An open-source MATLAB® ADMM solver for partially decomposable conic optimization programs.

Chordal decomposition in operator-splitting methods for sparse semidefinite programs

Fast ADMM for semidefinite programs with chordal sparsity

Improving Efficiency and Scalability of Sum of Squares Optimization:
  Recent Advances and Limitations

Chordal and factor-width decompositions for scalable semidefinite and polynomial optimization

Fast ADMM for Sum-of-Squares Programs Using Partial Orthogonality

Exploiting Sparsity in the Coefficient Matching Conditions in Sum-of-Squares Programming Using ADMM

Fast ADMM for homogeneous self-dual embedding of sparse SDPs

Scalable analysis of linear networked systems via chordal decomposition

Unfolding Projection-free SDP Relaxation of Binary Graph Classifier via GDPA Linearization.

An Overview and Comparison of Spectral Bundle Methods for Primal and
  Dual Semidefinite Programs


Different semantic models for Amharic

Introducing various Semantic Models for Amharic: Experimentation and Evaluation with multiple Tasks and Datasets

The 5Js in Ethiopia: Amharic Hate Speech Data Annotation Using Toloka Crowdsourcing Platform

EAI International Conference on ICT for Development for Africa

The Effect of Normalization for Bi-directional Amharic-English Neural Machine Translation

Question Answering Classification for Amharic Social Media Community Based Questions

Natural Language Processing in Ethiopian Languages: Current State, Challenges, and Opportunities


Embrapa Wine Grape Instance Segmentation Dataset - Embrapa WGISD

Datasheets for Datasets

Grape detection, segmentation, and tracking using deep neural networks and three-dimensional association

Computers and electronics in agriculture

Parts-per-Object Count in Agricultural Images: Solving Phenotyping Problems via a Single Deep Neural Network

Fusing attention mechanism with Mask R-CNN for instance segmentation of grape cluster in the field

An improved YOLO v4 used for grape detection in unstructured environment


Data-driven reduced order modeling for nonlinear dynamical systems

Data-driven modeling and prediction of non-linearizable dynamics via spectral submanifolds

Data-driven nonlinear model reduction to spectral submanifolds in mechanical systems

Dynamics-based machine learning of transitions in Couette flow

Nonlinear Model Reduction to Fractional and Mixed-Mode Spectral
  Submanifolds

Data-Assisted Non-Intrusive Model Reduction for Forced Nonlinear Finite
  Elements Models


The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

Highly accurate protein structure prediction with AlphaFold

Overview of the CCP4 suite and current developments

Acta crystallographica. Section D, Biological crystallography

UCSF ChimeraX: Structure visualization for researchers, educators, and developers

Protein science : a publication of the Protein Society

Accurate prediction of protein structures and interactions using a three-track neural network

Template-based protein structure modeling using the RaptorX web server

Improved protein structure prediction using predicted interresidue orientations

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

Raptorx: Exploiting structure information for protein alignment by statistical inference

Proteins: Structure, Function, and Bioinformatics

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive


A macOS menu bar application that displays live air quality data from the nearest sensor station.


Comprehensive Process Drift Detection with Visual Analytics

A Survey on Concept Drift in Process Mining

Visual Drift Detection for Event Sequence Data of Business Processes

IEEE transactions on visualization and computer graphics


Imitation learning algorithms

Soft Actor-Critic: Off-Policy Maximum Entropy Deep Reinforcement Learning with a Stochastic Actor

Generative Adversarial Imitation Learning

Soft Actor-Critic Algorithms and Applications

Learning Robust Rewards with Adversarial Inverse Reinforcement Learning

Discriminator-Actor-Critic: Addressing Sample Inefficiency and Reward Bias in Adversarial Imitation Learning

SQIL: Imitation Learning via Reinforcement Learning with Sparse Rewards

Primal Wasserstein Imitation Learning

Disagreement-Regularized Imitation Learning

International Conference on Learning Representations

Random Expert Distillation: Imitation Learning via Expert Policy Support Estimation

What Matters for Adversarial Imitation Learning?


A High Performance Unified Framework for Geostatistics on Manycore Systems.

ExaGeoStat: A High Performance Unified Software for Geostatistics on Manycore Systems

Tile Low-Rank Approximation of Large-Scale Maximum Likelihood Estimation on Manycore Architectures

Geostatistical Modeling and Prediction Using Mixed-Precision Tile Cholesky Factorization

Efficiency assessment of approximated spatial predictions for large datasets

Large-scale Environmental Data Science with ExaGeoStatR


Tools for LOFAR solar data reduction

Imaging of the Quiet Sun in the Frequency Range of 20–80 MHz

Interferometric imaging, and beam-formed study of a moving Type IV Radio
  burst with LOFAR


This is the code associated with the paper A Variational Inequality Perspective for Generative Adversarial Networks.

A Variational Inequality Perspective on Generative Adversarial Networks

Competitive Physics Informed Networks

Adaptive and Universal Algorithms for Variational Inequalities with Optimal Convergence

Modeling Cloud Reflectance Fields using Conditional Generative Adversarial Networks


BP+OSD: Belief propagation with ordered statistics post-processing for decoding quantum LDPC codes

Decoding Across the Quantum LDPC Code Landscape

Bias-tailored quantum LDPC codes

Belief propagation as a partial decoder


A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal

Listeria monocytogenes, Escherichia coli and Coagulase Positive Staphylococci in Cured Raw Milk Cheese from Alentejo Region, Portugal

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

Zenodo (CERN European Organization for Nuclear Research)


DFT optimised crystal structures of inorganic and hybrid halide perovskites

Lattice dynamics and vibrational spectra of the orthorhombic, tetragonal, and cubic phases of methylammonium lead iodide

Physical review. B, Condensed matter and materials physics

What Is Moving in Hybrid Halide Perovskite Solar Cells?

Research Update: Relativistic origin of slow electron-hole recombination in hybrid halide perovskite solar cells

Perspective: Theory and simulation of hybrid halide perovskites

Significance of hydrogen bonding and other noncovalent interactions in determining octahedral tilting in the CH3NH3PbI3 hybrid organic-inorganic halide perovskite solar cell semiconductor

Discovery of Lead‐Free Perovskites for High‐Performance Solar Cells via Machine Learning: Ultrabroadband Absorption, Low Radiative Combination, and Enhanced Thermal Conductivities

Stress Effects on Vibrational Spectra of a Cubic Hybrid Perovskite: A Probe of Local Strain

Comparison of different functionals for density functional theory calculations of defects in metal halide perovskites


Directory of Fortran codes on GitHub, arranged by topic

Simultaneous Discovery, Estimation and Prediction Analysis of Complex Traits Using a Bayesian Mixture Model

The Millennial model: in search of measurable pools and transformations for modeling soil carbon in the new century

A strategy for automated analysis of passive microseismic data to image seismic anisotropy and fracture characteristics

PRIDE PPP-AR: an open-source software for GPS PPP ambiguity resolution

The spatial extent of rainfall events and its relation to precipitation scaling

Efficient Mesh Generation and Deformation for Aerodynamic Shape Optimization

Measuring the Level and Uncertainty of Trend Inflation

Paleo calendar-effect adjustments in time-slice and transient climate-model simulations (PaleoCalAdjust v1.0): impact and strategies for data analysis

Separating the Impact of Individual Land Surface Properties on the Terrestrial Surface Energy Budget in both the Coupled and Uncoupled Land–Atmosphere System

dftatom: A robust and general Schrödinger and Dirac solver for atomic structure calculations


Scalable stochastic verification of continuous-depth models

GoTube: Scalable Stochastic Verification of Continuous-Depth Models

Reachability Analysis of a General Class of Neural Ordinary Differential Equations


EmuFog: Extensible and Scalable Emulation of Large-Scale Fog Computing Infrastructures

All One Needs to Know about Fog Computing and Related Edge Computing Paradigms: A Complete Survey


HiCMA: Hierarchical Computations on Manycore Architectures

Tile Low-Rank Approximation of Large-Scale Maximum Likelihood Estimation on Manycore Architectures

Hierarchical algorithms on hierarchical architectures

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Solving Acoustic Boundary Integral Equations Using High Performance Tile Low-Rank LU Factorization

Efficiency assessment of approximated spatial predictions for large datasets


Pre-trained Transformers for Arabic Language Understanding and Generation (Arabic BERT, Arabic GPT2, Arabic ELECTRA)

AraBERT: Transformer-based Model for Arabic Language Understanding

AraELECTRA: Pre-Training Text Discriminators for Arabic Language Understanding

AraGPT2: Pre-Trained Transformer for Arabic Language Generation

Pre-training Polish Transformer-based Language Models at Scale

BRUMS at SemEval-2020 Task 12 : Transformer based Multilingual Offensive
  Language Identification in Social Media

Improving Arabic Diacritization with Regularized Decoding and Adversarial Training

Meeting of the Association for Computational Linguistics

Combining Context-Free and Contextualized Representations for Arabic Sarcasm Detection and Sentiment Identification

JABER and SABER: Junior and Senior Arabic BERt

A Survey on Arabic Named Entity Recognition: Past, Recent Advances, and Future Trends

Leveraging Knowledge-Based Features With Multilevel Attention Mechanisms for Short Arabic Text Classification


DRAM Bender is the first open source DRAM testing infrastructure that can be used to easily and comprehensively test state-of-the-art DDR4 modules of different form factors. Five prototypes are available on different FPGA boards. Described in our preprint: https://arxiv.org/pdf/2211.05838.pdf

Retrospective: Flipping Bits in Memory Without Accessing Them: An
  Experimental Study of DRAM Disturbance Errors

Retrospective: An Experimental Study of Data Retention Behavior in
  Modern DRAM Devices: Implications for Retention Time Profiling Mechanisms

DRAM Bender: An Extensible and Versatile FPGA-Based Infrastructure to Easily Test State-of-the-Art DRAM Chips

PULSAR: Simultaneous Many-Row Activation for Reliable and
  High-Performance Computing in Off-the-Shelf DRAM Chips

Improving DRAM Performance, Reliability, and Security by Rigorously
  Understanding Intrinsic DRAM Operation


R Package growthrates

Novel Asaia bogorensis Signal Sequences for Plasmodium Inhibition in Anopheles stephensi

TisB Protein Protects Escherichia coli Cells Suffering Massive DNA Damage from Environmental Toxic Compounds

Altered cohesin dynamics and histone H3K9 modifications contribute to mitotic defects in thecbf11Δlipid metabolism mutant

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

An evaluation of fusion partner proteins for paratransgenesis in Asaia bogorensis


Corpus of Open Access articles from multiple fields in Science, Technology, and Medicine.

