R package hyperSpec can now be found at https://github.com/r-hyperspec/hyperSpec

Implementing the CRISPR/Cas9 Technology in Eucalyptus Hairy Roots Using Wood-Related Genes

International journal of molecular sciences

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations

Low biodegradability of dissolved organic matter from Southeast Asian peat-draining rivers

Journal of geophysical research. Biogeosciences

Revealing the Chemical Composition of Birch Pollen Grains by Raman Spectroscopic Imaging

Diffuse reflectance spectroscopy characterises the functional chemistry of soil organic carbon in agricultural soils

Methane Production Rate during Anoxic Litter Decomposition Depends on Si Mass Fractions, Nutrient Stoichiometry, and Carbon Quality

Effect of elevation, season and accelerated snowmelt on biogeochemical processes during isolated conifer needle litter decomposition


Forest is a library for analyzing smartphone-based high-throughput digital phenotyping data

A 'one-size-fits-most' walking recognition method for smartphones,
  smartwatches, and wearable accelerometers

Online Anomaly Detection for Smartphone-Based Multivariate Behavioral Time Series Data


Galaxy RNA workbench

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

RNA-bioinformatics: Tools, services and databases for the analysis of RNA-based regulation

The RNA workbench 2.0: next generation RNA data analysis

Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements


A package for combining dithered images into a single image

Palomar Gattini-IR: Survey Overview, Data Processing System, On-sky Performance and First Results

Publications of the Astronomical Society of the Pacific

From Images to Dark Matter: End-To-End Inference of Substructure From
  Hundreds of Strong Gravitational Lenses

The interstellar medium of high-redshift galaxies: Gathering clues from C III] and [C II] lines


Survival analysis built on top of scikit-learn

An Efficient Training Algorithm for Kernel Survival Support Vector Machines

Novel artificial intelligence machine learning approaches to precisely predict survival and site-specific recurrence in cervical cancer: A multi-institutional study

Neural Fine-Gray: Monotonic neural networks for competing risks


Python library to easily create and manipulate MOCs (Multi-Order Coverage maps)

The ASKAP Variables and Slow Transients (VAST) Pilot Survey

Radio Variable and Transient Sources on Minute Timescales in the ASKAP
  Pilot Surveys

Multi Order Coverage data structure to plan multi-messenger observations


Tool to look for several security related Android application vulnerabilities

An Empirical Assessment of Global COVID-19 Contact Tracing Applications

A Study on the Vulnerabilities of Mobiles Apps associated with Software Modules

Are free Android app security analysis tools effective in detecting known vulnerabilities?

Evaluation of Static Vulnerability Detection Tools With Java Cryptographic API Benchmarks

Vulnerabilities in IoT Devices for Smart Home Environment

PROCEEDINGS OF THE 5TH INTERNATIONAL CONFERENCE ON INFORMATION SYSTEMS SECURITY AND PRIVACY (ICISSP)

Why Crypto-detectors Fail: A Systematic Evaluation of Cryptographic Misuse Detection Techniques

FirmwareDroid: Security Analysis of the Android Firmware EcoSystem


Web API to easily access satellite-based emission data


Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

Neural Ordinary Differential Equations

Latent ODEs for Irregularly-Sampled Time Series

Augmented Neural ODEs

Score-based Generative Modeling in Latent Space

Neural Controlled Differential Equations for Irregular Time Series

On Neural Differential Equations

On Robustness of Neural Ordinary Differential Equations

Augmenting physical models with deep networks for complex dynamics forecasting

Neural Rough Differential Equations for Long Time Series

Adaptive Checkpoint Adjoint Method for Gradient Estimation in Neural ODE


PrediXcan Project

Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues

Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer

Transcriptome-wide association studies: a view from Mendelian randomization

Bid maintains mitochondrial cristae structure and function and protects against cardiac disease in an integrative genomics study

Integration of Machine Learning Methods to Dissect Genetically Imputed Transcriptomic Profiles in Alzheimer’s Disease

A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women

Brain Banks Spur New Frontiers in Neuropsychiatric Research and Strategies for Analysis and Validation

基因组蛋白质组与生物信息学报

PrediXcan: Trait Mapping Using Human Transcriptome Regulation

Another Round of “Clue” to Uncover the Mystery of Complex Traits

SLINGER: large-scale learning for predicting gene expression


A library for experimenting with, training and evaluating neural networks, with a focus on adversarial robustness.

Adversarial Examples Are Not Bugs, They Are Features

Reliable evaluation of adversarial robustness with an ensemble of diverse parameter-free attacks

Overfitting in adversarially robust deep learning

RobustBench: a standardized adversarial robustness benchmark

Measuring Robustness to Natural Distribution Shifts in Image Classification

Do Adversarially Robust ImageNet Models Transfer Better?

Uncovering the Limits of Adversarial Training against Norm-Bounded Adversarial Examples

Adversarial Robustness as a Prior for Learned Representations

Theoretical Analysis of Self-Training with Deep Networks on Unlabeled Data

Simulating a Primary Visual Cortex at the Front of CNNs Improves Robustness to Image Perturbations


TRAM is an open-source platform designed to advance research into automating the mapping of cyber threat intelligence reports to MITRE ATT&CK®.

Cybersecurity Threat Hunting and Vulnerability Analysis Using a Neo4j
  Graph Database of Open Source Intelligence


Library for Model Based RL

Deep Reinforcement Learning in a Handful of Trials using Probabilistic Dynamics Models

MBRL-Lib: A Modular Library for Model-based Reinforcement Learning

Learning Accurate Long-term Dynamics for Model-based Reinforcement Learning

Model-Advantage and Value-Aware Models for Model-Based Reinforcement
  Learning: Bridging the Gap in Theory and Practice

Simplified Temporal Consistency Reinforcement Learning


Python implementation of behaviour trees.

A Survey of Behavior Trees in Robotics and AI

Behavior Trees in Action: A Study of Robotics Applications

Combining Planning and Learning of Behavior Trees for Robotic Assembly

Efficiently Evolving Swarm Behaviors Using Grammatical Evolution With
  PPA-style Behavior Trees

BeBOP -- Combining Reactive Planning and Bayesian Optimization to Solve
  Robotic Manipulation Tasks

Flexible Behavior Trees: In search of the mythical HFSMBTH for
  Collaborative Autonomy in Robotics

Distributed Behavior Trees for Heterogeneous Robot Teams


A machine learning toolkit for log parsing [ICSE'19, DSN'16]

Tools and Benchmarks for Automated Log Parsing

Log-based Anomaly Detection Without Log Parsing

Log-based Anomaly Detection with Deep Learning: How Far Are We?

Proceedings of the 44th International Conference on Software Engineering

Self-Supervised Log Parsing

Multi-Scale One-Class Recurrent Neural Networks for Discrete Event Sequence Anomaly Detection

UniParser: A Unified Log Parser for Heterogeneous Log Data

A Directed Acyclic Graph Approach to Online Log Parsing

Log Parsing with Prompt-based Few-shot Learning

Log Parsing: How Far Can ChatGPT Go?

A Comprehensive Survey of Logging in Software: From Logging Statements
  Automation to Log Mining and Analysis


FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Fast and accurate de novo genome assembly from long uncorrected reads

Phased diploid genome assembly with single-molecule real-time sequencing

Multi-platform discovery of haplotype-resolved structural variation in human genomes

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm

De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter

Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data


IEEE 802.11 a/g/p Transceiver

Fair Coexistence of Scheduled and Random Access Wireless Networks: Unlicensed LTE/WiFi

Channel Measurement and Feasibility Test for Wireless Avionics Intra-Communications

Colosseum as a Digital Twin: Bridging Real-World Experimentation and Wireless Network Emulation

Transparent and Tamper-Proof Event Ordering in the Internet of Things Platforms


DARPA Challenges Sets for Linux, Windows, and macOS

NEUZZ: Efficient Fuzzing with Neural Program Smoothing

Magma: A Ground-Truth Fuzzing Benchmark

Proceedings of the ACM on measurement and analysis of computing systems

Adaptive Grey-Box Fuzz-Testing with Thompson Sampling

Proceedings of the 11th ACM Workshop on Artificial Intelligence and Security

Improving Grey-Box Fuzzing by Modeling Program Behavior

Evolutionary Mutation-based Fuzzing as Monte Carlo Tree Search


syzkaller is an unsupervised coverage-guided kernel fuzzer

The Art, Science, and Engineering of Fuzzing: A Survey

SlowFuzz: Automated Domain-Independent Detection of Algorithmic Complexity Vulnerabilities

Conference on Computer and Communications Security

Frankenstein: Advanced Wireless Fuzzing to Exploit New Bluetooth Escalation Targets

GPTFUZZER: Red Teaming Large Language Models with Auto-Generated
  Jailbreak Prompts

Fuzzing Hardware Like Software

Automated Detection, Exploitation, and Elimination of Double-Fetch Bugs using Modern CPU Features

STADS: Software Testing as Species Discovery

An Empirical Study of OSS-Fuzz Bugs

Fuzz4All: Universal Fuzzing with Large Language Models

SyzScope: Revealing High-Risk Security Impacts of Fuzzer-Exposed Bugs in Linux kernel


Just Another JAva Package for Sequence Analysis

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing

Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing

Pseudo-Chromosomal Genome Assembly in Combination with Comprehensive Transcriptome Analysis in Agaricus bisporus Strain KMCC00540 Reveals Mechanical Stimulus Responsive Genes Associated with Browning Effect

MicroPIPE: An end-to-end solution for high-quality complete bacterial genome construction


TreeMapper extends the Plant-for-the-Planet Platform and allows on site data registration for restoration initiatives.


