMR semantic structures

Smatch: an Evaluation Metric for Semantic Feature Structures

Meeting of the Association for Computational Linguistics

Discourse Representation Structure Parsing

PROCEEDINGS OF THE 56TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL), VOL 1

XL-AMR: Enabling Cross-Lingual AMR Parsing with Transfer Learning Techniques

SGL: Speaking the Graph Languages of Semantic Parsing via Multilingual Translation

North American Chapter of the Association for Computational Linguistics

Fast semantic parsing with well-typedness guarantees

AMR Normalization for Fairer Evaluation

Multilingual Abstract Meaning Representation for Celtic Languages

T-STAR: Truthful Style Transfer using AMR Graph as Intermediate Representation

One Semantic Parser to Parse Them All: Sequence to Sequence Multi-Task Learning on Semantic Parsing Datasets

Exploring Graph-Algebraic CCG Combinators for Syntactic-Semantic AMR Parsing

Recent Advances in Natural Language Processing


Compact NUMA-aware Locks

BRAVO -- Biased Locking for Reader-Writer Locks

XOS: An Application-Defined Operating System for Data Center Servers

Isolate First, Then Share: a New OS Architecture for Datacenter Computing


Collection of tools to support submissions to the 3rd VIPriors workshop challenges

VIPriors 1: Visual Inductive Priors for Data-Efficient Deep Learning Challenges

VIPriors 2: Visual Inductive Priors for Data-Efficient Deep Learning Challenges

EfficientSeg: An Efficient Semantic Segmentation Network

VIPriors 3: Visual Inductive Priors for Data-Efficient Deep Learning Challenges


A Python framework for sequence labeling evaluation(named-entity recognition, pos tagging, etc...)

Improving Multilingual Models with Language-Clustered Vocabularies

Multi-Domain Goal-Oriented Dialogues (MultiDoGO): Strategies toward Curating and Annotating Large Scale Dialogue Data

Empirical Methods in Natural Language Processing

Indic-Transformers: An Analysis of Transformer Language Models for Indian Languages

Learning to Classify Intents and Slot Labels Given a Handful of Examples

No One Left Behind: Inclusive Federated Learning over Heterogeneous Devices

Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining

LINGUIST: Language Model Instruction Tuning to Generate Annotated Utterances for Intent Classification and Slot Tagging

PERT: Pre-training BERT with Permuted Language Model

Joint Chinese Word Segmentation and Part-of-speech Tagging via Multi-channel Attention of Character N-grams

Downstream Datasets Make Surprisingly Good Pretraining Corpora

Translate & Fill: Improving Zero-Shot Multilingual Semantic Parsing with Synthetic Data


Prediction of prophages from bacterial genomes

Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14

The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements

Whole genome analysis of host-associated lactobacillus salivarius and the effects on hepatic antioxidant enzymes and gut microorganisms of Sinocyclocheilus grahami

De Novo Sequencing Provides Insights Into the Pathogenicity of Foodborne Vibrio parahaemolyticus

Frontiers in cellular and infection microbiology

Genomic Diversity and Chromosomal Rearrangements in Neisseria gonorrhoeae and Neisseria meningitidis

Resistance to bacteriophage incurs a cost to virulence in drug-resistant Acinetobacter baumannii

Complete genome sequence of Streptomyces strain VNUA116, a potential biocontrol against phytopathogenic fusarium wilt fungus Fusarium oxysporum f. sp. cubense


Text-prompted Generative Audio Model - With the ability to clone voices

Neural Codec Language Models are Zero-Shot Text to Speech Synthesizers

AudioLM: a Language Modeling Approach to Audio Generation


The OCR approach is rephrased as Segmentation Transformer: https://arxiv.org/abs/1909.11065. This is an official implementation of semantic segmentation for HRNet. https://arxiv.org/abs/1908.07919

Deep High-Resolution Representation Learning for Human Pose Estimation

Deep High-Resolution Representation Learning for Visual Recognition

High-Resolution Representations for Labeling Pixels and Regions

Segmentation Transformer: Object-Contextual Representations for Semantic Segmentation

Multi-Scale Context Aggregation for Semantic Segmentation of Remote Sensing Images

CaDIS: Cataract Dataset for Image Segmentation

Image2Point: 3D Point-Cloud Understanding with 2D Image Pretrained Models

PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation

FP8 versus INT8 for efficient deep learning inference

Contour Transformer Network for One-Shot Segmentation of Anatomical Structures


A single-cell survey of Drosophila blood

Fast and precise single-cell data analysis using a hierarchical autoencoder

Human ALS/FTD brain organoid slice cultures display distinct early astrocyte and targetable neuronal pathology

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

Single-cell profiling reveals pathogenic role and differentiation trajectory of granzyme K+CD8+ T cells in primary Sjögren’s syndrome

Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer

Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages

Fast and precise single-cell data analysis using hierarchical autoencoder

Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis

Pigment cell progenitor heterogeneity and reiteration of developmental signaling underlie melanocyte regeneration in zebrafish


Transdiagnostic, Connectome-Based Prediction of Memory Constructs Across Psychiatric Disorders

Functional connectivity during frustration: a preliminary study of predictive modeling of irritability in youth

Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Large-Scale Functional Brain Networks of Maladaptive Childhood Aggression Identified by Connectome-Based Predictive Modeling

Reporting details of neuroimaging studies on individual traits prediction: A literature survey

Predicting response time variability from task and resting-state functional connectivity in the aging brain

Brain connectivity at rest predicts individual differences in normative activity during movie watching

Connectome-based predictive modeling shows sex differences in brain-based predictors of memory performance

An Electroencephalography Profile of Paroxysmal Kinesigenic Dyskinesia

Connectome caricatures: removing large-amplitude co-activation patterns in resting-state fMRI emphasizes individual differences

A Unified Framework for Inattention Estimation From Resting State Phase Synchrony Using Machine Learning


mbedtls-SGX: a SGX-friendly TLS stack (ported from mbedtls)

STACCO: Differentially Analyzing Side-Channel Traces for Detecting SSL/TLS Vulnerabilities in Secure Enclaves

Conference on Computer and Communications Security

Reaching Data Confidentiality and Model Accountability on the CalTrain

Towards Efficiently Establishing Mutual Distrust Between Host Application and Enclave for SGX

Speedster: A TEE-assisted State Channel System

Distributed systems and trusted execution environments: Trade-offs and challenges

Anais Estendidos do Simpósio Brasileiro de Redes de Computadores e Sistemas Distribuídos (SBRC Estendido 2020)


A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

The complete diploid reference genome of RPE-1 identifies human phased epigenetic landscapes


mean Average Precision - This code evaluates the performance of your neural net for object recognition.

Scenic: a language for scenario specification and data generation

An Asphalt Damage Dataset and Detection System Based on RetinaNet for Road Conditions Assessment

Retinopathy of Prematurity Stage Diagnosis Using Object Segmentation and Convolutional Neural Networks

Detection of Waste Containers Using Computer Vision

New Dark Area Sensitive Tone Mapping for Deep Learning Based Traffic Sign Recognition

Computational classification of animals for a highway detection system

Brazilian Journal of Veterinary Research and Animal Science

Ensembling object detectors for image and video data analysis

Sistem Pendeteksi Genus Gulma Pada Tanaman Jagung Menggunakan Algoritme Single Shot Detector

Robust In-Plane Structures Oscillation Monitoring by Terrestrial Photogrammetry


NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Database resources of the National Center for Biotechnology Information

Genomic Diversity, Antimicrobial Resistance, Plasmidome, and Virulence Profiles of Salmonella Isolated from Small Specialty Crop Farms Revealed by Whole-Genome Sequencing

Genomic analysis of diverse environmental Acinetobacter isolates identifies plasmids, antibiotic resistance genes, and capsular polysaccharides shared with clinical strains

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Exploring and retrieving sequence and metadata for species across the tree of life with NCBI Datasets

Optimization of Molecular Methods for Detecting Duckweed-Associated Bacteria

Resequencing and characterization of the first Corynebacterium pseudotuberculosis genome isolated from camel

Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness


Code for the paper "PixelCNN++: A PixelCNN Implementation with Discretized Logistic Mixture Likelihood and Other Modifications"

Conditional Image Generation with PixelCNN Decoders

PixelCNN++: Improving the PixelCNN with Discretized Logistic Mixture Likelihood and Other Modifications

Fixing a Broken ELBO

How good is my GAN?

Dual Supervised Learning

A Less Biased Evaluation of Out-of-distribution Sample Detectors

Improved ArtGAN for Conditional Synthesis of Natural Image and Artwork

An information-theoretic analysis of deep latent-variable models

Fast Generation for Convolutional Autoregressive Models

Does Your Model Know the Digit 6 Is Not a Cat? A Less Biased Evaluation of "Outlier" Detectors


Library for Knowledge Intensive Language Tasks

Retrieval Augmentation Reduces Hallucination in Conversation

KILT: a Benchmark for Knowledge Intensive Language Tasks

A Survey of Knowledge-enhanced Text Generation

Hurdles to Progress in Long-form Question Answering

Read before Generate! Faithful Long Form Question Answering with Machine Reading

Evidentiality-guided Generation for Knowledge-Intensive NLP Tasks

Fool Me Twice: Entailment from Wikipedia Gamification

Generating Information-Seeking Conversations from Unlabeled Documents

Reasoning over Public and Private Data in Retrieval-Based Systems

On the Influence of Masking Policies in Intermediate Pre-training


Tools for manipulating biological data, particularly multiple sequence alignments