Open Research Knowledge Graph: Next Generation Infrastructure for Semantic Scholarly Knowledge

Domain-independent Extraction of Scientific Concepts from Research Articles

The STEM-ECR Dataset: Grounding Scientific Entity References in STEM Scholarly Content to Authoritative Encyclopedic and Lexicographic Sources

Coreference Resolution in Research Papers from Multiple Domains

SciEv: Finding Scientific Evidence Papers for Scientific News


Protein Language Model

Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism

Evaluating Protein Transfer Learning with TAPE

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Modeling Protein Using Large-scale Pretrain Language Model


A script that applies the AdaIN style transfer method to arbitrary datasets

Arbitrary Style Transfer in Real-time with Adaptive Instance Normalization

Benchmarking Robustness in Object Detection: Autonomous Driving when Winter is Coming

Deep Digging into the Generalization of Self-Supervised Monocular Depth Estimation

Improving Object Detection in Art Images Using Only Style Transfer

A too-good-to-be-true prior to reduce shortcut reliance

Enhancing the Robustness of Visual Object Tracking via Style Transfer

Computers, materials & continua/Computers, materials & continua (Print)

RoboDepth: Robust Out-of-Distribution Depth Estimation under Corruptions


The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data

Endosymbiont interference and microbial diversity of the Pacific coast tick, Dermacentor occidentalis, in San Diego County, California

The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse

The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patients

Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition

Influence of Colostrum and Vitamins A, D3, and E on Early Intestinal Colonization of Neonatal Holstein Calves Infected with Mycobacterium avium subsp. paratuberculosis

Galacto-oligosaccharides fed during gestation increase Rotavirus A specific antibodies in sow colostrum, modulate the microbiome, and reduce infectivity in neonatal piglets in a commercial farm setting

Assessing the validity of fecal sampling for characterizing variation in threespine stickleback’s gut microbiota


Unicoder model for understanding and generation.

XGLUE: A New Benchmark Dataset for Cross-lingual Pre-training, Understanding and Generation

XLM-K: Improving Cross-Lingual Language Model Pre-training with Multilingual Knowledge

Machine-Created Universal Language for Cross-lingual Transfer


A toolbox for solving phase factors in Quantum signal processing.

Quantum singular value transformation and beyond: exponential improvements for quantum matrix arithmetics

Efficient phase-factor evaluation in quantum signal processing

Ground-State Preparation and Energy Estimation on Early Fault-Tolerant Quantum Computers via Quantum Eigenvalue Transformation of Unitary Matrices

Lecture Notes on Quantum Algorithms for Scientific Computation

Time-marching based quantum solvers for time-dependent linear differential equations

Random circuit block-encoded matrix and a proposal of quantum LINPACK benchmark

Quantum algorithms from fluctuation theorems: Thermal-state preparation

Quantum signal processing for simulating cold plasma waves

Nearly-optimal state preparation for quantum simulations of lattice
  gauge theories

Robust iterative method for symmetric quantum signal processing in all
  parameter regimes


Tutorials and implementations for "Self-normalizing networks"

Self-Normalizing Neural Networks

The Traveling Observer Model: Multi-task Learning Through Spatial Variable Embeddings

Learning Sparse Deep Feedforward Networks via Tree Skeleton Expansion

Robust Implicit Backpropagation


MS MARCO(Microsoft Machine Reading Comprehension) is a large scale dataset focused on machine reading comprehension and question answering

MS MARCO: A Human Generated MAchine Reading COmprehension Dataset

Conversations with Search Engines: SERP-based Conversational Response Generation

Are Neural Ranking Models Robust?

Multi-span Style Extraction for Generative Reading Comprehension


An extensive evaluation and comparison of 28 state-of-the-art superpixel algorithms on 5 datasets.

Superpixels: An evaluation of the state-of-the-art

SEEDS: Superpixels Extracted via Energy-Driven Sampling

Superpixel segmentations for thin sections: Evaluation of methods to enable the generation of machine learning training data sets

Saliency-guided Adaptive Seeding for Supervoxel Segmentation

Rooted Spanning Superpixels

International journal of computer vision

CONIC: Contour Optimized Non-Iterative Clustering Superpixel Segmentation

An Efficient Hybrid Linear Clustering Superpixel Decomposition Framework for Traffic Scene Semantic Segmentation

Bilateral K-Means for Superpixel Computation (the SLIC Method)


Simple Black-box Adversarial Attacks

Random Noise Defense Against Query-Based Black-Box Attacks


An Inplementation of CRF (Conditional Random Fields) in PyTorch 1.0

Improving Zero-Shot Cross-lingual Transfer Between Closely Related Languages by Injecting Character-Level Noise

Pre-trained Language Models for Keyphrase Generation: A Thorough
  Empirical Study


NOW - Numerical Optimization of gradient Waveforms

Tensor-valued diffusion MRI in under 3 minutes: An initial survey of
  microscopic anisotropy and tissue heterogeneity in intracranial tumors

Linear, planar and spherical tensor-valued diffusion MRI data by free waveform encoding in healthy brain, water, oil and liquid crystals

Improved fibre dispersion estimation using b-tensor encoding

Visualizing orientation-specific relaxation-diffusion features mapped onto orientation distribution functions estimated via nonparametric Monte Carlo MRI signal inversion

Cardiac q‐space trajectory imaging by motion‐compensated tensor‐valued diffusion encoding in human heart in vivo


Capacity Expansion Model and Optimiser for the Australian National Energy Market


Simple code to read mangle masks, calculate ids and weights, and generate random points

Updated results on the galaxy–halo connection from satellite kinematics in SDSS

Monthly Notices of the Royal Astronomical Society

The dependence of galaxy clustering on tidal environment in the Sloan Digital Sky Survey

Brightest galaxies as halo centre tracers in SDSS DR7

Maturing satellite kinematics into a competitive probe of the galaxy–halo connection

Full forward model of galaxy clustering statistics with AbacusSummit
  lightcones


N-body fortran integrator

Seven temperate terrestrial planets around the nearby ultracool dwarf star TRAPPIST-1

Planetesimal rings as the cause of the Solar System’s planetary architecture

Dry late accretion inferred from Venus’s coupled atmosphere and internal evolution

On the role of resonances in polluting white dwarfs by asteroids

Water transport throughout the TRAPPIST-1 system: the role of planetesimals

A new photometric and dynamical study of the eclipsing binary star HW Virginis

Monthly notices of the Royal Astronomical Society

Formation of polar circumstellar discs in binary star systems

Formation of the warped debris disc around β Pictoris


Dust maps in the Milky Way

ON GALACTIC DENSITY MODELING IN THE PRESENCE OF DUST EXTINCTION

The K2 Galactic Archaeology Program Data Release 2: Asteroseismic Results from Campaigns 4, 6, and 7

The Astrophysical journal. Supplement series/Astrophysical journal. Supplement series

Weighing the stellar constituents of the galactic halo with APOGEE red giant stars

Faraday tomography of the local interstellar medium with LOFAR: Galactic foregrounds towards IC 342

Old, Metal-poor Extreme Velocity Stars in the Solar Neighborhood

A Gaia DR2 Mock Stellar Catalog

Publications of the Astronomical Society of the Pacific

Stellar chromospheric activity of 1674 FGK stars from the AMBRE-HARPS sample

The Splashback Radius of Planck-SZ clusters

The tale of the tail - disentangling the high transverse velocity stars in Gaia DR2

Predicting the hypervelocity star population in Gaia


GPU-Accelerated Radiative Transfer Code For Exoplanetary Atmospheres

HELIOS: AN OPEN-SOURCE, GPU-ACCELERATED RADIATIVE TRANSFER CODE FOR SELF-CONSISTENT EXOPLANETARY ATMOSPHERES

Self-luminous and Irradiated Exoplanetary Atmospheres Explored with HELIOS

ESPRESSO high-resolution transmission spectroscopy of WASP-76 b

The atmosphere of HD 209458b seen with ESPRESSO

Non-local thermodynamic equilibrium effects determine the upper atmospheric temperature structure of the ultra-hot Jupiter KELT-9b

Analyzing Atmospheric Temperature Profiles and Spectra of M Dwarf Rocky Planets

K2 and Spitzer phase curves of the rocky ultra-short-period planet K2-141 b hint at a tenuous rock vapor atmosphere

Spi-OPS: Spitzer and CHEOPS confirm the near-polar orbit of MASCARA-1 b and reveal a hint of dayside reflection

Supervised Machine Learning for Intercomparison of Model Grids of Brown Dwarfs: Application to GJ 570D and the Epsilon Indi B Binary System

A broadband thermal emission spectrum of the ultra-hot Jupiter WASP-18b


Trading Gym is an open source project for the development of reinforcement learning algorithms in the context of trading.

Deep Reinforcement Learning with Double Q-learning

Dueling Network Architectures for Deep Reinforcement Learning

A Deep Reinforcement Learning Framework for the Financial Portfolio Management Problem


DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol

DockQ: A Quality Measure for Protein-Protein Docking Models

A gated graph transformer for protein complex structure quality assessment and its performance in CASP15

Improved cluster ranking in protein–protein docking using a regression approach

Computational and structural biotechnology journal

Learning Harmonic Molecular Representations on Riemannian Manifold


Unsupervised Image-to-Image Translation

High-Resolution Image Synthesis and Semantic Manipulation with Conditional GANs

Unsupervised Image-to-Image Translation Networks

Reusing Discriminators for Encoding: Towards Unsupervised Image-to-Image Translation

Neural Style-Preserving Visual Dubbing

International Conference on Computer Graphics and Interactive Techniques

Breaking the Dilemma of Medical Image-to-image Translation

Show, Attend, and Translate: Unsupervised Image Translation With Self-Regularization and Attention

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Adverse Weather Image Translation with Asymmetric and Uncertainty-aware
  GAN

Iconify: Converting Photographs into Icons

Proceedings of the 2020 Joint Workshop on Multimedia Artworks Analysis and Attractiveness Computing in Multimedia

Image-to-Image Translation of Synthetic Samples for Rare Classes


[EMNLP 2022] Unifying and multi-tasking structured knowledge grounding with language models

UnifiedSKG: Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Models

Instruction Tuning for Large Language Models: A Survey

How Does In-Context Learning Help Prompt Tuning?