This is the official code repository for MUSIC, a (3+1)D hydrodynamic code package for relativistic heavy-ion collisions

Running the gamut of high energy nuclear collisions

Beam-energy dependence of the production of light nuclei in Au + Au collisions

Deuteron production in AuAu collisions at sNN=7–200 GeV via pion catalysis

3D structure of anisotropic flow in small collision systems at energies available at the BNL Relativistic Heavy Ion Collider

Resonance production in PbPb collisions at 5.02 TeV via hydrodynamics and hadronic afterburner

Impact of fluctuating initial conditions on bottomonium suppression in 5.02 TeV heavy-ion collisions


Open source software for medical image processing from the Empenn team

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Unsupervised Domain Adaptation With Optimal Transport in Multi-Site Segmentation of Multiple Sclerosis Lesions From MRI Data

Boutiques: a flexible framework to integrate command-line applications in computing platforms

Evaluation of distortion correction methods in diffusion MRI of the spinal cord

Evaluation of Six Phase Encoding Based Susceptibility Distortion Correction Methods for Diffusion MRI

Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure

Medical Image Computing and Computer-Assisted Intervention

Multiparametric Analysis of Cerebral Development in Preterm Infants Using Magnetic Resonance Imaging

Boutiques: a flexible framework for automated application integration in computing platforms

A three year follow-up study of gadolinium enhanced and non-enhanced regions in multiple sclerosis lesions using a multi-compartment T2 relaxometry model

Connectivity patterns of the core resting-state networks associated with apathy in late-life depression

Journal of psychiatry & neuroscience : JPN


Cytoscape: an open source platform for network analysis and visualization

Characteristics of the Gut Microbiota and Metabolism in Patients With Latent Autoimmune Diabetes in Adults: A Case-Control Study

Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity

Integrated bioinformatics analysis of the association between apolipoprotein E expression and patient prognosis in papillary thyroid carcinoma

Integrating Network Pharmacology and Molecular Docking to Analyse the Potential Mechanism of action of Macleaya cordata (Willd.) R. Br. in the Treatment of Bovine Hoof Disease

A proteomic and RNA-seq transcriptomic dataset of capsaicin-aggravated mouse chronic colitis model

Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group

Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers

DNA methylome and transcriptome profiling reveal key electrophysiology and immune dysregulation in hypertrophic cardiomyopathy

UKP-SQuARE v2: Explainability and Adversarial Attacks for Trustworthy QA

Brain radiotoxicity-related 15CAcBRT gene expression signature predicts survival prognosis of glioblastoma patients


Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Structure and function of axo-axonic inhibition

Petascale neural circuit reconstruction: automated methods

Developmental Rewiring between Cerebellar Climbing Fibers and Purkinje Cells Begins with Positive Feedback Synapse Addition

Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling


A semidefinite program solver for the conformal bootstrap.

TASI Lectures on the Conformal Bootstrap

A Semidefinite Program Solver for the Conformal Bootstrap

The Journal of high energy physics/The journal of high energy physics

Carving out OPE space and precise O(2) model critical exponents

Scaling the semidefinite program solver SDPB

Weizmann Lectures on the Numerical Conformal Bootstrap

autoboot: a generator of bootstrap equations with global symmetry

The Gross-Neveu-Yukawa archipelago

Bootstrapping mixed correlators in N
    ��
 = 4 super Yang-Mills

OPE coefficients in Argyres-Douglas theories

An Automated Generation of Bootstrap Equations for Numerical Study of Critical Phenomena


The Chuffed CP solver

A Survey on String Constraint Solving

Specification and Automated Analysis of Inter-Parameter Dependencies in Web APIs

The optimality of syntactic dependency distances

New First-Order Secure AES Performance Records

IACR transactions on cryptographic hardware and embedded systems

Quantum-accelerated constraint programming

Scalable optimal deployment in the cloud of component-based applications using optimization modulo theory, mathematical programming and symmetry breaking

The Journal of logical and algebraic methods in programming/Journal of logical and algebraic methods in programming

Mind Your Path: On (Key) Dependencies in Differential Characteristics

IACR transaction on symmetric cryptology

Cable tree wiring - benchmarking solvers on a real-world scheduling problem with a variety of precedence constraints

Automating Cluster Management with Weave.

Partially Preemptive Multi Skill/Mode Resource-Constrained Project Scheduling with Generalized Precedence Relations and Calendars

International Conference on Principles and Practice of Constraint Programming


Count the MACs / FLOPs of your PyTorch model.

Diffusion Models Beat GANs on Image Synthesis

Green AI

The Temporal Opportunist: Self-Supervised Multi-Frame Monocular Depth

HyperSeg: Patch-wise Hypernetwork for Real-time Semantic Segmentation

Epipolar Transformers

Surface Representation for Point Clouds

Towards Automated Neural Interaction Discovery for Click-Through Rate Prediction

Person Re-Identification via Attention Pyramid

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Text Style Transfer: A Review and Experimental Evaluation

Ultra-Lightweight Speech Separation via Group Communication


:chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae

Endogenous topoisomerase II-mediated DNA breaks drive thymic cancer predisposition linked to ATM deficiency

Mpe1 senses the binding of pre-mRNA and controls 3′ end processing by CPF


RobustBench: a standardized adversarial robustness benchmark [NeurIPS'21 Benchmarks and Datasets Track]

Helper-based Adversarial Training: Reducing Excessive Margin to Achieve a Better Accuracy vs. Robustness Trade-off

International Conference on Machine Learning

Stable Neural ODE with Lyapunov-Stable Equilibrium Points for Defending Against Adversarial Attacks

A Winning Hand: Compressing Deep Networks Can Improve Out-Of-Distribution Robustness

Attacking Adversarial Attacks as A Defense

Enhance the Visual Representation via Discrete Adversarial Training

If your data distribution shifts, use self-learning

Towards Evaluating the Robustness of Neural Networks Learned by Transduction

DISCO: Adversarial Defense with Local Implicit Functions

Meta-Learning the Search Distribution of Black-Box Random Search Based Adversarial Attacks


An automated machine learning tool aimed to facilitate AutoML research.

Online AutoML: an adaptive AutoML framework for online learning

GAMA: a General Automated Machine learning Assistant


modAL: A modular active learning framework for Python

Boosting API Recommendation With Implicit Feedback

IEEE transactions on software engineering

Recognizing lines of code violating company-specific coding guidelines using machine learning

Practical galaxy morphology tools from deep supervised representation learning

Seeing and Believing: Evaluating the Trustworthiness of Twitter Users

Active Learning Training Strategy for Predicting O Adsorption Free Energy on Perovskite Catalysts using Inexpensive Catalyst Features

Ground Truth Inference for Weakly Supervised Entity Matching

Deep reinforced active learning for multi-class image classification

Active Learning Framework to Automate NetworkTraffic Classification

Are Good Explainers Secretly Human-in-the-Loop Active Learners?


Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Functional genomic landscape of acute myeloid leukaemia

Genome doubling shapes the evolution and prognosis of advanced cancers

Building 3D Piping Models

Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture

The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales

Uniform genomic data analysis in the NCI Genomic Data Commons

Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes

Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

Genomic profile of advanced breast cancer in circulating tumour DNA

The mutational landscape of recurrent versus nonrecurrent human papillomavirus–related oropharyngeal cancer


Creative Commons Attribution Share Alike 4.0 International

This book will be an undergraduate textbook written in the univalent style, taking advantage of the presence of symmetry in the logic at an early stage.

Synthetic fibered (∞,1)-category theory

On Small Types in Univalent Foundations

Central H-spaces and banded types

Eilenberg-MacLane spaces and stabilisation in homotopy type theory

Domain Theory in Constructive and Predicative Univalent Foundations


An asynchronous programming facility for Scala

Implementing a Language for Distributed Systems: Choices and Experiences with Type Level and Macro Programming in Scala

The art, science, and engineering of programming

On the Soundness of Coroutines with Snapshots


Climate science package for Julia


Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases

Ontology-Based Querying with Bio2RDF’s Linked Open Data

The health care and life sciences community profile for dataset descriptions

Automatically exposing OpenLifeData via SADI semantic Web Services

Construction of Knowledge Graphs: State and Challenges

Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting

Do Developers Refactor Data Access Code? An Empirical Study


fastdup is a powerful free tool designed to rapidly extract valuable insights from your image & video datasets. Assisting you to increase your dataset images & labels quality and reduce your data operations costs at an unparalleled scale.

SelfClean: A Self-Supervised Data Cleaning Strategy

Towards Reliable Dermatology Evaluation Benchmarks


A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

Loop extrusion as a mechanism for formation of DNA damage repair foci

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma

Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1

Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes

A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome

High-resolution genetic mapping of putative causal interactions between regions of open chromatin

Cohesin residency determines chromatin loop patterns

Inferring microbiota functions from taxonomic genes: a review


A social networking service scraper in Python

An analysis of COVID-19 vaccine sentiments and opinions on Twitter

International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Can ChatGPT Reproduce Human-Generated Labels? A Study of Social
  Computing Tasks

L3CubeMahaSent: A Marathi Tweet-based Sentiment Analysis Dataset

Examining Public Sentiments and Attitudes Toward COVID-19 Vaccination: Infoveillance Study Using Twitter Posts

Investigating the Emotional Response to COVID-19 News on Twitter: A Topic Modeling and Emotion Classification Approach

COVID-19, climate change, and the finite pool of worry in 2019 to 2021 Twitter discussions

Proceedings of the National Academy of Sciences of the United States of America

Mining Trends of COVID-19 Vaccine Beliefs on Twitter with Lexical Embeddings

AI Ethics on Blockchain: Topic Analysis on Twitter Data for Blockchain
  Security

Disinformation creep: ADOS and the strategic weapon-ization of breaking news

Harvard Kennedy School Misinformation Review

FANG-COVID: A New Large-Scale Benchmark Dataset for Fake News Detection in German

Proceedings of the Fourth Workshop on Fact Extraction and VERification (FEVER)


Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice

Emergence of Vancomycin-Resistant Enterococcus faecium at an Australian Hospital: A Whole Genome Sequencing Analysis

Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation

European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016

Genomic and phenotypic characterisation of invasive neonatal and colonising group B Streptococcus isolates from Slovenia, 2001–2018

Flies from a tertiary hospital in Rwanda carry multidrug-resistant Gram-negative pathogens including extended-spectrum beta-lactamase-producing E. coli sequence type 131

Antimicrobial resistance and infection control

Multidrug-resistant Neisseria gonorrhoeae isolate SE690: mosaic penA-60.001 gene causing ceftriaxone resistance internationally has spread to the more antimicrobial-susceptible genomic lineage, Sweden, September 2022

State-Wide Genomic and Epidemiological Analyses of Vancomycin-Resistant Enterococcus faecium in Tasmania’s Public Hospitals


Image augmentation library in Python for machine learning.