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation

Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Methylartist: tools for visualizing modified bases from nanopore sequence data

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex


中文LLaMA-2 & Alpaca-2大模型二期项目 + 64K超长上下文模型 (Chinese LLaMA-2 & Alpaca-2 LLMs with 64K long context models)

Extending Context Window of Large Language Models via Positional Interpolation

Efficient and Effective Text Encoding for Chinese LLaMA and Alpaca

YaRN: Efficient Context Window Extension of Large Language Models

DISC-LawLLM: Fine-tuning Large Language Models for Intelligent Legal Services

Retrieve-Rewrite-Answer: A KG-to-Text Enhanced LLMs Framework for Knowledge Graph Question Answering

A Survey on Large Language Models for Critical Societal Domains:
  Finance, Healthcare, and Law

Conversational Recommender System and Large Language Model Are Made for Each Other in E-commerce Pre-sales Dialogue

TencentLLMEval: A Hierarchical Evaluation of Real-World Capabilities for Human-Aligned LLMs


CnOCR: Awesome Chinese/English OCR Python toolkits based on PyTorch. It comes with 20+ well-trained models for different application scenarios and can be used directly after installation. 【基于 PyTorch/MXNet 的中文/英文 OCR Python 包。】

PEIT: Bridging the Modality Gap with Pre-trained Models for End-to-End Image Translation

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Understanding Privacy Over-collection in WeChat Sub-app Ecosystem


Plotting scripts for long read sequencing data

Computational methods for 16S metabarcoding studies using Nanopore sequencing data

Computational and structural biotechnology journal

MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets

Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces

Benchmarking the MinION: Evaluating long reads for microbial profiling

DNA Barcoding of Nematodes Using the MinION

Systematic benchmarking of nanopore Q20+ kit in SARS-CoV-2 whole genome sequencing

Abundance tracking by long-read nanopore sequencing of complex microbial communities in samples from 20 different biogas/wastewater plants

Genomic Analysis of Aeromonas veronii C198, a Novel Mcr-3.41-Harboring Isolate from a Patient with Septicemia in Thailand

Population Genomic Approaches for Weed Science

A genome resource for Acacia, Australia’s largest plant genus


Working repository for Causal Tree and extensions

Recursive Partitioning for Heterogeneous Causal Effects

Estimating individual treatment effect: generalization bounds and algorithms

Generalization Bounds and Representation Learning for Estimation of Potential Outcomes and Causal Effects

A Unified Survey of Treatment Effect Heterogeneity Modelling and Uplift Modelling

Machine learning to analyze the social-ecological impacts of natural resource policy: insights from community forest management in the Indian Himalaya

A unified survey of treatment effect heterogeneity modeling and uplift modeling

A general framework for causal classification

International Journal of Data Science and Analytics

Heterogeneous Treatment Effects in Regression Discontinuity Designs

Identifying heterogeneity using recursive partitioning: evidence from SMS nudges encouraging voluntary retirement savings in Mexico

Evaluating company bankruptcies using causal forests


Creative Commons Attribution Share Alike 4.0 International

Sentinel Hub Cloud Detector for Sentinel-2 images in Python

Integrated use of Sentinel-1 and Sentinel-2 data and open-source machine learning algorithms for land cover mapping in a Mediterranean region

A census from heaven: Unraveling the potential of deep learning and Earth Observation for intra-urban population mapping in data scarce environments

International Journal of Applied Earth Observation and Geoinformation

Multi-temporal Crop Type and Field Boundary Classification with Google Earth Engine

Flood Detection On Low Cost Orbital Hardware

Semi-Supervised Urban Change Detection Using Multi-Modal Sentinel-1 SAR and Sentinel-2 MSI Data

Machine learning-ready remote sensing data for Maya archaeology

Teledetección aplicada al análisis de los impactos ecosistémicos generados por los incendios del año 2020 en la provincia de Córdoba, Argentina, e identificación de áreas prioritarias de restauración

FUSU: A Multi-temporal-source Land Use Change Segmentation Dataset for Fine-grained Urban Semantic Understanding


Pytorch version of - https://github.com/WaqasSultani/AnomalyDetectionCVPR2018

Real-world Anomaly Detection in Surveillance Videos

A MIL Approach for Anomaly Detection in Surveillance Videos from Multiple Camera Views

Detection of object throwing behavior in surveillance videos

International Conference on Image Processing, Applications and Systems


Hydrological Deep Learning

Enhancing Streamflow Forecast and Extracting Insights Using Long‐Short Term Memory Networks With Data Integration at Continental Scales

Exploring the exceptional performance of a deep learning stream temperature model and the value of streamflow data

Mitigating Prediction Error of Deep Learning Streamflow Models in Large Data-Sparse Regions With Ensemble Modeling and Soft Data

Continental-scale streamflow modeling of basins with reservoirs: Towards a coherent deep-learning-based strategy