Structured Case-based Reasoning for Inference-time Adaptation of
  Text-to-SQL parsers

Aligning Language Models with Human Preferences via a Bayesian Approach

Explaining Large Language Model-Based Neural Semantic Parsers (Student Abstract)

Testing the Limits of Unified Sequence to Sequence LLM Pretraining on
  Diverse Table Data Tasks


LectureBank Dataset

What Should I Learn First: Introducing LectureBank for NLP Education and Prerequisite Chain Learning

R-VGAE: Relational-variational Graph Autoencoder for Unsupervised Prerequisite Chain Learning

Heterogeneous Graph Neural Networks for Concept Prerequisite Relation Learning in Educational Data

North American Chapter of the Association for Computational Linguistics


Python-based pulsar search data manipulation package

Detection of the magnetar XTE J1810-197 at 150 and 260 GHz with the NIKA2 kinetic inductance detector camera

kern

Shakespeare and National Identity : A Dictionary

Detecting pulsars with neural networks: a proof of concept

The High Time Resolution Universe Pulsar Survey – XVIII. The reprocessing of the HTRU-S Low Lat survey around the Galactic centre using a Fast Folding Algorithm pipeline for accelerated pulsars

A Search for Pulsars around Sgr A* in the First Event Horizon Telescope Data Set


Technologically Assisted Reviews in Empirical Medicine

Measuring the impact of screening automation on meta-analyses of diagnostic test accuracy

From Protocol to Screening: A Hybrid Learning Approach for Technology-Assisted Systematic Literature Reviews.

PGB: A PubMed Graph Benchmark for Heterogeneous Network Representation Learning


A library for Bayesian neural network layers and uncertainty estimation in Deep Learning extending the core of PyTorch

Weight Uncertainty in Neural Networks

Flipout: Efficient Pseudo-Independent Weight Perturbations on Mini-Batches

Laplace Redux -- Effortless Bayesian Deep Learning

Radial Bayesian Neural Networks: Beyond Discrete Support In Large-Scale Bayesian Deep Learning

Specifying Weight Priors in Bayesian Deep Neural Networks with Empirical Bayes

Do Bayesian Variational Autoencoders Know What They Don't Know?


Unreal environments for reinforcement learning

A Survey on Human-aware Robot Navigation

Coordinate-Aligned Multi-Camera Collaboration for Active Multi-Object
  Tracking


Official Code: Implicit 3D Orientation Learning for 6D Object Detection from RGB Images

Multi-path Learning for Object Pose Estimation Across Domains

Iterative Corresponding Geometry: Fusing Region and Depth for Highly Efficient 3D Tracking of Textureless Objects


A Python library for building atomic neural networks

PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials

Journal of chemical information and modeling

Modelling electrochemical systems with finite field molecular dynamics

Training Algorithm Matters for the Performance of Neural Network Potential

Machine learning inference of molecular dipole moment in liquid water

Machine learning: science and technology


The most simple, flexible, and comprehensive OpenAI Gym trading environment (Approved by OpenAI Gym)

Explainable Reinforcement Learning on Financial Stock Trading using SHAP

VeRLPy: Python Library for Verification of Digital Designs with Reinforcement Learning

Multi-Objective reward generalization: Improving performance of Deep
  Reinforcement Learning for applications in single-asset trading


Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

An efficient genotyper and star-allele caller for pharmacogenomics

Computational pharmacogenotype extraction from clinical next-generation sequencing


BeamformIt acoustic beamforming software

Far-Field Automatic Speech Recognition

Automated evaluation of psychotherapy skills using speech and language technologies

Multi-Channel Automatic Speech Recognition Using Deep Complex Unet


ANYstructure is the ultimate steel structure design tool for plate fields and cylinders. Weight optimization for all structures with machine learning capabilities. Calculations are based on DNV standards and rules.


APPS: Automated Programming Progress Standard (NeurIPS 2021)

Measuring Mathematical Problem Solving With the MATH Dataset

Holistic Evaluation of Language Models

Measuring Coding Challenge Competence With APPS

PanGu-Coder: Program Synthesis with Function-Level Language Modeling

Planning with Large Language Models for Code Generation

Less is More: Summary of Long Instructions is Better for Program Synthesis

Deep Learning Based Code Generation Methods: A Literature Review

Deep Learning for Code Intelligence: Survey, Benchmark and Toolkit


MS MARCO(Microsoft Machine Reading Comprehension) is a large scale dataset focused on machine reading comprehension, question answering, and passage ranking. A variant of this task will be the part of TREC and AFIRM 2019. For Updates about TREC 2019 please follow This Repository  Passage Reranking task Task Given a query q and a the 1000 most relevant passages P = p1, p2, p3,... p1000, as retrieved by BM25 a succeful system is expected to rerank the most relevant passage as high as possible. For this task not all 1000 relevant items have a human labeled relevant passage. Evaluation will be done using MRR

MS MARCO: A Human Generated MAchine Reading COmprehension Dataset

SPLADE: Sparse Lexical and Expansion Model for First Stage Ranking

SPLADE v2: Sparse Lexical and Expansion Model for Information Retrieval

Interpretable & Time-Budget-Constrained Contextualization for Re-Ranking

Fast Passage Re-ranking with Contextualized Exact Term Matching and Efficient Passage Expansion

Neural Passage Retrieval with Improved Negative Contrast

A Unified Pretraining Framework for Passage Ranking and Expansion

THIRTY-FIFTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THIRTY-THIRD CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE AND THE ELEVENTH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Universal Vision-Language Dense Retrieval: Learning A Unified
  Representation Space for Multi-Modal Retrieval

Ultra-High Dimensional Sparse Representations with Binarization for Efficient Text Retrieval

Lightweight Composite Re-Ranking for Efficient Keyword Search with BERT


Collection of scripts to aggregate image data for the purposes of training an NSFW Image Classifier

Demystifying the Transferability of Adversarial Attacks in Computer Networks

A convolutional neural network framework for classifying inappropriate online video contents

IAES International Journal of Artificial Intelligence (IJ-AI)

Learning Strategies for Sensitive Content Detection

TWIGMA: A dataset of AI-Generated Images with Metadata From Twitter


MedDialog: Two Large-scale Medical Dialogue Datasets

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

DISC-MedLLM: Bridging General Large Language Models and Real-World
  Medical Consultation

More but Correct: Generating Diversified and Entity-revised Medical Response

Medical Question Summarization with Entity-driven Contrastive Learning

Large Language Models Need Holistically Thought in Medical
  Conversational QA


CLuster And RepAir tool for introductory programming assignments

Automated clustering and program repair for introductory programming assignments

Search, align, and repair: data-driven feedback generation for introductory programming exercises

Verifix: Verified Repair of Programming Assignments


software to detect doublets

Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning

Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review

基因组蛋白质组与生物信息学报

Protocol for Executing and Benchmarking Eight Computational Doublet-Detection Methods in Single-Cell RNA Sequencing Data Analysis

Solo: doublet identification via semi-supervised deep learning

Vaeda computationally annotates doublets in single-cell RNA sequencing data


A collection of offline reinforcement learning algorithms.

MOPO: Model-based Offline Policy Optimization

COMBO: Conservative Offline Model-Based Policy Optimization

CLARE: Conservative Model-Based Reward Learning for Offline Inverse
  Reinforcement Learning

Efficient Offline Policy Optimization with a Learned Model

State Regularized Policy Optimization on Data with Dynamics Shift


cDNA read preprocessing

A high-quality reference genome for the fission yeastSchizosaccharomyces osmophilus

The gap-free genome of mulberry elucidates the architecture and evolution of polycentric chromosomes

Improved Nanopore full-length cDNA sequencing by PCR-suppression

Uncovering bacterial hosts of class 1 integrons in an urban coastal aquatic environment with a single-cell fusion-polymerase chain reaction technology

Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics


Multi-Omics Factor Analysis

Multi-Omics factor analysis disentangles heterogeneity in blood cancer

State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing

Machine learning for multi-omics data integration in cancer

Unsupervised Multi-Omics Data Integration Methods: A Comprehensive Review

Computational Analysis of Phosphoproteomics Data in Multi-Omics Cancer Studies

Applications of Omics Technology for Livestock Selection and Improvement


A python package for benchmarking interpretability techniques on Transformers.

Deep Inside Convolutional Networks: Visualising Image Classification Models and Saliency Maps

Towards Hierarchical Importance Attribution: Explaining Compositional Semantics for Neural Sequence Models

Discretized Integrated Gradients for Explaining Language Models

ferret: a Framework for Benchmarking Explainers on Transformers


MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates

Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases

The MAGMA pipeline for comprehensive genomic analyses of clinicalMycobacterium tuberculosissamples

Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences

International journal of molecular sciences

Tuberculosis Variant with Rifampin Resistance Undetectable by Xpert MTB/RIF, Botswana


Code for Concrete Dropout as presented in https://arxiv.org/abs/1705.07832

Concrete Dropout

Sparse MoE as the New Dropout: Scaling Dense and Self-Slimmable
  Transformers

Deep Learning in Wide-field Surveys: Fast Analysis of Strong Lenses in Ground-based Cosmic Experiments


Modular Multi-scale Integrated Genome Graph Browser

GENCODE: The reference human genome annotation for The ENCODE Project

Resolving the complexity of the human genome using single-molecule sequencing

Superbubbles, Ultrabubbles and Cacti

pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data

Sequence variation aware genome references and read mapping with the variation graph toolkit

MoMI-G: modular multi-scale integrated genome graph browser


The data skeleton from Joint 2D-3D-Semantic Data for Indoor Scene Understanding

Learning Multi-View Aggregation In the Wild for Large-Scale 3D Semantic Segmentation

Geometrical Segmentation of Multi-Shape Point Clouds Based on Adaptive Shape Prediction and Hybrid Voting RANSAC

3D objects and scenes classification, recognition, segmentation, and
  reconstruction using 3D point cloud data: A review


Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Secrets of the Hospital Underbelly: Patterns of Abundance of Antimicrobial Resistance Genes in Hospital Wastewater Vary by Specific Antimicrobial and Bacterial Family

Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome

A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae

Cold Acclimation in Brachypodium Is Accompanied by Changes in Above-Ground Bacterial and Fungal Communities

Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species

Characterization of Boxwood Shoot Bacterial Communities and Potential Impact from Fungicide Treatments

An in vitro model for studies of attenuation of antibiotic-inhibited growth of Aggregatibacter actinomycetemcomitans Y4 by polyamines.