Augmentor: An Image Augmentation Library for Machine Learning

Generative Adversarial Networks for Image Augmentation in Agriculture: A
  Systematic Review

A comparative study of the effectiveness of using popular DNN object detection algorithms for pith detection in cross-sectional images of parawood

BrainQCNet: a Deep Learning attention-based model for the automated detection of artifacts in brain structural MRI scans

Face Phylogeny Tree Using Basis Functions

Patch augmentation: Towards efficient decision boundaries for neural networks

Measuring the spectral index of turbulent gas with deep learning from projected density maps

Monthly Notices of the Royal Astronomical Society

Scalable Modular Synthetic Data Generation for Advancing Aerial Autonomy


Vitis HLS Library for FINN

Memory-Efficient Dataflow Inference for Deep CNNs on FPGA

HALF: Holistic Auto Machine Learning for FPGAs

International Conference on Field-Programmable Logic and Applications

Embedded Object Detection with Custom LittleNet, FINN and Vitis AI DCNN Accelerators

Journal of low power electronics and applications

Hardware-Efficient Deconvolution-Based GAN for Edge Computing


Data set of top third party web domains with rich metadata about them

FP-Radar: Longitudinal Measurement and Early Detection of Browser
  Fingerprinting

Privacy Rarely Considered: Exploring Considerations in the Adoption of
  Third-Party Services by Websites


CHARMM and AMBER forcefields for OpenMM (with small molecule support)

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

Journal of chemical theory and computation

Using AMBER18 for Relative Free Energy Calculations

Journal of chemical information and modeling

The dynamic conformational landscape of the protein methyltransferase SETD8

End-to-End Differentiable Molecular Mechanics Force Field Construction

The Dynamic Conformational Landscapes of the Protein Methyltransferase SETD8

Machine-learned molecular mechanics force field for the simulation of
  protein-ligand systems and beyond


View model summaries in PyTorch!

Resolution Learning in Deep Convolutional Networks Using Scale-Space Theory

Packed-Ensembles for Efficient Uncertainty Estimation

Rail Detection: An Efficient Row-based Network and A New Benchmark

Exploring Vanilla U-Net for Lesion Segmentation from Whole-body
  FDG-PET/CT Scans

Deep Learning based Data Prefetching in CPU-GPU Unified Virtual Memory

Fast FullSubNet: Accelerate Full-band and Sub-band Fusion Model for
  Single-channel Speech Enhancement

An Intelligent Framework for Oversubscription Management in CPU-GPU Unified Memory


The hub for EleutherAI's work on interpretability and learning dynamics

Pythia: A Suite for Analyzing Large Language Models Across Training and
  Scaling

Finding Neurons in a Haystack: Case Studies with Sparse Probing

Emergent and Predictable Memorization in Large Language Models

The Quantization Model of Neural Scaling

Datasheet for the Pile

Transformer models: an introduction and catalog

Building Real-World Meeting Summarization Systems using Large Language Models: A Practical Perspective

Layerwise Linear Mode Connectivity

FedMLSecurity: A Benchmark for Attacks and Defenses in Federated Learning and Federated LLMs

Reverse-Engineering Decoding Strategies Given Blackbox Access to a Language Generation System


Astronomy & Astrophysics Software Pacakge

The Large Array Survey Telescope—System Overview and Performances

The Large Array Survey Telescope—Science Goals

The Large Array Survey Telescope -- Pipeline. I. Basic image reduction
  and visit coaddition


Repository for the Framework for Accessing Changes To Sea-level (FACTS)


CFE is a conceptual rainfall-runoff model with an implementation of the Basic Model Interface.


Geometry Processing Library for Python

Controlling the error on target motion through real‐time mesh adaptation: Applications to deep brain stimulation

International journal for numerical methods in biomedical engineering

Hex-Mesh Generation and Processing: A Survey

Corticothalamic feedback sculpts visual spatial integration in mouse thalamus

Shape analysis of railway ballast stones: curvature-based calculation of particle angularity

PIEMAP: Personalized Inverse Eikonal Model from Cardiac Electro-Anatomical Maps

Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges

InSphereNet: a Concise Representation and Classification Method for 3D Object

Surface Reconstruction from Structured Light Images Using Differentiable Rendering

Learning Harmonic Molecular Representations on Riemannian Manifold

Composing Music Inspired by Sculpture: A Cross-Domain Mapping and Genetic Algorithm Approach

MULTI-MODAL SEMANTIC MESH SEGMENTATION IN URBAN SCENES

XXIV ISPRS CONGRESS IMAGING TODAY, FORESEEING TOMORROW, COMMISSION II


Repository for the development and release of ISRaD data and tools


Localize and identify multiple objects in a single image.

Microsoft COCO: Common Objects in Context

MobileNets: Efficient Convolutional Neural Networks for Mobile Vision Applications

Speed/accuracy trade-offs for modern convolutional object detectors


DCA++

DFT+DMFT calculations of the band gap and the transmission decay rate for the transition metal monoxides MnO, FeO, CoO and NiO

DCA++: A software framework to solve correlated electron problems with modern quantum cluster methods

Orbital structure of the effective pairing interaction in the high-temperature superconducting cuprates

Pairfield fluctuations of a 2D Hubbard model

1/4 is the new 1/2 when topology is intertwined with Mottness

Superconductivity in the bilayer Hubbard model: Two Fermi surfaces are better than one

Characterizing the superconducting instability in a two-orbital d-s
  model: insights to infinite-layer nickelate superconductors

Superconductivity in the Bilayer Two-orbital Hubbard Model

Robust charge-density-wave correlations in the electron-doped single-band Hubbard model

Memory reduction using a ring abstraction over GPU RDMA for distributed quantum Monte Carlo solver


massively-parallel cosmology simulator

Strong Bound on Canonical Ultralight Axion Dark Matter from the Lyman-Alpha Forest

Modeling biased tracers at the field level

Bayesian emulator optimisation for cosmology: application to the Lyman-alpha forest

Journal of Cosmology and Astroparticle Physics

An efficient and accurate hybrid method for simulating non-linear neutrino structure

Monthly notices of the Royal Astronomical Society

The ASTRID simulation: the evolution of Supermassive Black Holes

An Emulator for the Lyman-alpha Forest

The ASTRID simulation: galaxy formation and reionization

An emulator for the Lyman-α forest in beyond-ΛCDM cosmologies

New limits on light dark matter - proton cross section from the cosmic
  large-scale structure

General framework for cosmological dark matter bounds using
N
-body simulations


Python for Materials Machine Learning, Materials Descriptors, Machine Learning Force Fields, Deep Learning, etc.

Performance and Cost Assessment of Machine Learning Interatomic Potentials

The journal of physical chemistry. A/The journal of physical chemistry. A.

Accelerating materials discovery with Bayesian optimization and graph deep learning

Bridging the gap between simulated and experimental ionic conductivities in lithium superionic conductors

A Universal Machine Learning Model for Elemental Grain Boundary Energies

The Intercalation Chemistry of the Disordered RockSalt Li3V2O5 Anode
  from Cluster Expansions and Machine Learning Interatomic Potentials

Robust Training of Machine Learning Interatomic Potentials with
  Dimensionality Reduction and Stratified Sampling

Discovery of 2D Materials using Transformer Network‐Based Generative Design


Model parallel transformers in JAX and Haiku

PaLM: Scaling Language Modeling with Pathways

On the Opportunities and Risks of Foundation Models

Large Language Models are Zero-Shot Reasoners

Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism

Survey of Hallucination in Natural Language Generation

A Survey of Large Language Models

Beyond the Imitation Game: Quantifying and extrapolating the
  capabilities of language models

GLM-130B: An Open Bilingual Pre-trained Model

CodeGen: An Open Large Language Model for Code with Multi-Turn Program
  Synthesis

Direct Preference Optimization: Your Language Model is Secretly a Reward
  Model


Large, modern dataset for speech recognition

GigaSpeech: An Evolving, Multi-domain ASR Corpus with 10,000 Hours of Transcribed Audio

VATLM: Visual-Audio-Text Pre-Training with Unified Masked Prediction for
  Speech Representation Learning

GigaST: A 10,000-hour Pseudo Speech Translation Corpus

Complex Mapping between Neural Response Frequency and Linguistic Units in Natural Speech


Python version of Sudachi, a Japanese tokenizer.

Sudachi: a Japanese Tokenizer for Business

PROCEEDINGS OF THE ELEVENTH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2018)

fugashi, a Tool for Tokenizing Japanese in Python

Talking Face Generation with Multilingual TTS


Source code/webpage/demos for the What-If Tool

The What-If Tool: Interactive Probing of Machine Learning Models

IEEE transactions on visualization and computer graphics

Benchmarking and survey of explanation methods for black box models

Towards a multi-stakeholder value-based assessment framework for algorithmic systems

Conference on Fairness, Accountability and Transparency

Ethically Responsible Machine Learning in Fintech

Leverage zones in Responsible AI: towards a systems thinking conceptualization

Humanities and Social Sciences Communications

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry


A minimalist tree plotting library using toyplot graphs

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Feasibility and clinical utility of local rapid Nanopore influenza A virus whole genome sequencing for integrated outbreak management, genotypic resistance detection and timely surveillance


Code for building ConceptNet from raw data.

Augmenting End-to-End Dialog Systems with Commonsense Knowledge

KG-BART: Knowledge Graph-Augmented BART for Generative Commonsense Reasoning

EVALution 1.0: an Evolving Semantic Dataset for Training and Evaluation of Distributional Semantic Models

Proceedings of the 4th Workshop on Linked Data in Linguistics: Resources and Applications

CSKG: The CommonSense Knowledge Graph

Dimensions of Commonsense Knowledge

Assessing Demographic Bias in Named Entity Recognition

What's Missing: A Knowledge Gap Guided Approach for Multi-hop Question Answering

Neuro-Symbolic Procedural Planning with Commonsense Prompting

KACE: Generating Knowledge Aware Contrastive Explanations for Natural Language Inference

Meeting of the Association for Computational Linguistics

Commonsense Knowledge in Wikidata


Examples for coroutines design in Kotlin

Putting in All the Stops: Execution Control for JavaScript

Fast and Scalable Channels in Kotlin Coroutines

CQS: A Formally-Verified Framework for Fair and Abortable Synchronization


Edudata: Datasets in Education and convenient interface for downloading and preprocessing dataset in education

A Survey of Knowledge Tracing

Fully Adaptive Framework: Neural Computerized Adaptive Testing for Online Education

THIRTY-SIXTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FOURTH CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE / THE TWELVETH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Efficiently Measuring the Cognitive Ability of LLMs: An Adaptive Testing
  Perspective


High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

Embedding Entities and Relations for Learning and Inference in Knowledge Bases

RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space

DGL-KE: Training Knowledge Graph Embeddings at Scale

LibKGE - A knowledge graph embedding library for reproducible research

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING: SYSTEM DEMONSTRATIONS

Inference Attacks Against Graph Neural Networks

Marius: Learning Massive Graph Embeddings on a Single Machine

A Survey on the Use of Graph Convolutional Networks for Combating Fake News

The DLCC Node Classification Benchmark for Analyzing Knowledge Graph Embeddings

μKG: A Library for Multi-source Knowledge Graph Embeddings
  and Applications

Knowledge Graph Completion with Counterfactual Augmentation


GPU-based Onion Hash generator

Classifying Illegal Activities on Tor Network Based on Web Textual Contents

Conference of the European Chapter of the Association for Computational Linguistics

Identifying and characterizing Sybils in the Tor network

How Do Tor Users Interact With Onion Services?