Engineering an incubation environment that mimics in situ conditions for in vitro coastal microbiome studies.


WordNet-LMF formats

Open Dutch WordNet

Some Issues with Building a Multilingual Wordnet

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

Building the Cantonese Wordnet

Pinchah Kristang: A Dictionary of Kristang

Abui Wordnet: Using a Toolbox Dictionary to develop a wordnet for a low-resource language

Building the Old Javanese Wordnet

The Making of Coptic Wordnet


Generate synthetic data that simulate a given dataset.

DataSynthesizer: Privacy-Preserving Synthetic Datasets

Statistical and Scientific Database Management

On the Utility of Synthetic Data: An Empirical Evaluation on Machine Learning Tasks

Robin Hood and Matthew Effects: Differential Privacy Has Disparate
  Impact on Synthetic Data

Comparative Study of Differentially Private Synthetic Data Algorithms from the NIST PSCR Differential Privacy Synthetic Data Challenge

The journal of privacy and confidentiality

Introducing the Monitoring Equipment Mask Environment

Differentially private data release via statistical election to partition sequentially

Mitigating Statistical Bias within Differentially Private Synthetic Data

A Latent Class Modeling Approach for Generating Synthetic Data and
  Making Posterior Inferences from Differentially Private Counts

On the Utility Recovery Incapability of Neural Net-based Differential
  Private Tabular Training Data Synthesizer under Privacy Deregulation


A Python toolbox/library for reality-centric machine/deep learning and data mining on partially-observed time series with PyTorch, including SOTA neural network models for science tasks of imputation, classification, clustering, forecasting & anomaly detection on incomplete (irregularly-sampled) multivariate time series with NaN missing values/data

Informer: Beyond Efficient Transformer for Long Sequence Time-Series Forecasting

Autoformer: Decomposition Transformers with Auto-Correlation for Long-Term Series Forecasting

FEDformer: Frequency Enhanced Decomposed Transformer for Long-term Series Forecasting

BRITS: Bidirectional Recurrent Imputation for Time Series

Are Transformers Effective for Time Series Forecasting?

A Time Series is Worth 64 Words: Long-term Forecasting with Transformers

CSDI: Conditional Score-based Diffusion Models for Probabilistic Time Series Imputation

Estimating Missing Data in Temporal Data Streams Using Multi-Directional Recurrent Neural Networks

GP-VAE: Deep Probabilistic Time Series Imputation

TimesNet: Temporal 2D-Variation Modeling for General Time Series
  Analysis


Implementation of the Wave-U-Net for audio source separation

Wave-U-Net: A Multi-Scale Neural Network for End-to-End Audio Source Separation

End-to-end music source separation: is it possible in the waveform domain?

End-to-End Sound Source Separation Conditioned On Instrument Labels

UNetGAN: A Robust Speech Enhancement Approach in Time Domain for Extremely Low Signal-to-Noise Ratio Condition

Genre-Conditioned Acoustic Models for Automatic Lyrics Transcription of Polyphonic Music

Source Separation Using Dilated Time-Frequency DenseNet for Music Identification in Broadcast Contents

Integrating Dilated Convolution into DenseLSTM for Audio Source Separation


End-to-end learning of deep visual representations for image retrieval

Fine-tuning CNN Image Retrieval with No Human Annotation

Particular object retrieval with integral max-pooling of CNN activations

End-to-end Learning of Deep Visual Representations for Image Retrieval

Learning with Average Precision: Training Image Retrieval with a Listwise Loss

Robust and Decomposable Average Precision for Image Retrieval

ImPosing: Implicit Pose Encoding for Efficient Visual Localization

IEEE Workshop/Winter Conference on Applications of Computer Vision

TLDR: Twin Learning for Dimensionality Reduction

Evaluating Contrastive Models for Instance-based Image Retrieval

PROCEEDINGS OF THE 2021 INTERNATIONAL CONFERENCE ON MULTIMEDIA RETRIEVAL (ICMR '21)

iQPP: A Benchmark for Image Query Performance Prediction

Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval

Listwise Learning to Rank Based on Approximate Rank Indicators

THIRTY-SIXTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FOURTH CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE / TWELVETH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE


Attributing predictions made by the Inception network using the Integrated Gradients method

Axiomatic Attribution for Deep Networks

Did the Model Understand the Question?

Explainable AI Methods - A Brief Overview

Explaining Vulnerabilities of Deep Learning to Adversarial Malware Binaries

Gradients of Counterfactuals

Attribution in Scale and Space

Understanding Integrated Gradients with SmoothTaylor for Deep Neural Network Attribution

International Conference on Pattern Recognition

Cancer Type Classification in Liquid Biopsies Based on Sparse Mutational Profiles Enabled through Data Augmentation and Integration

Exact and Consistent Interpretation of Piecewise Linear Models Hidden behind APIs: A Closed Form Solution

Towards a Resilient Machine Learning Classifier - a Case Study of Ransomware Detection.


PubLayNet: largest dataset ever for document layout analysis

Image-based table recognition: data, model, and evaluation

Current Status and Performance Analysis of Table Recognition in Document Images With Deep Neural Networks

ICDAR 2021 Competition on Scientific Literature Parsing

Deep learning for table detection and structure recognition: A survey


Ekphrasis is a text processing tool, geared towards text from social networks, such as Twitter or Facebook. Ekphrasis performs tokenization, word normalization, word segmentation (for splitting hashtags) and spell correction,  using word statistics from 2 big corpora (english Wikipedia, twitter - 330mil english tweets).

DataStories at SemEval-2017 Task 4: Deep LSTM with Attention for Message-level and Topic-based Sentiment Analysis

Meeting of the Association for Computational Linguistics

Hate Speech Detection: A Solved Problem? The Challenging Case of Long Tail on Twitter

NTUA-SLP at SemEval-2018 Task 1: Predicting Affective Content in Tweets with Deep Attentive RNNs and Transfer Learning

An Effective BERT-Based Pipeline for Twitter Sentiment Analysis: A Case Study in Italian

NTUA-SLP at SemEval-2018 Task 3: Tracking Ironic Tweets using Ensembles of Word and Character Level Attentive RNNs

Studying Cultural Differences in Emoji Usage across the East and the West

Pay “Attention” to your Context when Classifying Abusive Language

Understanding and Interpreting the Impact of User Context in Hate Speech Detection

Proceedings of the Ninth International Workshop on Natural Language Processing for Social Media

Leveraging Multilingual Transformers for Hate Speech Detection.

Multi-Task Learning with Sentiment, Emotion, and Target Detection to
  Recognize Hate Speech and Offensive Language


An implementation of Conditional Random Fields (CRFs) with Deep Learning Method

Bidirectional LSTM-CRF Models for Sequence Tagging

End-to-end Sequence Labeling via Bi-directional LSTM-CNNs-CRF

Error Analysis for Vietnamese Named Entity Recognition on Deep Neural Network Models.


Extract video features from raw videos using multiple GPUs. We support RAFT flow frames as well as S3D, I3D, R(2+1)D, VGGish, CLIP, ResNet features.

A Better Use of Audio-Visual Cues: Dense Video Captioning with Bi-modal Transformer.

Taming Visually Guided Sound Generation

A MIL Approach for Anomaly Detection in Surveillance Videos from
  Multiple Camera Views


Named Entity Recognition (LSTM + CRF) - Tensorflow

Recurrent Neural Network Grammars

Augmenting a De-identification System for Swedish Clinical Text Using Open Resources and Deep Learning

pioNER: Datasets and Baselines for Armenian Named Entity Recognition

2018 Ivannikov Ispras Open Conference (ISPRAS)

De-identifying Free Text of Japanese Dummy Electronic Health Records

Empirical Methods in Natural Language Processing

Sentence-Level Resampling for Named Entity Recognition

Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies

Persian Causality Corpus (PerCause) and the Causality Detection
  Benchmark


Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2

Evolution and Epidemic Spread of SARS-CoV-2 in Colombia: A Year into the Pandemic

Real-Time Estimation of COVID-19 Infections: Deconvolution and Sensor Fusion

Tracking disease outbreaks from sparse data with Bayesian inference


qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

Computational methods for 16S metabarcoding studies using Nanopore sequencing data

Computational and structural biotechnology journal

Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions

Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread

High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation

MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction


PubLayNet: largest dataset ever for document layout analysis

ICDAR 2021 Competition on Scientific Literature Parsing

SALAD : Source-free Active Label-Agnostic Domain Adaptation for Classification, Segmentation and Detection

Generalizability in Document Layout Analysis for Scientific Article
  Figure & Caption Extraction


mPTP - a tool for single-locus species delimitation

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

What DNA barcodes reveal: microhabitat preference, hunting strategy and dispersal ability drive genetic variation across Iberian spider species

Pragmatic Assignment of Species Groups Based on Primary Species Hypotheses: The Case of a Dominant Component of the Southern Ocean Benthic Fauna


nGraph-HE: Deep learning with Homomorphic Encryption (HE) through Intel nGraph

Homomorphic Encryption for Machine Learning in Medicine and Bioinformatics

CaPC Learning: Confidential and Private Collaborative Learning

Is Homomorphic Encryption-Based Deep Learning Secure Enough?