Anomalous keys in Tor relays


Just another Hearthstone Simulator in C# .Net Core, with some A.I. approaches!

Mapping Hearthstone Deck Spaces through MAP-Elites with Sliding Boundaries

Improving Hearthstone AI by Combining MCTS and Supervised Learning Algorithms

Evolving the Hearthstone Meta

The Many AI Challenges of Hearthstone


:mag: LLM orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.

Dense Passage Retrieval for Open-Domain Question Answering

Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks

REALM: Retrieval-Augmented Language Model Pre-Training

Towards Leaving No Indic Language Behind: Building Monolingual Corpora, Benchmark and Models for Indic Languages

RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION

Asking questions on handwritten document collections

International journal on document analysis and recognition

Prompting Frameworks for Large Language Models: A Survey

Cross-document Event Coreference Search: Task, Dataset and Modeling

How to Build Robust FAQ Chatbot with Controllable Question Generator?

Fabricator: An Open Source Toolkit for Generating Labeled Training Data with Teacher LLMs


The open-source tool for creating 3D models

Population Estimation Using a 3D City Model: A Multi-Scale Country-Wide Study in the Netherlands

Reference study of IFC software support: The GeoBIM benchmark 2019—Part I

CityJSON Building Generation from Airborne LiDAR 3D Point Clouds

ISPRS international journal of geo-information

Estimating Building Age with 3D GIS

ISPRS annals of the photogrammetry, remote sensing and spatial information sciences

Harmonising the OGC Standards for the Built Environment: A CityGML Extension for LandInfra

A Cost-Effective Method for Reconstructing City-Building 3D Models from Sparse Lidar Point Clouds

AN IMPROVED LOD FRAMEWORK FOR THE TERRAINS IN 3D CITY MODELS

INTERACTIVE 3D CITY VISUALIZATION FROM STRUCTURE MOTION DATA USING GAME ENGINE

The international archives of the photogrammetry, remote sensing and spatial information sciences/International archives of the photogrammetry, remote sensing and spatial information sciences

An Efficient 2.5D Shadow Detection Algorithm for Urban Planning and Design Using a Tensor Based Approach


Unrolled Generative Adversarial Networks

Self-Supervised Learning of Depth and Camera Motion from 360° Videos

Self-view Grounding Given a Narrated 360 Video


Wildfire Predictive Services to support decision making in prevention, preparedness, response and recovery


Wind Energy with Integrated Servo-controls Toolset

Land-based wind turbines with flexible rail transportable blades – Part I: Conceptual design and aeroservoelastic performance


ETH Robustness Analyzer for Deep Neural Networks

Reluplex: An Efficient SMT Solver for Verifying Deep Neural Networks

Algorithms for Verifying Deep Neural Networks

Beta-CROWN: Efficient Bound Propagation with Per-neuron Split Constraints for Neural Network Robustness Verification

The Second International Verification of Neural Networks Competition (VNN-COMP 2021): Summary and Results

Improved Geometric Path Enumeration for Verifying ReLU Neural Networks

Enabling certification of verification-agnostic networks via memory-efficient semidefinite programming

The Convex Relaxation Barrier, Revisited: Tightened Single-Neuron Relaxations for Neural Network Verification

PRIMA: general and precise neural network certification via scalable convex hull approximations

Proceedings of the ACM on programming languages

DeepAbstract: Neural Network Abstraction for Accelerating Verification

Partition-based formulations for mixed-integer optimization of trained ReLU neural networks


GeoClimate: a Geospatial processing toolbox for environmental and climate studies


BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

Inferring microbiota functions from taxonomic genes: a review

Twelve quick steps for genome assembly and annotation in the classroom

BRAKER3: Fully automated genome annotation using RNA-Seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.

bioRxiv : the preprint server for biology

Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)

Foster thy young: enhanced prediction of orphan genes in assembled genomes

Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1

Defining the ‘HoneySweet’ insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica)

Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite’s Biosynthesis and Medicinal Application

A De Novo Chromosome-Level Genome Assembly of the White-Tailed Deer, Odocoileus Virginianus


Python Package for the Analysis of Paleoclimate Data. Documentation at


common in-memory tensor structure

PyTorch: An Imperative Style, High-Performance Deep Learning Library

Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph
  Neural Networks

Machine Learning in Python: Main developments and technology trends in
  data science, machine learning, and artificial intelligence

Bringing UMAP Closer to the Speed of Light with GPU Acceleration

GPU Accelerated Exhaustive Search for Optimal Ensemble of Black-Box
  Optimization Algorithms

A memory-efficient neural ODE framework based on high-level adjoint
  differentiation

SOL: Effortless Device Support for AI Frameworks without Source Code Changes

PySAGES: flexible, advanced sampling methods accelerated with GPUs


Analysis components from Oxford Nanopore Research

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

Novel Insights and Features of the NDM-5-Producing Escherichia coli Sequence Type 167 High-Risk Clone

Systematic Comparison of Nanopore and Illumina Sequencing for the Detection of Plant Viruses and Viroids Using Total RNA Sequencing Approach

Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere

Chromosome-Scale Genome Assembly of Two Australian Nannochloropsis oceanica Isolates Exhibiting Superior Lipid Characteristics

MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution

New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of ssDNA phages infecting marine and terrestrial Alphaproteobacteria

High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes

High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies


A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

A Recurrent Mutation at Position 26340 of SARS-CoV-2 Is Associated with Failure of the E Gene Quantitative Reverse Transcription-PCR Utilized in a Commercial Dual-Target Diagnostic Assay

A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2

Virologic and Immunologic Characterization of COVID-19 Recrudescence after Nirmatrelvir/Ritonavir Treatment

SARS-CoV-2 B.1.1.7 Infection of Syrian Hamster Does Not Cause More Severe Disease, and Naturally Acquired Immunity Confers Protection

Shedding of Viable Virus in Asymptomatic SARS-CoV-2 Carriers

A Novel SARS-CoV-2 Viral Sequence Bioinformatic Pipeline Has Found Genetic Evidence That the Viral 3′ Untranslated Region (UTR) Is Evolving and Generating Increased Viral Diversity

Rapid, sensitive, full genome sequencing of Severe Acute Respiratory Syndrome Virus Coronavirus 2 (SARS-CoV-2)

The G614 pandemic SARS-CoV-2 variant is not more pathogenic than the original D614 form in adult Syrian hamsters

COVID-19 outbreak in Malaysia: Decoding D614G mutation of SARS-CoV-2 virus isolated from an asymptomatic case in Pahang

Quality control of low-frequency variants in SARS-CoV-2 genomes


Sample benchmark files for Hyperledger Caliper https://wiki.hyperledger.org/display/caliper

TradeChain: Decoupling Traceability and Identity in Blockchain enabled Supply Chains

Performance Overhead of Atomic Crosschain Transactions

QiOi: Performance Isolation for Hyperledger Fabric

An International Federal Hyperledger Fabric Verification Framework for Digital COVID-19 Vaccine Passport

Layer 2 Atomic Cross-Blockchain Function Calls

Improving Energy Efficiency of Permissioned Blockchains Using FPGAs

A Journey Towards the Most Efficient State Database for Hyperledger Fabric


CrypTFlow2: Practical 2-Party Secure Inference

CrypTFlow: Secure TensorFlow Inference

SIRNN: A Math Library for Secure RNN Inference

GALA: Greedy ComputAtion for Linear Algebra in Privacy-Preserved Neural Networks

SOTERIA: In Search of Efficient Neural Networks for Private Inference

Secure Medical Image Analysis with CrypTFlow

Multi-Institution Encrypted Medical Imaging AI Validation Without Data Sharing

East: Efficient and Accurate Secure Transformer Framework for Inference


DScribe is a python package for creating machine learning descriptors for atomistic systems.

DScribe: Library of descriptors for machine learning in materials science

Recent advances and applications of deep learning methods in materials science

Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning

Chemical diversity in molecular orbital energy predictions with kernel ridge regression

Efficient hyperparameter tuning for kernel ridge regression with Bayesian optimization

Sensitivity and dimensionality of atomic environment representations used for machine learning interatomic potentials.

Updates to the DScribe Library: New Descriptors and Derivatives


Library for fast text representation and extreme classification.

Enriching Word Vectors with Subword Information

Bag of Tricks for Efficient Text Classification

FastText.zip: Compressing text classification models

AttentionXML: Label Tree-based Attention-Aware Deep Model for High-Performance Extreme Multi-Label Text Classification

A no-regret generalization of hierarchical softmax to extreme multi-label classification

Probabilistic Label Trees for Extreme Multi-label Classification


Louvain Community Detection

Scalable Gromov-Wasserstein Learning for Graph Partitioning and Matching

Tissue-specific extracellular matrix accelerates the formation of neural networks and communities in a neuron-glia co-culture on a multi-electrode array

CDLIB: a python library to extract, compare and evaluate communities from complex networks

3D high-density microelectrode array with optical stimulation and drug delivery for investigating neural circuit dynamics

The mosaic oat genome gives insights into a uniquely healthy cereal crop

Sentiment correlation in financial news networks and associated market movements

Mining Entity Synonyms with Efficient Neural Set Generation

A bibliometric study of research topics, collaboration and centrality in
  the Iterated Prisoner's Dilemma

Meta-validation of bipartite network projections

Anomaly Detection in Networks with Application to Financial Transaction Networks.


Python package for graph neural networks in chemistry and biology

Recent advances and applications of deep learning methods in materials science

Molecular Property Prediction: A Multilevel Quantum Interactions Modeling Perspective

DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Science

Deep Retrosynthetic Reaction Prediction using Local Reactivity and Global Attention

Benchmarking Accuracy and Generalizability of Four Graph Neural Networks Using Large In Vitro ADME Datasets from Different Chemical Spaces

Addressing Over-Smoothing in Graph Neural Networks via Deep Supervision

Zeroth-Order SciML: Non-intrusive Integration of Scientific Software
  with Deep Learning


A toolbox to iNNvestigate neural networks' predictions!