Pre-trained models for natural language processing: A survey

CTRL: A Conditional Transformer Language Model for Controllable Generation

A Metaverse: Taxonomy, Components, Applications, and Open Challenges

Plug and Play Language Models: A Simple Approach to Controlled Text Generation

Authorship Attribution for Neural Text Generation

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)

TURINGBENCH: A Benchmark Environment for Turing Test in the Age of Neural Text Generation

Learning to Express in Knowledge-Grounded Conversation

Constrained Language Models for Interactive Poem Generation

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION

An Empirical Study on the Bugs Found while Reusing Pre-trained Natural
  Language Processing Models


A machine learning toolkit for log-based anomaly detection [ISSRE'16]

Anomaly Detection using Autoencoders in High Performance Computing Systems

THIRTY-THIRD AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FIRST INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE / NINTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Log-based Anomaly Detection Without Log Parsing

Multi-Scale One-Class Recurrent Neural Networks for Discrete Event Sequence Anomaly Detection

Explainable AI: Using Shapley Value to Explain Complex Anomaly Detection ML-Based Systems

Machine Learning and Artificial Intelligence

A Comprehensive Survey of Logging in Software: From Logging Statements
  Automation to Log Mining and Analysis

Leveraging Log Instructions in Log-based Anomaly Detection

Efficiency of Unsupervised Anomaly Detection Methods on Software Logs


Parallelformers: An Efficient Model Parallelization Toolkit for Deployment

AMMUS : A Survey of Transformer-based Pretrained Models in Natural Language Processing

Few-Shot Bot: Prompt-Based Learning for Dialogue Systems

Comparative Performance Evaluation of Large Language Models for
  Extracting Molecular Interactions and Pathway Knowledge

Automated Extraction of Molecular Interactions and Pathway Knowledge using Large Language Model, Galactica: Opportunities and Challenges

Workshop on Biomedical Natural Language Processing


DEPRECATED: Check out PyKOSMOS!

The Zwicky Transient Facility: System Overview, Performance, and First Results

Publications of the Astronomical Society of the Pacific

A Large Fraction of Hydrogen-rich Supernova Progenitors Experience Elevated Mass Loss Shortly Prior to Explosion

The Young and Nearby Normal Type Ia Supernova 2018gv: UV-optical Observations and the Earliest Spectropolarimetry

Near-infrared and Optical Observations of Type Ic SN 2020oi and Broad-lined Type Ic SN 2020bvc: Carbon Monoxide, Dust, and High-velocity Supernova Ejecta

Early Ultra-Violet observations of type IIn supernovae constrain the asphericity of their circumstellar material

SN 2020bqj: A Type Ibn supernova with a long-lasting peak plateau

Automated SpectroPhotometric Image REDuction (ASPIRED)


Enhanced hierarchical bag-of-word library for C++

ORB-SLAM: A Versatile and Accurate Monocular SLAM System

LIFT-SLAM: a deep-learning feature-based monocular visual SLAM method

Eudoxus: Characterizing and Accelerating Localization in Autonomous Machines.

Lightweight Object-level Topological Semantic Mapping and Long-term
  Global Localization based on Graph Matching

Adding Cues to Binary Feature Descriptors for Visual Place Recognition


The ideal tool for exploring global marine biogeochemical cycles.

GNOM v1.0: an optimized steady-state model of the modern marine neodymium cycle

AIBECS.jl: A tool for exploring global marine biogeochemical cycles.


Home of the Language Ecosystem for Modeling Microservice Architecture (LEMMA)

A Modeling Method for Systematic Architecture Reconstruction of Microservice-Based Software Systems

Lecture notes in business information processing

Graphical and Textual Model-Driven Microservice Development

Towards a UML Profile for Domain-Driven Design of Microservice Architectures

SOFTWARE ENGINEERING AND FORMAL METHODS, SEFM 2017

Applying Model-Driven Engineering to Stimulate the Adoption of DevOps Processes in Small and Medium-Sized Development Organizations

A model-driven workflow for distributed microservice development

SAC '19: PROCEEDINGS OF THE 34TH ACM/SIGAPP SYMPOSIUM ON APPLIED COMPUTING

Microservice Architecture and Model-driven Development: Yet Singles, Soon Married (?)

International Conference on Agile Software Development

Jolie & LEMMA: Model-Driven Engineering and Programming Languages Meet on Microservices

Model-Driven Generation of Microservice Interfaces: From LEMMA Domain Models to Jolie APIs

Exploring the Microservice Development Process in Small and Medium-Sized Organizations

Product Focused Software Process Improvement

Collaborative Model-Driven Software Engineering and Microservice Architecture: A Perfect Match? A Position Paper


Fast BPE

Cross-lingual Language Model Pretraining

CTRL: A Conditional Transformer Language Model for Controllable Generation

SAMSum Corpus: A Human-annotated Dialogue Dataset for Abstractive Summarization

Proceedings of the 2nd Workshop on New Frontiers in Summarization

BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

FlauBERT: Unsupervised Language Model Pre-training for French

Unsupervised Translation of Programming Languages

Transformers without Tears: Improving the Normalization of Self-Attention

Unsupervised Question Answering by Cloze Translation

Meeting of the Association for Computational Linguistics

Large Memory Layers with Product Keys

Low-Resource Corpus Filtering using Multilingual Sentence Embeddings


Scenarios, tutorials and demos for Autonomous Driving

Secure and Efficient Blockchain-Based Knowledge Sharing for Intelligent Connected Vehicles

Adaptive Symmetric Reward Noising for Reinforcement Learning


Repository for the paper "Learning to Reconstruct 3D Human Pose and Shape via Model-fitting in the Loop"

Exemplar Fine-Tuning for 3D Human Model Fitting Towards In-the-Wild 3D Human Pose Estimation

Recent Advances of Monocular 2D and 3D Human Pose Estimation: A Deep Learning Perspective

Leveraging MoCap Data for Human Mesh Recovery

Towards Better Adversarial Synthesis of Human Images from Text


IDS data for CJK Unified Ideographs

Benchmarking Chinese Text Recognition: Datasets, Baselines, and an
  Empirical Study

Few-Shot Font Generation by Learning Fine-Grained Local Styles

Subcharacter Information in Japanese Embeddings: When Is It Worth It?

RELEVANCE OF LINGUISTIC STRUCTURE IN NEURAL ARCHITECTURES FOR NLP

Sub-character Neural Language Modelling in Japanese

Empirical Methods in Natural Language Processing

Chinese Character Decomposition for Neural MT with Multi-Word Expressions

Cifu: a Frequency Lexicon of Hong Kong Cantonese

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

Inference-only sub-character decomposition improves translation of unseen logographic characters

CC-Riddle: A Question Answering Dataset of Chinese Character Riddles


The PyTorch Implementation based on YOLOv4 of the paper: "Complex-YOLO: Real-time 3D Object Detection on Point Clouds"

YOLOv4: Optimal Speed and Accuracy of Object Detection

Distance-IoU Loss: Faster and Better Learning for Bounding Box Regression

Run Your 3D Object Detector on NVIDIA Jetson Platforms:A Benchmark Analysis

Accurate 3D to 2D Object Distance Estimation from the Mapped Point Cloud Data


Painter & SegGPT Series: Vision Foundation Models from BAAI

SegGPT: Segmenting Everything In Context

Images Speak in Images: A Generalist Painter for In-Context Visual Learning

UPOCR: Towards Unified Pixel-Level OCR Interface


A library of JavaScript components to represent biological data

BioJS: an open source standard for biological visualisation – its status in 2014

HeatMapViewer: interactive display of 2D data in biology

KEGGViewer, a BioJS component to visualize KEGG Pathways

FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences

PPI layouts: BioJS components for the display of Protein-Protein Interactions

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers

BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs

wigExplorer, a BioJS component to visualise wig data

biojs: BioJS2 (alpha)

BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints


AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon.   In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma

The landscape of extrachromosomal circular DNA in medulloblastoma

Innovative insights into extrachromosomal circular DNAs in gynecologic tumors and reproduction


Repository for Data Commons platform architecture overview, as well as developer and user documentation


Workflows and interfaces for neuroimaging packages

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

BOLD5000, a public fMRI dataset while viewing 5000 visual images

2015 Brainhack Proceedings

Simultaneous EEG-fMRI during a neurofeedback task, a brain imaging dataset for multimodal data integration

On Distribution Shift in Learning-based Bug Detectors

Simultaneous MRI-EEG during a motor imagery neurofeedback task: an open access brain imaging dataset for multi-modal data integration

From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research

Altered Spontaneous Brain Activity in Subjects With Different Cognitive States of Biologically Defined Alzheimer's Disease: A Surface-Based Functional Brain Imaging Study

External Validation of a Convolutional Neural Network for IDH Mutation Prediction

PyHRF: A Python Library for the Analysis of fMRI Data Based on Local Estimation of the Hemodynamic Response Function

Proceedings of the 16th Python in Science Conference


Lean 3's obsolete mathematical components library: please use mathlib4

The Lean mathematical library

Proceedings of the 9th ACM SIGPLAN International Conference on Certified Programs and Proofs

HyperTree Proof Search for Neural Theorem Proving

Formalizing the Solution to the Cap Set Problem

Formalizing computability theory via partial recursive functions

A Formalization of Dedekind Domains and Class Groups of Global Fields

Simple Type Theory is not too Simple: Grothendieck's Schemes without
  Dependent Types

Use and abuse of instance parameters in the Lean mathematical library

A formal proof of Hensel's lemma over the p-adic integers

PROCEEDINGS OF THE 8TH ACM SIGPLAN INTERNATIONAL CONFERENCE ON CERTIFIED PROGRAMS AND PROOFS (CPP' 19)

Simplifying Casts and Coercions

Algebraically Closed Fields in Isabelle/HOL


Selected configuration interaction wave functions in phaseless auxiliary field quantum Monte Carlo

Fixed- and Partial-Node Approximations in Slater Determinant Space for Molecules


Parallel Search-Based Planning Algorithms

ePA*SE: Edge-based Parallel A* for Slow Evaluations

GePA*SE: Generalized Edge-Based Parallel A* for Slow Evaluations

A-ePA*SE: Anytime Edge-Based Parallel A* for Slow Evaluations


This repository is a sub branch of AI Knowledge Tree, mainly focus on Natural Language Processing.