The (Un)reliability of saliency methods

iNNvestigate neural networks!

One Explanation Does Not Fit All: A Toolkit and Taxonomy of AI Explainability Techniques

Explainable artificial intelligence model to predict acute critical illness from electronic health records

Explainable AI Methods - A Brief Overview

DeepCOVIDExplainer: Explainable COVID-19 Diagnosis Based on Chest X-ray Images

On the Privacy Risks of Model Explanations

Interpretability-Driven Sample Selection Using Self Supervised Learning for Disease Classification and Segmentation

Toward Explainable AI for Regression Models

Adaptive neural network classifier for decoding MEG signals


Creative Commons Attribution 4.0 International

Scientific Document Summarization Corpus and Annotations from the WING NUS group.

ScisummNet: A Large Annotated Corpus and Content-Impact Models for Scientific Paper Summarization with Citation Networks

Scientific document summarization via citation contextualization and scientific discourse

International journal on digital libraries

Overview of the CL-SciSumm 2016 Shared Task

The CL-SciSumm Shared Task 2018: Results and Key Insights

Overview and Results: CL-SciSumm Shared Task 2019

Overview and Insights from the Shared Tasks at Scholarly Document Processing 2020: CL-SciSumm, LaySumm and LongSumm

Empirical Methods in Natural Language Processing

IITP-AI-NLP-ML@ CL-SciSumm 2020, CL-LaySumm 2020, LongSumm 2020

IR&TM-NJUST@CLSciSumm 20


PyTorch implementation of the U-Net for image semantic segmentation with high quality images

U-Net: Convolutional Networks for Biomedical Image Segmentation

Mixed Precision Training

Convolutional Neural Networks for Image-Based High-Throughput Plant Phenotyping: A Review

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

Few-Shot Domain Adaptation with Polymorphic Transformers

Noise2Inverse: Self-Supervised Deep Convolutional Denoising for Tomography

Do Neural Optimal Transport Solvers Work? A Continuous Wasserstein-2 Benchmark

Generative Modeling with Optimal Transport Maps

Segmentation of dental cone-beam CT scans affected by metal artifacts using a mixed-scale dense convolutional neural network

Medical physics on CD-ROM/Medical physics

Neural Optimal Transport


adaptive 1d numerical Gauss–Kronrod integration in Julia

Algorithms for the computation of the matrix logarithm based on the double exponential formula

Journal of computational and applied mathematics

Oscillations in a Becker-Döring model with injection and depletion

Modeling High-Frequency Backscattering from a Mesh of Curved Surfaces Using Kirchhoff Approximation

Journal of theoretical and computational acoustics

Learning Continuous Exponential Families Beyond Gaussian

Green's functions of and emission into discrete anisotropic and hyperbolic baths

Lattice Green's Functions for High Order Finite Difference Stencils

Solving optimal control problems with non-smooth solutions using an integrated residual method and flexible mesh

A Duet of Freeze-in and Freeze-out: Lepton-Flavored Dark Matter and Muon
  Colliders


Minkowski Engine is an auto-diff neural network library for high-dimensional sparse tensors

4D Spatio-Temporal ConvNets: Minkowski Convolutional Neural Networks

MinkLoc3D: Point Cloud Based Large-Scale Place Recognition

Generative Sparse Detection Networks for 3D Single-shot Object Detection

DPFM: Deep Partial Functional Maps

High-dimensional Convolutional Networks for Geometric Pattern Recognition

Segment Any Point Cloud Sequences by Distilling Vision Foundation Models

Robo3D: Towards Robust and Reliable 3D Perception against Corruptions

Sparse Tensor-based Point Cloud Attribute Compression

MarS3D: A Plug-and-Play Motion-Aware Model for Semantic Segmentation on Multi-Scan 3D Point Clouds

ConformalLayers: A non-linear sequential neural network with associative layers


Scalable datastore for metrics, events, and real-time analytics

Is your clock-face cozie? A smartwatch methodology for the in-situ collection of occupant comfort data

A Wearable IoT Aldehyde Sensor for Pediatric Asthma Research and
  Management

An Empirical Analysis of UI-based Flaky Tests

Effectively Testing System Configurations of Critical IoT Analytics Pipelines

NagareDB: A Resource-Efficient Document-Oriented Time-Series Database

International Conference on Data Technologies and Applications

Magpie: Automatically Tuning Static Parameters for Distributed File Systems using Deep Reinforcement Learning

AVUBDI: A Versatile Usable Big Data Infrastructure and Its Monitoring Approaches for Process Industry


Splitting Conic Solver

Differentiable Convex Optimization Layers

Learning heat diffusion graphs

Globally Convergent Type-I Anderson Acceleration for Nonsmooth Fixed-Point Iterations

Large-Scale Convex Optimization for Dense Wireless Cooperative Networks

Evaluating the Holevo Cramer-Rao Bound for Multiparameter Quantum Metrology

Chordal decomposition in operator-splitting methods for sparse semidefinite programs

A Survey of Recent Scalability Improvements for Semidefinite Programming with Applications in Machine Learning, Control, and Robotics

Anderson Accelerated Douglas--Rachford Splitting

Fast ADMM for semidefinite programs with chordal sparsity

Learning Convex Optimization Control Policies


Data and tools for generating and inspecting OLMo pre-training data.

Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer

Scaling Language Models: Methods, Analysis & Insights from Training
  Gopher

MEDITRON-70B: Scaling Medical Pretraining for Large Language Models

Dolma: an Open Corpus of Three Trillion Tokens for Language Model
  Pretraining Research

OLMo: Accelerating the Science of Language Models

AboutMe: Using Self-Descriptions in Webpages to Document the Effects of
  English Pretraining Data Filters

Optimizing Distributed Training on Frontier for Large Language Models

A Survey on Data Selection for Language Models

Infini-gram: Scaling Unbounded n-gram Language Models to a Trillion
  Tokens


SO Likelihoods and Theories

Constraining the galaxy-halo connection of infrared-selected unWISE
  galaxies with galaxy clustering and galaxy-CMB lensing power spectra

Cosmology from Cross-Correlation of ACT-DR4 CMB Lensing and DES-Y3 Cosmic Shear

Monthly notices of the Royal Astronomical Society


Open source process design kit for usage with SkyWater Technology Foundry's 130nm node.

Assessment of Reinforcement Learning for Macro Placement

OpenSerDes: An Open Source Process-Portable All-Digital Serial Link

High-Throughput Low Power Area Efficient 17-bit 2's Complement Multilayer Perceptron Components and Architecture for on-Chip Machine Learning in Implantable Devices

Fully Binarized, Parallel, RRAM-Based Computing Primitive for In-Memory Similarity Search

A Machine Learning Approach to Improving Timing Consistency between Global Route and Detailed Route

Enabling Reusable Physical Design Flows with Modular Flow Generators


RobotDART: a versatile robot simulator for robotics and machine learning researchers

Bayesian Optimization with Automatic Prior Selection for Data-Efficient Direct Policy Search

Hierarchical Quality-Diversity for Online Damage Recovery

Proceedings of the Genetic and Evolutionary Computation Conference

Online Damage Recovery for Physical Robots with Hierarchical Quality-Diversity

Robot Design With Neural Networks, MILP Solvers and Active Learning


YMIR, a streamlined model development product.

Deep Active Learning for Computer Vision: Past and Future

YMIR: A Rapid Data-centric Development Platform for Vision Applications

ALBench: A Framework for Evaluating Active Learning in Object Detection


Collection of tools for analyzing open source packages.

Practical Automated Detection of Malicious npm Packages

Proceedings of the 44th International Conference on Software Engineering

Bad Snakes: Understanding and Improving Python Package Index Malware Scanning

On the Feasibility of Cross-Language Detection of Malicious Packages in npm and PyPI

Asia-Pacific Computer Systems Architecture Conference


Simulation framework

An Efficient Algorithm for Power Dominating Set


The General NOAA Operational Modeling Environment

OpenDrift v1.0: a generic framework for trajectory modelling

Revisiting the DeepWater Horizon spill: High resolution model simulations of effects of oil droplet size distribution and river fronts


Bayesian active learning library for research and industrial usecases.

DropConnect is effective in modeling uncertainty of Bayesian deep networks

Active learning with MaskAL reduces annotation effort for training Mask R-CNN on a broccoli dataset with visually similar classes

Computers and electronics in agriculture

Bayesian active learning for production, a systematic study and a reusable library.

Can Active Learning Preemptively Mitigate Fairness Issues?

Stochastic Batch Acquisition: A Simple Baseline for Deep Active Learning

Navya3DSeg -- Navya 3D Semantic Segmentation Dataset & split generation
  for autonomous vehicles

Azimuth: Systematic Error Analysis for Text Classification

LiDAR dataset distillation within bayesian active learning framework:
  Understanding the effect of data augmentation

Domain Adaptation from Scratch

Advancing Deep Active Learning & Data Subset Selection: Unifying
  Principles with Information-Theory Intuitions


Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)

Automating DBSCAN via Deep Reinforcement Learning

How Important are Good Method Names in Neural Code Generation? A Model Robustness Perspective

A Novel Non-population-based Meta-heuristic Optimizer Inspired by the Philosophy of Yi Jing.

Crystal Structure Prediction by Joint Equivariant Diffusion


NLP tools for Turkish.

Embeddings-Based Clustering for Target Specific Stances: The Case of a Polarized Turkey

Data and Representation for Turkish Natural Language Inference

Morphological Word Segmentation on Agglutinative Languages for Neural Machine Translation

Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings

COVID-19 Tweets Classification Based on a Hybrid Word Embedding Method

An Open, Extendible, and Fast Turkish Morphological Analyzer

Recent Advances in Natural Language Processing

Sentimental Analysis of Twitter Users from Turkish Content with Natural Language Processing

Computational intelligence and neuroscience

Preparation of Improved Turkish DataSet for Sentiment Analysis in Social Media

Dual-Source Transformer Model for Neural Machine Translation with Linguistic Knowledge

A Comparison of Different Approaches to Document Representation in Turkish Language

Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi


Hierarchical, iterative clustering for analysis of transcriptomics data in R

A multimodal cell census and atlas of the mammalian primary motor cortex

Morphological diversity of single neurons in molecularly defined cell types

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

Chronic myelomonocytic leukaemia stem cell transcriptomes anticipate disease morphology and outcome


Lisflood OS - LISFLOOD

Independence of Future Changes of River Runoff in Europe from the Pathway to Global Warming


An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

MLP-Mixer: An all-MLP Architecture for Vision

How to train your ViT? Data, Augmentation, and Regularization in Vision
  Transformers

LiT: Zero-Shot Transfer with Locked-image text Tuning

When Vision Transformers Outperform ResNets without Pre-training or
  Strong Data Augmentations

Exploring the Limits of Out-of-Distribution Detection

Transformer for Image Quality Assessment

Surrogate Gap Minimization Improves Sharpness-Aware Training

Spotlight: Mobile UI Understanding using Vision-Language Models with a
  Focus

Emerging trends: A gentle introduction to fine-tuning


Universal Sentence Encoder

Stanza: A Python Natural Language Processing Toolkit for Many Human Languages

Synthetic and Natural Noise Both Break Neural Machine Translation

Robustness Gym: Unifying the NLP Evaluation Landscape

TextFlint: Unified Multilingual Robustness Evaluation Toolkit for Natural Language Processing

Adversarial Augmentation Policy Search for Domain and Cross-Lingual Generalization in Reading Comprehension

Distinguishing Non-natural from Natural Adversarial Samples for More Robust Pre-trained Language Model


A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering

Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics


:round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.

QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function

Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers

Genome-wide studies reveal the essential and opposite roles of ARID1A in controlling human cardiogenesis and neurogenesis from pluripotent stem cells

rigrag: high-resolution mapping of genic targeting preferences during HIV-1 integration in vitro and in vivo

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions

Sex-Specific Relationship between the Cardiorespiratory Fitness and Plasma Metabolite Patterns in Healthy Humans—Results of the KarMeN Study

Genetic Diversity and Pedigree Analysis of Red Currant Germplasm

Reducing MYC's transcriptional footprint unveils a good prognostic gene signature in melanoma

Power of inclusion: Enhancing polygenic prediction with admixed individuals

Transient acetaldehyde production by SO2-producing Saccharomyces cerevisiae promotes the survival of Oenococcus oeni during co-fermentation


GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

A unified catalog of 204,938 reference genomes from the human gut microbiome

New insights from uncultivated genomes of the global human gut microbiome

GTDB-Tk v2: memory friendly classification with the genome taxonomy database

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli

Proceedings of the National Academy of Sciences of the United States of America

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

Large scale genome reconstructions illuminate Wolbachia evolution

Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes


A Python package for working with electrochemical impedance data


Diem’s mission is to build a trusted and innovative financial network that empowers people and businesses around the world.

Understanding (Mis)Behavior on the EOSIO Blockchain

BFT Protocol Forensics

How do programmers use unsafe rust?

Proceedings of the ACM on programming languages

Bottlenecks in Blockchain Consensus Protocols

Memory-Safety Challenge Considered Solved? An In-Depth Study with All Rust CVEs

Block-STM: Scaling Blockchain Execution by Turning Ordering Curse to a
  Performance Blessing

Twins: BFT Systems Made Robust

Strengthened Fault Tolerance in Byzantine Fault Tolerant Replication

On Exploiting Transaction Concurrency To Speed Up Blockchains

Prism Removes Consensus Bottleneck for Smart Contracts


TCGAbiolinks

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

Survival Analysis of Multi-Omics Data Identifies Potential Prognostic Markers of Pancreatic Ductal Adenocarcinoma

Identification of Hub Genes in High-Grade Serous Ovarian Cancer Using Weighted Gene Co-Expression Network Analysis

Medical science monitor : international medical journal of experimental and clinical research

APPBP2 enhances non-small cell lung cancer proliferation and invasiveness through regulating PPM1D and SPOP


TODS: An Automated Time-series Outlier Detection System

Detecting Spacecraft Anomalies Using LSTMs and Nonparametric Dynamic Thresholding

Data-centric Artificial Intelligence: A Survey

TODS: An Automated Time Series Outlier Detection System

TGAN-AD: Transformer-Based GAN for Anomaly Detection of Time Series Data

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry


Development repository for sea-ice column physics


Open weather data for humans.


MagIC is a high-performance code that solves the magneto-hydrodynamics equations in rotating spherical shells

Spherical convective dynamos in the rapidly rotating asymptotic regime

EXPLAINING THE COEXISTENCE OF LARGE-SCALE AND SMALL-SCALE MAGNETIC FIELDS IN FULLY CONVECTIVE STARS

Scaling regimes in spherical shell rotating convection

Approaching a realistic force balance in geodynamo simulations

Effect of shear and magnetic field on the heat-transfer efficiency of convection in rotating spherical shells

Dynamo-based limit to the extent of a stable layer atop Earth’s core

Helicity inversion in spherical convection as a means for equatorward dynamo wave propagation

Monthly Notices of the Royal Astronomical Society

Deep rotating convection generates the polar hexagon on Saturn

Physical conditions for Jupiter-like dynamo models

Multiple zonal jets in a turbulent Jovian dynamo model


汉字转拼音(pypinyin)

DeepSinger: Singing Voice Synthesis with Data Mined From the Web

Which Encoding is the Best for Text Classification in Chinese, English, Japanese and Korean?

Multi-Singer: Fast Multi-Singer Singing Voice Vocoder With A Large-Scale Corpus

MaskGEC: Improving Neural Grammatical Error Correction via Dynamic Masking

THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Rigid Formats Controlled Text Generation

Phonetic-enriched text representation for Chinese sentiment analysis with reinforcement learning

Neural Machine Translation of Logographic Language Using Sub-character Level Information

ProsoSpeech: Enhancing Prosody With Quantized Vector Pre-training in
  Text-to-Speech

Incremental Text-to-Speech Synthesis with Prefix-to-Prefix Framework

BiFSMN: Binary Neural Network for Keyword Spotting


MetaDrive: Open-source driving simulator

MetaDrive: Composing Diverse Driving Scenarios for Generalizable Reinforcement Learning

Learning to Simulate Self-Driven Particles System with Coordinated Policy Optimization

ScenarioNet: Open-Source Platform for Large-Scale Traffic Scenario
  Simulation and Modeling

SafeRL-Kit: Evaluating Efficient Reinforcement Learning Methods for Safe
  Autonomous Driving


american fuzzy lop - a security-oriented fuzzer

Lost at C: A User Study on the Security Implications of Large Language
  Model Code Assistants

WEIZZ: automatic grey-box fuzzing for structured binary formats

International Symposium on Software Testing and Analysis

An Empirical Study of OSS-Fuzz Bugs

Fuzzing Symbolic Expressions

International Conference on Software Engineering

Deep Learning & Software Engineering: State of Research and Future Directions

Sifu - a cybersecurity awareness platform with challenge assessment and intelligent coach

Fuzzing Class Specifications

Path Transitions Tell More:Optimizing Fuzzing Schedules via Runtime
  Program States

Coverage-based Scene Fuzzing for Virtual Autonomous Driving Testing

Growing a Test Corpus with Bonsai Fuzzing


Examples and scripts using Blocks

Blocks and Fuel: Frameworks for deep learning

MED: The LMU System for the SIGMORPHON 2016 Shared Task on Morphological Reinflection

Special Interest Group on Computational Morphology and Phonology Workshop

Single-Model Encoder-Decoder with Explicit Morphological Representation for Reinflection

Neural Morphological Analysis: Encoding-Decoding Canonical Segments

Empirical Methods in Natural Language Processing

Improving Attention Modeling with Implicit Distortion and Fertility for Machine Translation

International Conference on Computational Linguistics

The RWTH Aachen Machine Translation Systems for IWSLT 2017

International Workshop on Spoken Language Translation

A Comparison of Feature-Based and Neural Scansion of Poetry


An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites

Mask-guided Spectral-wise Transformer for Efficient Hyperspectral Image Reconstruction

MST++: Multi-stage Spectral-wise Transformer for Efficient Spectral Reconstruction

Retinexformer: One-stage Retinex-based Transformer for Low-light Image Enhancement


Open source pulsar search and analysis toolkit

A repeating fast radio burst

Fast radio bursts

An extreme magneto-ionic environment associated with the fast radio burst source FRB 121102

CHIME/FRB Detection of Eight New Repeating Fast Radio Burst Sources

A repeating fast radio burst source localized to a nearby spiral galaxy

The Repeating Fast Radio Burst FRB 121102 as Seen on Milliarcsecond Angular Scales

FRB 121102 Bursts Show Complex Time-Frequency Structure

The CHIME Fast Radio Burst Project: System Overview

A bimodal burst energy distribution of a repeating fast radio burst source

A repeating fast radio burst source in a globular cluster


Official repository for design of the quantum programming language Q# and its core libraries

OpenQASM 3: A broader and deeper quantum assembly language

A MLIR Dialect for Quantum Assembly Languages

QFaaS: A Serverless Function-as-a-Service Framework for Quantum
  Computing

Studying chirality imbalance with quantum algorithms

Enabling Retargetable Optimizing Compilers for Quantum Accelerators via
  a Multi-Level Intermediate Representation

QParallel: Explicit Parallelism for Programming Quantum Computers


Automatic architecture search and hyperparameter optimization for PyTorch

Auto-PyTorch Tabular: Multi-Fidelity MetaLearning for Efficient and Robust AutoDL

Towards Automatically-Tuned Deep Neural Networks

The Springer series on challenges in machine learning

Efficient Automated Deep Learning for Time Series Forecasting

Evaluating Generic Auto-ML Tools for Computational Pathology

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry


Quantus is an eXplainable AI toolkit for responsible evaluation of neural network explanations

Quantus: An Explainable AI Toolkit for Responsible Evaluation of Neural
  Network Explanations and Beyond

NoiseGrad: Enhancing Explanations by Introducing Stochasticity to Model
  Weights

Optimizing Explanations by Network Canonization and Hyperparameter Search


COSMIC (Compact Object Synthesis and Monte Carlo Investigation Code)

COSMIC Variance in Binary Population Synthesis

Observational signatures of the black hole mass distribution in the galactic center

Journal of cosmology and astroparticle physics

A Census of Blue Stragglers in Gaia DR2 Open Clusters as a Test of Population Synthesis and Mass Transfer Physics

Detectability of gravitational waves from a population of inspiralling black holes in Milky Way-mass galaxies