Pre-trained models for natural language processing: A survey

A Survey of Deep Learning Techniques for Neural Machine Translation

A Survey on Document-level Neural Machine Translation: Methods and Evaluation


Model to evaluate emissions of cars


Official Implementation for "ReStyle: A Residual-Based StyleGAN Encoder via Iterative Refinement" (ICCV 2021) https://arxiv.org/abs/2104.02699

Encoding in Style: a StyleGAN Encoder for Image-to-Image Translation

Designing an Encoder for StyleGAN Image Manipulation

Towards IID representation learning and its application on biomedical
  data

k-SALSA: k-Anonymous Synthetic Averaging of Retinal Images via Local Style Alignment


A python package that allows you to download PADOVA isochrones directly fro m their website

StarHorse: a Bayesian tool for determining stellar masses, ages, distances, and extinctions for field stars

Monthly Notices of the Royal Astronomical Society

From the bulge to the outer disc: StarHorse stellar parameters, distances, and extinctions for stars in APOGEE DR16 and other spectroscopic surveys

A Gaia DR2 Mock Stellar Catalog

StarHorse results for spectroscopic surveys + Gaia DR3: Chrono-chemical
  populations in the solar vicinity, the genuine thick disk, and young-alpha
  rich stars


Reference-free profiling of polyploid genomes

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

Three new genome assemblies of blue mussel lineages: North and South European Mytilus edulis and Mediterranean Mytilus galloprovincialis

Subgenome dominance shapes novel gene evolution in the decaploid pitcher plantNepenthes gracilis

Draft Genome of White-blotched River Stingray Provides Novel Clues for Niche Adaptation and Skeleton Formation


NIMH Macaque Template

A synergistic core for human brain evolution and cognition

A comprehensive macaque fMRI pipeline and hierarchical atlas

Bayesian convolutional neural network based MRI brain extraction on nonhuman primates

Large-scale comparative neuroimaging: Where are we and what do we need?

Cortex; a journal devoted to the study of the nervous system and behavior

Body map proto-organization in newborn macaques

An open resource for nonhuman primate imaging

Systematic cortical thickness and curvature patterns in primates

The representation of time windows in primate auditory cortex


A generic parser and tool package for the BTOR2 format.

Pono: A Flexible and Extensible SMT-Based Model Checker

AVR: Abstractly Verifying Reachability

Tools and Algorithms for Construction and Analysis of Systems

Bridging Hardware and Software Analysis with Btor2C: A Word-Level-Circuit-to-C Translator

Tools and Algorithms for the Construction and Analysis of Systems


ULMFit Language Modeling, Text Feature Extraction and Text Classification in Thai Language. Created as part of pyThaiNLP

Universal Language Model Fine-tuning for Text Classification

Regularizing and Optimizing LSTM Language Models

Breaking the Softmax Bottleneck: A High-Rank RNN Language Model

Word Similarity Datasets for Thai: Construction and Evaluation

A Comparative Study of Pretrained Language Models on Thai Social Text Categorization

Improving the state-of-the-art in Thai semantic similarity using distributional semantics and ontological information


A framework for high-performance domain decomposition methods.

Microwave Tomographic Imaging of Cerebrovascular Accidents by Using High-Performance Computing

Fully Parallel Mesh I/O Using PETSc DMPlex with an Application to Waveform Modeling

Mathematical analysis of robustness of two-level domain decomposition methods with respect to inexact coarse solves

A GenEO Domain Decomposition method for Saddle Point problems

Iterative frequency-domain seismic wave solvers based on multi-level domain-decomposition preconditioners

Asynchronous One-Level and Two-Level Domain Decomposition Solvers

Several Ways to Achieve Robustness When Solving Wave Propagation Problems

Large-scale finite-difference and finite-element frequency-domain
  seismic wave modelling with multi-level domain-decomposition preconditioner


[CVPR 2020 Oral] PyTorch implementation of "Disentangling and Unifying Graph Convolutions for Skeleton-Based Action Recognition"

Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour

Normalizing Flows for Human Pose Anomaly Detection

STMT: A Spatial-Temporal Mesh Transformer for MoCap-Based Action Recognition

Anonymization for Skeleton Action Recognition

InfoGCN++: Learning Representation by Predicting the Future for Online
  Human Skeleton-based Action Recognition


Robust regression toolbox for neuroimaging data

Default mode-visual network hypoconnectivity in an autism subtype with pronounced social visual engagement difficulties

Sex-specific impact of prenatal androgens on social brain default mode subsystems

FMRI Study of Neural Responses to Implicit Infant Emotion in Anorexia Nervosa

Sex-specific impact of prenatal androgens on intrinsic functional connectivity between social brain default mode subsystems


Tool that tries to guess a person's gender based on their name and location

BiasFinder: Metamorphic Test Generation to Uncover Bias for Sentiment Analysis Systems

Read what you need: Controllable Aspect-based Opinion Summarization of Tourist Reviews

PROCEEDINGS OF THE 43RD INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL (SIGIR '20)

On the Dynamics of Local to Global Campaigns for Curbing Gender-based
  Violence

The Gender Gap in Scholarly Self-Promotion on Social Media

Are Code Review Processes Influenced by the Genders of the Participants?

Code reviews in open source projects : how do gender biases affect participation and outcomes?


Gradient boosted models (the old gbm package)

Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

A hierarchical reserving model for reported non-life insurance claims

Prediction of Leaf Wetness Duration Using Geostationary Satellite Observations and Machine Learning Algorithms

Solving Estimating Equations With Copulas

Predicting the Potential Habitat Distribution of Crataegus Pontica C. Koch, Using a Combined Modeling Approach in Lorestan Province

LUC at ComMA-2021 Shared Task: Multilingual Gender Biased and Communal
  Language Identification without using linguistic features


Official repository for the ProteinGym benchmarks

ProGen2: Exploring the Boundaries of Protein Language Models

RITA: a Study on Scaling Up Generative Protein Sequence Models

Multi-level Protein Representation Learning for Blind Mutational Effect
  Prediction


Wishbone is an algorithm to align cells along developmental trajectories with branches

Reversed graph embedding resolves complex single-cell trajectories

Wishbone identifies bifurcating developmental trajectories from single-cell data

BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process

D-EE: Distributed software for visualizing intrinsic structure of large-scale single-cell data


FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Root-Secreted Coumarins and the Microbiota Interact to Improve Iron Nutrition in Arabidopsis

Gut microbiota density influences host physiology and is shaped by host and microbial factors

Diversity, Distribution and Co-occurrence Patterns of Bacterial Communities in a Karst Cave System

Organic Amendments Alleviate Salinity Effects on Soil Microorganisms and Mineralisation Processes in Aerobic and Anaerobic Paddy Rice Soils

Size-Tunable Nanoneedle Arrays for Influencing Stem Cell Morphology, Gene Expression, and Nuclear Membrane Curvature

Dispersal–niche continuum index: a new quantitative metric for assessing the relative importance of dispersal versus niche processes in community assembly

Differences in Biofilm Mass, Expression of Biofilm-Associated Genes, and Resistance to Desiccation between Epidemic and Sporadic Clones of Carbapenem-Resistant Acinetobacter baumannii Sequence Type 191

Changes in the Vaginal Microbiome during the Pregnancy to Postpartum Transition

Reproductive sciences (Thousand Oaks, Calif.)

Recycling pathways in cold-water coral reefs: Use of dissolved organic matter and bacteria by key suspension feeding taxa

Productive wetlands restored for carbon sequestration quickly become net CO2 sinks with site-level factors driving uptake variability


A wide variety of research projects developed by the SpokenNLP team of Speech Lab, Alibaba Group.

BERT for Joint Intent Classification and Slot Filling

MUG: A General Meeting Understanding and Generation Benchmark

Sequence Model with Self-Adaptive Sliding Window for Efficient Spoken Document Segmentation

Improving Long Document Topic Segmentation Models With Enhanced Coherence Modeling


South-East Asia Large Language Models

Typhoon: Thai Large Language Models

BHASA: A Holistic Southeast Asian Linguistic and Cultural Evaluation
  Suite for Large Language Models


A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

Low-pass whole genome bisulfite sequencing of neonatal dried blood spots identifies a role for RUNX1 in Down syndrome DNA methylation profiles

Imprinting effects of UBE3A loss on synaptic gene networks and Wnt signaling pathways


Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning

Recursive evaluation and iterative contraction of N-body equivariant features.

Efficient implementation of atom-density representations


A centralized repository to report scikit-learn model performance across a variety of parameter settings and data sets.

PMLB: A Large Benchmark Suite for Machine Learning Evaluation and
  Comparison

Data-driven Advice for Applying Machine Learning to Bioinformatics Problems

Data-driven advice for interpreting local and global model predictions
  in bioinformatics problems


Code for our paper "Graph Pre-training for AMR Parsing and Generation" in ACL2022

Maximum Bayes Smatch Ensemble Distillation for AMR Parsing

AMPERE: AMR-Aware Prefix for Generation-Based Event Argument Extraction Model

Semantic-based Pre-training for Dialogue Understanding

Scene Graph Parsing via Abstract Meaning Representation in Pre-trained Language Models

Proceedings of the 2nd Workshop on Deep Learning on Graphs for Natural Language Processing (DLG4NLP 2022)

Text Generation Model Enhanced with Semantic Information in Aspect Category Sentiment Analysis

Findings of the Association for Computational Linguistics: ACL 2023


:bug:  Legacy dragonfly plugin for large-scale climate and urban heat island modeling.


Baseline Recipe for VoicePrivacy Challenge 2020: https://www.voiceprivacychallenge.org/vp2020/docs/VoicePrivacy_2020_Eval_Plan_v1_3.pdf

Introducing the VoicePrivacy Initiative

The VoicePrivacy 2020 Challenge Evaluation Plan

The VoicePrivacy 2020 Challenge: Results and findings

Speech Pseudonymisation Assessment Using Voice Similarity Matrices

Preventing Fake Information Generation Against Media Clone Attacks

IEICE transactions on information and systems


IS mapping software

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018

Genome sequence comparisons of serial multi-drug-resistant Mycobacterium tuberculosis isolates over 21 years of infection in a single patient

IS6110 Copy Number in Multi-Host Mycobacterium bovis Strains Circulating in Bovine Tuberculosis Endemic French Regions

ISMapper: Identifying insertion sequences in bacterial genomes from short read sequence data


R package to estimate q-values and false discovery rate quantities.

Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNet

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Combinatorial CRISPR–Cas9 screens for de novo mapping of genetic interactions

Professional Development for Language Teachers

R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations

Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk

Proceedings of the National Academy of Sciences of the United States of America

Exploiting the GTEx resources to decipher the mechanisms at GWAS loci

Proteobacteria explain significant functional variability in the human gut microbiome

p62/SQSTM1-droplet serves as a platform for autophagosome formation and anti-oxidative stress response

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design


suite to deal with passband photometry

The Gaia DR2 parallax zero-point: hierarchical modelling of red clump stars

Monthly notices of the Royal Astronomical Society

Gaia Data Release 3: Apsis II -- Stellar Parameters

HAL (Le Centre pour la Communication Scientifique Directe)

The GALAH survey: multiple stars and our Galaxy

The Tidal Disruption Event AT 2018hyz II: Light Curve Modeling of a
  Partially Disrupted Star

SN 2016iet: The Pulsational or Pair Instability Explosion of a Low-metallicity Massive CO Core Embedded in a Dense Hydrogen-poor Circumstellar Medium

Luminous Supernovae: Unveiling a Population between Superluminous and Normal Core-collapse Supernovae

SQuIGGL⃗E Survey: Massive z∼0.6 Post-Starburst Galaxies Exhibit Flat Age Gradients

A 99-minute Double-lined White Dwarf Binary from SDSS-V

A catalogue of cataclysmic variables from 20 years of the Sloan Digital
  Sky Survey with new classifications, periods, trends and oddities

OH Megamasers in H i Surveys: Forecasts and a Machine-learning Approach to Separating Disks from Mergers


Hyperbolic Embeddings

Representation Tradeoffs for Hyperbolic Embeddings

HoroPCA: Hyperbolic Dimensionality Reduction via Horospherical Projections

Hyperbolic disc embedding of functional human brain connectomes using resting state fMRI

Hyperbolic Diffusion Embedding and Distance for Hierarchical
  Representation Learning

Unit Ball Model for Embedding Hierarchical Structures in the Complex Hyperbolic Space


Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Pax6 limits the competence of developing cerebral cortical cells to respond to inductive intercellular signals

Single cell analysis in head and neck cancer reveals potential immune evasion mechanisms during early metastasis

Selective vulnerability of layer 5a corticostriatal neurons in Huntington’s disease

bioRxiv : the preprint server for biology

Single-nucleus chromatin accessibility and RNA sequencing reveal impaired brain development in prenatally e-cigarette exposed neonatal rats


Verifies the linearizability of experimentally accessible histories.

Elle: Inferring Isolation Anomalies from Experimental Observations


A Python library for spectral modelling and RADEX

The Distribution and Origin of C_2H in NGC 253 from ALCHEMI

PROPERTIES OF THE MOLECULAR CORES OF LOW LUMINOSITY OBJECTS


Working directory for dynamics learning for experimental robots.

Deep Reinforcement Learning in a Handful of Trials using Probabilistic Dynamics Models

Neural Network Dynamics for Model-Based Deep Reinforcement Learning with Model-Free Fine-Tuning

PIPPS: Flexible Model-Based Policy Search Robust to the Curse of Chaos


Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation

Combined CRISPRi/a-Based Chemical Genetic Screens Reveal that Rigosertib Is a Microtubule-Destabilizing Agent

Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs

A curative combination therapy for lymphomas achieves high fractional cell killing through low cross-resistance and drug additivity but not synergy

Cellular response to small molecules that selectively stall protein synthesis by the ribosome

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells

FBXL4 ubiquitin ligase deficiency promotes mitophagy by elevating NIX levels

Adaptive exchange sustains cullin–RING ubiquitin ligase networks and proper licensing of DNA replication

Translational fidelity screens in mammalian cells reveal eIF3 and eIF4G2 as regulators of start codon selectivity

GATOR2-dependent mTORC1 activity is a therapeutic vulnerability in FOXO1 fusion–positive rhabdomyosarcoma


ULYSSES: Universal LeptogeneSiS Equation Solver

Primordial black hole evaporation and dark matter production. II. Interplay with the freeze-in or freeze-out mechanism

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)

Rescuing high-scale leptogenesis using primordial black holes

Superradiant production of heavy dark matter from primordial black holes

ULYSSES, universal LeptogeneSiS equation solver: Version 2

Non-thermal WIMPy Baryogenesis with Primordial Black Hole


Package implementing various parametric and nonparametric methods for conditional density estimation

Conditional Density Estimation with Neural Networks: Best Practices and Benchmarks

Noise Regularization for Conditional Density Estimation


AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.

Experimentally validated geometrically exact model for extreme nonlinear motions of cantilevers

Methods of continuation and their implementation in the COCO software platform with application to delay differential equations

Nonlinear damping in micromachined bridge resonators

Travelling waves in a PDE-ODE coupled system with nonlinear diffusion

Modeling of dual frequency combs and bistable solitons in third-harmonic generation


XDSME: XDS Made Easier

KAMO: towards automated data processing for microcrystals

Acta crystallographica. Section D, Structural biology

Design of protein-binding proteins from the target structure alone

Protein X-ray Crystallography and Drug Discovery

MXCuBE2: the dawn of MXCuBE Collaboration

X-ray data processing

Comparison of helical scan and standard rotation methods in single-crystal X-ray data collection strategies

A Ca2+-regulated deAMPylation switch in human and bacterial FIC proteins

Study of the DnaB:DciA interplay reveals insights into the primary mode of loading of the bacterial replicative helicase

PROXIMA-1 beamline for macromolecular crystallography measurements at Synchrotron SOLEIL

High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii—An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle

International journal of molecular sciences


Computer vision utils for Blender (generate instance annoatation, depth and 6D pose by one line code)

Training Deep Networks with Synthetic Data: Bridging the Reality Gap by Domain Randomization

iShape: A First Step Towards Irregular Shape Instance Segmentation

Bent & Broken Bicycles: Leveraging synthetic data for damaged object re-identification

IEEE Workshop/Winter Conference on Applications of Computer Vision


A simulation tool to explore the spread of COVID-19 and the impact of prevention measures in small communities such as nursing homes, schools or universities via agent-based modeling (ABM).

Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine

The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application

Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study

Safety and efficacy of the ChAdOx1 nCoV-19 vaccine (AZD1222) against SARS-CoV-2: an interim analysis of four randomised controlled trials in Brazil, South Africa, and the UK

Temporal dynamics in viral shedding and transmissibility of COVID-19

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing

Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data

Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20–28 January 2020

Epidemiology of Covid-19 in a Long-Term Care Facility in King County, Washington


Trust Region Policy Optimization with TensorFlow and OpenAI Gym

Trust Region Policy Optimization

Emergence of Locomotion Behaviours in Rich Environments

Autonomous Six-Degree-of-Freedom Spacecraft Docking Maneuvers via Reinforcement Learning.

Intelligent Trainer for Model-Based Reinforcement Learning

Foresee then Evaluate: Decomposing Value Estimation with Latent Future Prediction


Workflow Description Language (WDL) scripts for common vg workflows

Benchmarking challenging small variants with linked and long reads

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

A complete pedigree-based graph workflow for rare candidate variant analysis


A set of tools for processing of spatial and temporal disaggregations.


Creative Commons Attribution 4.0 International

Chemical Methods Ontology

NFDI4Chem - Towards a National Research Data Infrastructure for Chemistry in Germany

Establishing a Common Nutritional Vocabulary - From Food Production to Diet

Overview of chemical ontologies

Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry

Structuring superconductor data with ontology: reproducing historical datasets as knowledge bases

Science and technology of advanced materials. Methods


Go implementation of Leabra algorithm for biologically-based models of cognition, based on emergent framework (with Python interface)

Deep Predictive Learning in Neocortex and Pulvinar

Correcting the hebbian mistake: Toward a fully error-driven hippocampus


Source code for EPA’s annual air trends report on air quality, emissions and visibility trends.


Species occurrence data toolkit for R


R interface to the National Hydrography Dataset :droplet:


Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.

Variable-Order de Bruijn Graphs

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

Building large updatable colored de Bruijn graphs via merging

Succinct k-mer Sets Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform *

Simulating the DNA String Graph in Succinct Space


Compare GAN code.

Are GANs Created Equal? A Large-Scale Study

Differentiable Augmentation for Data-Efficient GAN Training

Self-Supervised GANs via Auxiliary Rotation Loss

A Large-scale Study of Representation Learning with the Visual Task Adaptation Benchmark

Consistency Regularization for Generative Adversarial Networks

A Large-Scale Study on Regularization and Normalization in GANs

High-Fidelity Image Generation With Fewer Labels

The GAN Landscape: Losses, Architectures, Regularization, and Normalization

Regularizing Generative Adversarial Networks under Limited Data

GS-WGAN: A Gradient-Sanitized Approach for Learning Differentially Private Generators


ADAHESSIAN: An Adaptive Second Order Optimizer for Machine Learning

Doubly Adaptive Scaled Algorithm for Machine Learning Using Second-Order Information


pyOSOAA is a python interface for the Ocean Successive Orders with Atmosphere - Advanced (OSOAA) radiative transfer.


Recurrent Event Network: Autoregressive Structure Inference over Temporal Knowledge Graphs (EMNLP 2020)

Modeling Relational Data with Graph Convolutional Networks

Convolutional 2D Knowledge Graph Embeddings

Know-Evolve: Deep Temporal Reasoning for Dynamic Knowledge Graphs

Representation Learning for Dynamic Graphs: A Survey

Temporal Knowledge Graph Forecasting with Neural ODE

TimeTraveler: Reinforcement Learning for Temporal Knowledge Graph Forecasting

Graph Hawkes Neural Network for Forecasting on Temporal Knowledge Graphs

Recurrent Event Network for Reasoning over Temporal Knowledge Graphs.

On the Ambiguity of Rank-Based Evaluation of Entity Alignment or Link Prediction Methods


Material del curso de Sistemas Recomendadores IIC3633 PUC Chile

BERT4Rec: Sequential Recommendation with Bidirectional Encoder Representations from Transformer

Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches

RECSYS 2019: 13TH ACM CONFERENCE ON RECOMMENDER SYSTEMS

Recommending what video to watch next: a multitask ranking system

Controlling Fairness and Bias in Dynamic Learning-to-Rank

Fairness-Aware Explainable Recommendation over Knowledge Graphs

Self-Supervised Reinforcement Learning for Recommender Systems

Personalized Re-ranking for Recommendation

Explanation Mining: Post Hoc Interpretability of Latent Factor Models for Recommendation Systems

Interactive Recommender System via Knowledge Graph-enhanced Reinforcement Learning

Neural Interactive Collaborative Filtering


Access and analyze historical weather and climate data with Python.