Monthly notices of the Royal Astronomical Society

Understanding the progenitor formation galaxies of merging binary black holes


enviroCar Android Application


Atomistic Spin Simulation Framework

Emergence of zero-field non-synthetic single and interchained antiferromagnetic skyrmions in thin films

Magnetic domain walls of the van der Waals material Fe3GeTe2

Micromagnetic description of twisted spin spirals in the B20 chiral magnet FeGe from first principles

The AiiDA-Spirit Plugin for Automated Spin-Dynamics Simulations and Multi-Scale Modeling Based on First-Principles Calculations

Intrinsic antiferromagnetic multimeronic Néel spin-textures in
  ultrathin films

The journal of physical chemistry letters


torch-optimizer -- collection of optimizers for Pytorch

Asteroid: the PyTorch-based audio source separation toolkit for researchers

Recent Theoretical Advances in Non-Convex Optimization

Revisiting RCAN: Improved Training for Image Super-Resolution

AngularGrad: A New Optimization Technique for Angular Convergence of Convolutional Neural Networks

Adversarially Optimized Mixup for Robust Classification

AdaInject: Injection-Based Adaptive Gradient Descent Optimizers for Convolutional Neural Networks

Ground Truth Inference for Weakly Supervised Entity Matching

Non-convex optimization in digital pre-distortion of the signal


Java tools for Address-Event Representation (AER) neuromorphic vision and audio sensor processing

Event-based Vision: A Survey

IEEE transactions on pattern analysis and machine intelligence

Neuromorphic Vision Datasets for Pedestrian Detection, Action Recognition, and Fall Detection

Low Latency Event-Based Filtering and Feature Extraction for Dynamic Vision Sensors in Real-Time FPGA Applications

EDFLOW: Event Driven Optical Flow Camera With Keypoint Detection and Adaptive Block Matching

IEEE transactions on circuits and systems for video technology

Event-Based Gesture Recognition through a Hierarchy of Time-Surfaces for FPGA

Sensor fusion using EMG and vision for hand gesture classification in mobile applications

A Linear Comb Filter for Event Flicker Removal

Falcon Neuro: an event-based sensor on the International Space Station

Heatmap-based Object Detection and Tracking with a Fully Convolutional Neural Network

AEStream: Accelerated event-based processing with coroutines


The Esri Geometry API for Java enables developers to write custom applications for analysis of spatial data.  This API is used in the Esri GIS Tools for Hadoop and other 3rd-party data processing solutions.

Constructing gazetteers from volunteered Big Geo-Data based on Hadoop

A Survey on Spatio-temporal Data Analytics Systems

Geo-L: Topological Link Discovery for Geospatial Linked Data Made Easy

ISPRS international journal of geo-information


OpenTreeMap is a collaborative platform for crowdsourced tree inventory, ecosystem services calculations, urban forestry analysis, and community engagement.


Multilingual text (NLP) processing toolkit

We Value Your Privacy ... Now Take Some Cookies: Measuring the GDPR's Impact on Web Privacy

Proceedings 2019 Network and Distributed System Security Symposium

Dark Patterns at Scale: Findings from a Crawl of 11K Shopping Websites

Proceedings of the ACM on human-computer interaction

Samanantar: The Largest Publicly Available Parallel Corpora Collection for 11 Indic Languages

DaNE: A Named Entity Resource for Danish

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

LOME: Large Ontology Multilingual Extraction

The Effect of Domain and Diacritics in Yoruba–English Neural Machine Translation

Sentiment Analysis by Fusing Text and Location Features of Geo-Tagged Tweets

GTCOM Neural Machine Translation Systems for WMT19

Proceedings of the Fourth Conference on Machine Translation (Volume 2: Shared Task Papers, Day 1)

Huawei's NMT Systems for the WMT 2019 Biomedical Translation Task

Proceedings of the Fourth Conference on Machine Translation (Volume 3: Shared Task Papers, Day 2)

Challenges and Limitations with the Metrics Measuring the Complexity of Code-Mixed Text


A large-scale dataset of both raw MRI measurements and clinical MRI images.

fastMRI: An Open Dataset and Benchmarks for Accelerated MRI

fastMRI: A Publicly Available Raw k-Space and DICOM Dataset of Knee Images for Accelerated MR Image Reconstruction Using Machine Learning.

End-to-End Variational Networks for Accelerated MRI Reconstruction

Results of the 2020 fastMRI Challenge for Machine Learning MR Image Reconstruction

Robust Compressed Sensing MRI with Deep Generative Priors

Score-based diffusion models for accelerated MRI

Advancing machine learning for MR image reconstruction with an open competition: Overview of the 2019 fastMRI challenge

Using Deep Learning to Accelerate Knee MRI at 3 T: Results of an Interchangeability Study

GrappaNet: Combining Parallel Imaging with Deep Learning for Multi-Coil
  MRI Reconstruction

Accelerated MRI with Un-trained Neural Networks


A python binding for crfsuite

Negation Scope Detection for Twitter Sentiment Analysis

Automatically Tagging Constructions of Causation and Their Slot-Fillers

Transactions of the Association for Computational Linguistics

nala: text mining natural language mutation mentions

Toward a Standardized and More Accurate Indonesian Part-of-Speech Tagging

Beyond Query-Oriented Highlighting: Investigating the Effect of Snippet Text Highlighting in Search User Behavior

Computational intelligence and neuroscience

Sentence-Level Resampling for Named Entity Recognition

Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies

CMNEROne at SemEval-2022 Task 11: Code-Mixed Named Entity Recognition by leveraging multilingual data

AI pptX: Robust Continuous Learning for Document Generation with AI Insights.


Repository for suggesting new lineages that should be added to the current scheme

SARS-CoV-2 variants, spike mutations and immune escape

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool

Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas

Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant

Culture and identification of a “Deltamicron” SARS‐CoV‐2 in a three cases cluster in southern France

Convergent Evolution in SARS-CoV-2 Spike Creates a Variant Soup from Which New COVID-19 Waves Emerge

International journal of molecular sciences

SARS-CoV-2 Delta–Omicron Recombinant Viruses, United States

Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

Genome Profiling of SARS-CoV-2 in Indonesia, ASEAN and the Neighbouring East Asian Countries: Features, Challenges and Achievements

Antibody escape and global spread of SARS-CoV-2 lineage A.27


An open source library for face detection in images. The face detection speed can reach 1000FPS.

Feature refinement: An expression-specific feature learning and fusion method for micro-expression recognition

HEU Emotion: a large-scale database for multimodal emotion recognition in the wild

A Survey on Masked Facial Detection Methods and Datasets for Fighting Against COVID-19

IEEE transactions on artificial intelligence

Detect Faces Efficiently: A Survey and Evaluations

IEEE transactions on biometrics, behavior, and identity science

PersonRank: Detecting Important People in Images

YuNet: A Tiny Millisecond-level Face Detector

Objective Class-based Micro-Expression Recognition through Simultaneous Action Unit Detection and Feature Aggregation

Automated assessment of grating acuity in infants and toddlers using an eye-tracking system

RS-Corrector: Correcting the Racial Stereotypes in Latent Diffusion
  Models

MERBench: A Unified Evaluation Benchmark for Multimodal Emotion
  Recognition


Conversion of IPCC documents into semantic form


We are using data science to analyze water quality issues.


Exploiting Symmetry Reduces the Cost of Training QAOA

IEEE transactions on quantum engineering

Importance of Diagonal Gates in Tensor Network Simulations

Constructing Optimal Contraction Trees for Tensor Network Quantum Circuit Simulation

Similarity-based parameter transferability in the quantum approximate optimization algorithm

Stochastic Approach For Simulating Quantum Noise Using Tensor Networks


ECMAScript code generator

Incorporating domain knowledge through task augmentation for front-end JavaScript code generation

Systematic adaptation of dynamically generated source code via domain-specific examples

Visualizing The Intermediate Representation of Just-in-Time Compilers


MIDI / symbolic music tokenizers for Deep Learning models

Music Transformer

Pop Music Transformer: Beat-based Modeling and Generation of Expressive Pop Piano Compositions

This Time with Feeling: Learning Expressive Musical Performance

Compound Word Transformer: Learning to Compose Full-Song Music over Dynamic Directed Hypergraphs

PopMAG: Pop Music Accompaniment Generation

MusicBERT: Symbolic Music Understanding with Large-Scale Pre-Training

MMM : Exploring Conditional Multi-Track Music Generation with the Transformer

FIGARO: Generating Symbolic Music with Fine-Grained Artistic Control

miditok: A Python package for MIDI file tokenization

Byte Pair Encoding for Symbolic Music


Image tracking, Location Based AR, Marker tracking. All on the Web.

Development of career guidance quests using WebAR

An IoT-Enabled Platform for the Assessment of Physical and Mental Activities Utilizing Augmented Reality Exergaming

SAR.IoT: Secured Augmented Reality for IoT Devices Management


Bayesian optimisation & Reinforcement Learning library developped by Huawei Noah's Ark Lab

High-Dimensional Bayesian Optimisation with Variational Autoencoders and Deep Metric Learning.

HEBO Pushing The Limits of Sample-Efficient Hyperparameter Optimisation

Saute RL: Almost Surely Safe Reinforcement Learning Using State
  Augmentation

Toward real-world automated antibody design with combinatorial Bayesian optimization

AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisation

Are we Forgetting about Compositional Optimisers in Bayesian Optimisation?

Tree-Structured Parzen Estimator: Understanding Its Algorithm Components
  and Their Roles for Better Empirical Performance

Model-Based Offline Reinforcement Learning with Pessimism-Modulated
  Dynamics Belief

PFNs4BO: In-Context Learning for Bayesian Optimization

Are Random Decompositions all we need in High Dimensional Bayesian
  Optimisation?


BFT-SMaRt's project home page

Blockchain Consensus Protocols in the Wild

HotStuff: BFT Consensus in the Lens of Blockchain

Basil: Breaking up BFT with ACID (transactions)

Symposium on Operating Systems Principles

Assessing Security and Performances of Consensus algorithms for Permissioned Blockchains.