Explainable Multi-Agent Recommendation System for Energy-Efficient
  Decision Support in Smart Homes


Platform for designing and evaluating Graph Neural Networks (GNN)

Design Space for Graph Neural Networks

ROLAND: Graph Learning Framework for Dynamic Graphs

Relational Multi-Task Learning: Modeling Relations between Data and
  Tasks

DFG-NAS: Deep and Flexible Graph Neural Architecture Search

Optimal Inference in Contextual Stochastic Block Models


A power station dictionary that enables mapping between various naming conventions and associated plant metadata


Automated de novo assembly of whole chloroplast genomes.

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

Chloroplot: An Online Program for the Versatile Plotting of Organelle Genomes

Practical considerations for plant phylogenomics

Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l

Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)

A systematic comparison of chloroplast genome assembly tools

Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum

Molecular phylogenomics of the tribe Shoreeae (Dipterocarpaceae) using whole plastid genomes

Plastome Rearrangements in the “Adenocalymma-Neojobertia” Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications


Torch-7 for Android

AI Benchmark: Running Deep Neural Networks on Android Smartphones

CNNdroid: GPU-Accelerated Execution of Trained Deep Convolutional Neural Networks on Android

DEEProtect: Enabling Inference-based Access Control on Mobile Sensing Applications

An Orchestrated Empirical Study on Deep Learning Frameworks and Platforms


An automated RNA-seq pipeline using Nextflow

Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype

Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders

Human IgA-Expressing Bone Marrow Plasma Cells Characteristically Upregulate Programmed Cell Death Protein-1 Upon B Cell Receptor Stimulation

bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage

The histone code reader PHD finger protein 7 controls sex-linked disparities in gene expression and malignancy in Drosophila

Prolactin-sensitive olfactory sensory neurons regulate male preference in female mice by modulating responses to chemosensory cues


R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

A single-cell atlas of the human healthy airways

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche

Aging-related olfactory loss is associated with olfactory stem cell transcriptional alterations in humans

The Journal of clinical investigation/The journal of clinical investigation

Combined lineage tracing and scRNA-seq reveals unexpected first heart field predominance of human iPSC differentiation

Selective vulnerability of layer 5a corticostriatal neurons in Huntington’s disease

Single-Nuclei RNA-Sequencing of the Gastrocnemius Muscle in Peripheral Artery Disease

Drugs of abuse hijack a mesolimbic pathway that processes homeostatic need


Deep count autoencoder for denoising scRNA-seq data

False signals induced by single-cell imputation

A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data

Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen

A universal deep neural network for in-depth cleaning of single-cell RNA-Seq data

IDEAS: individual level differential expression analysis for single-cell RNA-seq data

Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review

基因组蛋白质组与生物信息学报

SCDRHA: A scRNA-Seq Data Dimensionality Reduction Algorithm Based on Hierarchical Autoencoder

Imputation Methods for scRNA Sequencing Data

Bayesian Non-linear Latent Variable Modeling via Random Fourier Features


Transit Least Squares: An optimized transit-fitting algorithm to search for periodic transits of small planets

Optimized transit detection algorithm to search for periodic transits of small planets

A PSF-based Approach to TESS High quality data Of Stellar clusters (PATHOS) -- II. Search for exoplanets in open clusters of the southern ecliptic hemisphere and their frequency

Monthly Notices of the Royal Astronomical Society

Transit least-squares survey: I. Discovery and validation of an Earth-sized planet in the four-planet system K2-32 near the 1:2:5:7 resonance

Discovery of a hot, transiting, Earth-sized planet and a second temperate, non-transiting planet around the M4 dwarf GJ 3473 (TOI-488)

Decoding the radial velocity variations of HD 41248 with ESPRESSO

TOI-1201 b: A mini-Neptune transiting a bright and moderately young M dwarf

A PSF-based Approach to TESS High quality data Of Stellar clusters (PATHOS) - III. Exploring the properties of young associations through their variables, dippers, and candidate exoplanets

A PSF-based Approach to TESS High quality data Of Stellar clusters (PATHOS) – IV. Candidate exoplanets around stars in open clusters: frequency and age–planetary radius distribution

Transit least-squares survey

The CARMENES search for exoplanets around M dwarfs


A text generation benchmarking platform

Texygen: A Benchmarking Platform for Text Generation Models

PlotMachines: Outline-Conditioned Generation with Dynamic Plot State Tracking

Text Data Augmentation Made Simple By Leveraging NLP Cloud APIs

Jointly Measuring Diversity and Quality in Text Generation Models

Towards Controllable and Personalized Review Generation

Latent Code and Text-based Generative Adversarial Networks for Soft-text Generation

DGSAN: Discrete Generative Self-Adversarial Network

Generative Adversarial Nets for Information Retrieval: Fundamentals and Advances

Tailoring Language Generation Models under Total Variation Distance

The Integration of Human Rights in Bilateral and Plurilateral Free Trade Agreements: Arguments for a Coherent Relationship with Reference to the Swiss Context


An R package to flexible rearrange, reshape and aggregate data

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China

Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints

Snapshots of human anatomy, locomotion, and behavior from Late Pleistocene footprints at Engare Sero, Tanzania

Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni

RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus)

A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters

Development and Evaluation of a Commercial Direct-Fed Microbial (Zymospore®) on the Fecal Microbiome and Growth Performance of Broiler Chickens under Experimental Challenge Conditions

Animals : an open access journal from MDPI

An educator's perspective of the tidyverse

eScholarship (California Digital Library)


Tensorflow implementation of Human-Level Control through Deep Reinforcement Learning

Deep Reinforcement Learning: An Overview

Safe Reinforcement Learning via Shielding

Beating Atari with Natural Language Guided Reinforcement Learning

Multi-Objective Deep Q-Learning with Subsumption Architecture

Resetting the Optimizer in Deep RL: An Empirical Study


VGGFace implementation with Keras Framework

FakeSpotter: A Simple yet Robust Baseline for Spotting AI-Synthesized Fake Faces

Face Recognition: Too Bias, or Not Too Bias?

SensitiveLoss: Improving Accuracy and Fairness of Face Representations with Discrimination-Aware Deep Learning

Amora: Black-box Adversarial Morphing Attack

Deep Learning Approach for Screening Autism Spectrum Disorder in Children with Facial Images and Analysis of Ethnoracial Factors in Model Development and Application

Does Face Recognition Accuracy Get Better With Age? Deep Face Matchers Say No

Adversarial Image Translation: Unrestricted Adversarial Examples in Face Recognition Systems

Real-World Adversarial Examples Via Makeup

Fast and Accurate Likelihood Ratio-Based Biometric Verification Secure Against Malicious Adversaries

Incremental cluster validity index-guided online learning for
  performance and robustness to presentation order


PyTorch implementation of "Efficient Neural Architecture Search via Parameters Sharing"

Neural Architecture Search with Reinforcement Learning

Efficient Neural Architecture Search via Parameter Sharing

Neural Optimizer Search with Reinforcement Learning


Usable Implementation of "Bootstrap Your Own Latent" self-supervised learning, from Deepmind, in Pytorch

Fixed-Confidence Guarantees for Bayesian Best-Arm Identification

Understanding self-supervised Learning Dynamics without Contrastive Pairs

BYOL works even without batch statistics

An Empirical Study on Disentanglement of Negative-free Contrastive
  Learning

Similarity of Neural Architectures using Adversarial Attack
  Transferability


Code for "Model-Agnostic Meta-Learning for Fast Adaptation of Deep Networks"

Meta-Learning Probabilistic Inference For Prediction

Unsupervised Learning via Meta-Learning

Adversarial Attack and Defense on Graph Data: A Survey

Few-Shot Learning with Metric-Agnostic Conditional Embeddings

Deep Reinforcement Learning

Meta-Learning Requires Meta-Augmentation

Learning from Few Samples: A Survey

Adversarial Meta-Learning

Task-Robust Model-Agnostic Meta-Learning

AutoGraph: Imperative-style Coding with Graph-based Performance


A drag-and-drop quantum circuit simulator that runs in your browser. A toy for exploring and understanding small quantum circuits.

Open source software in quantum computing

Factoring with n+2 clean qubits and n-1 dirty qubits

Visualizing quantum mechanics in an interactive simulation – Virtual Lab by Quantum Flytrap

"Equation missing" : A Cross-Platform Programming Framework for Quantum-Accelerated Scientific Computing

Secure quantum computing for healthcare sector: A short analysis

VENUS: A Geometrical Representation for Quantum State Visualization

VACSEN: A Visualization Approach for Noise Awareness in Quantum
  Computing

High-performance computing and computational intelligence applications with a multi-chaos perspective

Multi-Chaos, Fractal and Multi-Fractional Artificial Intelligence of Different Complex Systems


A 13B large language model developed by Baichuan Intelligent Technology

Measuring Massive Multitask Language Understanding

Train Short, Test Long: Attention with Linear Biases Enables Input Length Extrapolation

WizardMath: Empowering Mathematical Reasoning for Large Language Models
  via Reinforced Evol-Instruct

CMB: A Comprehensive Medical Benchmark in Chinese

FinEval: A Chinese Financial Domain Knowledge Evaluation Benchmark for
  Large Language Models

CLEVA: Chinese Language Models EVAluation Platform

Benchmarking Large Language Models on Controllable Generation under
  Diversified Instructions

Emotional Theory of Mind: Bridging Fast Visual Processing with Slow
  Linguistic Reasoning

TencentLLMEval: A Hierarchical Evaluation of Real-World Capabilities for
  Human-Aligned LLMs

Orion-14B: Open-source Multilingual Large Language Models


Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes

Whole genome sequencing of skull-base chordoma reveals genomic alterations associated with recurrence and chordoma-specific survival

The genomic and epigenomic evolutionary history of papillary renal cell carcinomas

Genetic Characteristics Associated With Drug Resistance in Lung Cancer and Colorectal Cancer Using Whole Exome Sequencing of Cell-Free DNA


A simplified implemention of Faster R-CNN that replicate performance from origin paper

Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks

Transferable Adversarial Attacks for Image and Video Object Detection

MUSCO: Multi-Stage Compression of neural networks

A Fluorescent Biosensor for Sensitive Detection of Salmonella Typhimurium Using Low-Gradient Magnetic Field and Deep Learning via Faster Region-Based Convolutional Neural Network


brat rapid annotation tool (brat) - for all your textual annotation needs

Pre-train or Annotate? Domain Adaptation with a Constrained Budget

RTE: A Tool for Annotating Relation Triplets from Text