On Byzantine fault tolerance in multi-master Kubernetes clusters

Evaluation and Ranking of Replica Deployments in Geographic State Machine Replication

Symposium on Reliable Distributed Systems

A Domain Specific Language for Testing Consensus Implementations

Network Bandwidth Variation-Adapted State Transfer for Geo-Replicated
  State Machines and its Application to Dynamic Replica Replacement

Chop Chop: Byzantine Atomic Broadcast to the Network Limit

A State Transfer Method That Adapts to Network Bandwidth Variations in Geographic State Machine Replication


Reservoir computing utilities for scientific machine learning (SciML)

Data-driven prediction of a multi-scale Lorenz 96 chaotic system using deep learning methods: Reservoir computing, ANN, and RNN-LSTM

Reservoir Computing using Cellular Automata

ReservoirComputing.jl: An Efficient and Modular Library for Reservoir
  Computing Models

Measuring chaos in the Lorenz and Rössler models: Fidelity tests for reservoir computing


Fast parallel CTC.

Deep Speech 2: End-to-End Speech Recognition in English and Mandarin

Wav2Letter: an End-to-End ConvNet-based Speech Recognition System

First-Pass Large Vocabulary Continuous Speech Recognition using Bi-Directional Recurrent DNNs

Direct Acoustics-to-Word Models for English Conversational Speech Recognition

FINN-L: Library Extensions and Design Trade-off Analysis for Variable Precision LSTM Networks on FPGAs

What If We Only Use Real Datasets for Scene Text Recognition? Toward Scene Text Recognition With Fewer Labels

Small-footprint Keyword Spotting Using Deep Neural Network and Connectionist Temporal Classifier

LSTM Benchmarks for Deep Learning Frameworks

No Padding Please: Efficient Neural Handwriting Recognition

International Conference on Document Analysis and Recognition

Multilingual Adaptation of RNN Based ASR Systems


A repository of LIVE malwares for your own joy and pleasure. theZoo is a project created to make the possibility of malware analysis open and available to the public.

SAFE: Self-Attentive Function Embeddings for Binary Similarity

A Survey on Ransomware: Evolution, Taxonomy, and Defense Solutions

Explaining Vulnerabilities of Deep Learning to Adversarial Malware Binaries

Ransomware: Recent advances, analysis, challenges and future research directions

Adversarial Attacks against Windows PE Malware Detection: A Survey of
  the State-of-the-Art

EvilModel: Hiding Malware Inside of Neural Network Models

Peeler: Profiling Kernel-Level Events to Detect Ransomware

A Comparative Assessment of Obfuscated Ransomware Detection Methods

Dynamic Feature Dataset for Ransomware Detection Using Machine Learning Algorithms

Ransomware: Analysing the Impact on Windows Active Directory Domain Services


Go implementation of the Ethereum protocol

A Survey on the Security of Blockchain Systems

A Survey on Consensus Mechanisms and Mining Strategy Management in Blockchain Networks

An overview on smart contracts: Challenges, advances and platforms

Decentralization in Bitcoin and Ethereum Networks

A Survey on Ethereum Systems Security: Vulnerabilities, Attacks and
  Defenses

Decentralized Applications: The Blockchain-Empowered Software System

Optimized Execution of Business Processes on Blockchain

Dissecting Ponzi schemes on Ethereum: identification, analysis, and impact

Sereum: Protecting Existing Smart Contracts Against Re-Entrancy Attacks

Online Detection of Effectively Callback Free Objects with Applications to Smart Contracts


Sanity Check: A Strong Alignment and Information Retrieval Baseline for Question Answering

Explainable Multi-hop Verbal Reasoning Through Internal Monologue

North American Chapter of the Association for Computational Linguistics

Parsing as Tagging

Exploring Interpretability in Event Extraction: Multitask Learning of a Neural Event Classifier and an Explanation Decoder

Meeting of the Association for Computational Linguistics

Towards the Necessity for Debiasing Natural Language Inference Datasets

Grounding Gradable Adjectives through Crowdsourcing

PROCEEDINGS OF THE ELEVENTH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2018)

Low Resource Causal Event Detection from Biomedical Literature

Workshop on Biomedical Natural Language Processing

Detecting Diabetes Risk from Social Media Activity

Empirical Methods in Natural Language Processing

An Exploration of Three Lightly-supervised Representation Learning Approaches for Named Entity Classification

International Conference on Computational Linguistics

Scientific Discovery as Link Prediction in Influence and Citation Graphs


DomainBed is a suite to test domain generalization algorithms

Deep Residual Learning for Image Recognition

Domain-Adversarial Training of Neural Networks

Deep Hashing Network for Unsupervised Domain Adaptation

Invariant Risk Minimization

Deeper, Broader and Artier Domain Generalization

Learning to Generalize: Meta-Learning for Domain Generalization

WILDS: A Benchmark of in-the-Wild Distribution Shifts

Distributionally Robust Neural Networks for Group Shifts: On the
  Importance of Regularization for Worst-Case Generalization

Recognition in Terra Incognita

Out-of-Distribution Generalization via Risk Extrapolation (REx)


Oxford Nanopore's Basecaller

Complete Genome Sequence of Anaerostipes hadrus JCM 17467T.


Reliability Test System - Grid Modernization Lab Consortium

U.S. Test System with High Spatial and Temporal Resolution for Renewable Integration Studies

Profitable Emissions-Reducing Energy Storage

An enterprise control methodology for the techno-economic assessment of the energy water nexus

Integrating Electric Vehicles into Power System Operation Production Cost Models

Optimal Transmission Topology for Facilitating the Growth of Renewable Power Generation

Risk-Aware Dimensioning and Procurement of Contingency Reserve

Comparison of Meta-Heuristics for the Planning of Meshed Power Systems

A Coupled Karhunen–Loève and anisotropic sparse grid interpolation method for the probabilistic load flow problem

Distributed Delay-Tolerant Strategies for Equality-Constraint Sum-Preserving Resource Allocation

Power System Impacts of Electric Vehicle Charging Strategies


Go implementation of Ethereum proof of stake

Resource Analysis of Ethereum 2.0 Clients

Ethereum Proof-of-Stake under Scrutiny

Security Review of Ethereum Beacon Clients


Grammars written for ANTLR v4; expectation that the grammars are free of actions.

Superion: Grammar-Aware Greybox Fuzzing

Mapping Language to Code in Programmatic Context

9.6 Million Links in Source Code Comments: Purpose, Evolution, and Decay

Darwinian Data Structure Selection

Code-based Vulnerability Detection in Node.js Applications: How far are we?

Does Python Smell Like Java? Tool Support for Design Defect Discovery in Python

Syntax Error Recovery in Parsing Expression Grammars

HSTREAM: A directive-based language extension for heterogeneous stream
  computing

Nez: practical open grammar language

A Declarative Extension of Parsing Expression Grammars for Recognizing Most Programming Languages


Python tools to access and analyse NuGrid output data (including from MESA)

NuGrid stellar data set – II. Stellar yields from H to Bi for stellar models with MZAMS = 1–25 M⊙ and Z = 0.0001–0.02

Monthly notices of the Royal Astronomical Society

Type Ia supernovae from non-accreting progenitors

Isotopic ratios for C, N, Si, Al, and Ti in C-rich presolar grains from massive stars


Simple simulation code for HERA-like redundant interferometric arrays

Mitigating Internal Instrument Coupling I: Temporal and Spectral Modeling

Improved Constraints on the 21 cm EoR Power Spectrum and the X-Ray Heating of the IGM with HERA Phase I Observations

Absolute Calibration Strategies for the Hydrogen Epoch of Reionization Array and Their Impact on the 21 cm Power Spectrum

Optimizing sparse RFI prediction using deep learning

Patterns of primary beam non-redundancy in close-packed 21 cm array observations

Learning to detect RFI in radio astronomy without seeing it

Zenodo (CERN European Organization for Nuclear Research)

matvis: A matrix-based visibility simulator for fast forward modelling
  of many-element 21 cm arrays


:sparkles: new shiny website built with svelte :heart: for dust and noise measuring project :point_right:  https://sensor.community


The Community Earth System Model

Understanding processes that control dust spatial distributions with global climate models and satellite observations

Assessment of Equilibrium Climate Sensitivity of the Community Earth System Model Version 2 Through Simulation of the Last Glacial Maximum

Differences in the quasi-biennial oscillation response to stratospheric aerosol modification depending on injection strategy and species

Specified dynamics scheme impacts on wave-mean flow dynamics, convection, and tracer transport in CESM2 (WACCM6)

Interannual and Seasonal Drivers of Carbon Cycle Variability Represented by the Community Earth System Model (CESM2)

Dependence of strategic solar climate intervention on background scenario and model physics

Diffuse Radiation Forcing Constraints on Gross Primary Productivity and Global Terrestrial Evapotranspiration

Summer atmospheric circulation over Greenland in response to Arctic amplification and diminished spring snow cover

Future changes in isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) under the shared socioeconomic pathways: the importance of explicit chemistry

How Does Tropospheric VOC Chemistry Affect Climate? An Investigation Using the Community Earth System Model Version 2


Official MOHID Water Modelling System repository

Sensitivity Analysis of the MOHID-Land Hydrological Model: A Case Study of the Ulla River Basin


Simple multirotor simulator with MAVLink protocol support

Design of Software Rejuvenation for CPS Security Using Invariant Sets

Experimental Implementation of an Adaptive Digital Autopilot

A Comprehensive Review of Recent Research Trends on UAVs

Distributed Relative Localization Algorithms for Multi-Robot Networks: A Survey

Devising a Distributed Co-Simulator for a Multi-UAV Network

Autonomous aerial robotics for package delivery: A technical review

Pegasus Simulator: An Isaac Sim Framework for Multiple Aerial Vehicles
  Simulation

Software Rejuvenation for Secure Tracking Control


OpenJij  : Framework for the Ising model and QUBO.

PyQUBO: Python Library for Mapping Combinatorial Optimization Problems to QUBO Form

Mean field analysis of reverse annealing for code-division multiple-access multiuser detection

Programming Quantum Neural Networks on NISQ Systems: An Overview of Technologies and Methodologies


The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

A systematic assessment of current genome-scale metabolic reconstruction tools

Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0.

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species

Systems Biology of Gut Microbiota-Human Receptor Interactions: Toward Anti-inflammatory Probiotics


HIPIFY: Convert CUDA to Portable C++ Code

FZ-GPU: A Fast and High-Ratio Lossy Compressor for Scientific Computing Applications on GPUs

Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing

Lattice QCD GPU Inverters on ROCm Platform

Supporting CUDA for an extended RISC-V GPU architecture

COX: CUDA on X86 by Exposing Warp-Level Functions to CPUs

High-speed turbulent flows towards the exascale: STREAmS-2 porting and
  performance

CuPBoP: CUDA for Parallelized and Broad-range Processors

GPU-accelerated connectome discovery at scale