KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus

Proceedings of the National Academy of Sciences of the United States of America

Exploring the Past Biosphere of Chew Bahir/Southern Ethiopia: Cross-Species Hybridization Capture of Ancient Sedimentary DNA from a Deep Drill Core

Genomic epidemiology of Mycobacterium avium subsp. paratuberculosis isolates from Canadian dairy herds provides evidence for multiple infection events

Diverse recruitment to a globally structured atmospheric microbiome

Leptospira enrichment culture followed by ONT metagenomic sequencing allows better detection of Leptospira presence and diversity in water and soil samples

Shotgun-metagenomics reveals a highly diverse and communal microbial network present in the drains of three beef-processing plants

Frontiers in cellular and infection microbiology

Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks

LABRADOR—A Computational Workflow for Virus Detection in High-Throughput Sequencing Data

Rescue of Mycobacterium bovis DNA Obtained from Cultured Samples during Official Surveillance of Animal TB: Key Steps for Robust Whole Genome Sequence Data Generation

International journal of molecular sciences

Kraken2 Human Pangenome Reference Consortium database


:bar_chart: Benchmark multiple object trackers (MOT) in Python

MOT16: A Benchmark for Multi-Object Tracking

Quasi-Dense Similarity Learning for Multiple Object Tracking

SLEAP: A deep learning system for multi-animal pose tracking

Multi-animal pose estimation, identification and tracking with DeepLabCut

RetinaTrack: Online Single Stage Joint Detection and Tracking

SimpleTrack: Understanding and Rethinking 3D Multi-object Tracking

QDTrack: Quasi-Dense Similarity Learning for Appearance-Only Multiple Object Tracking

Occlusion-Robust Online Multi-Object Visual Tracking using a GM-PHD Filter with CNN-Based Re-Identification

Motion-compensated online object tracking for activity detection and crowd behavior analysis

Real-time 3D Deep Multi-Camera Tracking


Torch implementation of ResNet from http://arxiv.org/abs/1512.03385 and training scripts

Deep Residual Learning for Image Recognition

Going Deeper with Convolutions

Densely Connected Convolutional Networks

Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

International Journal of Computer Vision

Identity Mappings in Deep Residual Networks

Wide Residual Networks

XNOR-Net: ImageNet Classification Using Binary Convolutional Neural Networks

Cyclical Learning Rates for Training Neural Networks

Deep Networks with Stochastic Depth

Deep Sets


Ad block engine used in the Brave browser for ABP filter syntax based lists like EasyList.

Who Filters the Filters: Understanding the Growth, Usefulness and Efficiency of Crowdsourced Ad Blocking

SpeedReader: Reader Mode Made Fast and Private

Security: Doing Whatever is Needed... and Not a Thing More!


Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

Improving the diagnostic yield of exome- sequencing by predicting gene–phenotype associations using large-scale gene expression analysis

Brain expression quantitative trait locus and network analyses reveal downstream effects and putative drivers for brain-related diseases

Cell Specific eQTL Analysis without Sorting Cells

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells

Deconvolution of bulk blood eQTL effects into immune cell subpopulations

Mendelian Randomization analysis reveals a causal influence of circulating sclerostin levels on bone mineral density and fractures

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals

Single-Cell Dissection of the Immune Response After Acute Myocardial Infarction

Common Germline Risk Variants Impact Somatic Alterations and Clinical Features across Cancers


Origin is a set of toolkits that together provide a system for issuance and management of Energy Attribute Certificates


DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

BLOOM: A 176B-Parameter Open-Access Multilingual Language Model

VideoMAE: Masked Autoencoders are Data-Efficient Learners for Self-Supervised Video Pre-Training

ZeRO: Memory Optimizations Toward Training Trillion Parameter Models

Using DeepSpeed and Megatron to Train Megatron-Turing NLG 530B, A Large-Scale Generative Language Model

GIT: A Generative Image-to-text Transformer for Vision and Language

A Comprehensive Survey of AI-Generated Content (AIGC): A History of Generative AI from GAN to ChatGPT

ZeRO-Offload: Democratizing Billion-Scale Model Training

ZeroQuant: Efficient and Affordable Post-Training Quantization for Large-Scale Transformers

UnifiedSKG: Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Models

Parallel Physics-Informed Neural Networks via Domain Decomposition


RHadoop

Statistical methods and computing for big data

Big Data Systems Meet Machine Learning Challenges: Towards Big Data Science as a Service

A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures

kamila: Clustering Mixed-Type Data in R and Hadoop

A Survey on Spatio-temporal Data Analytics Systems

A tm Plug-In for Distributed Text Mining in R

ROSA: R Optimizations with Static Analysis


Prompt Learning for Vision-Language Models (IJCV'22, CVPR'22)

Learning to Prompt for Vision-Language Models

Conditional Prompt Learning for Vision-Language Models

Visual-Language Prompt Tuning with Knowledge-guided Context Optimization

Understanding and Mitigating Overfitting in Prompt Tuning for Vision-Language Models

Multitask Vision-Language Prompt Tuning

Enhancing CLIP with GPT-4: Harnessing Visual Descriptions as Prompts

BrainCLIP: Bridging Brain and Visual-Linguistic Representation Via CLIP for Generic Natural Visual Stimulus Decoding

How Does Fine-Tuning Impact Out-of-Distribution Detection for Vision-Language Models?

Distribution-Aware Prompt Tuning for Vision-Language Models

Amortized Prompt: Lightweight Fine-Tuning for CLIP in Domain Generalization


Population-scale genotyping using pangenome graphs

Graphtyper enables population-scale genotyping using pangenome graphs

GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs

Multiomics study of nonalcoholic fatty liver disease

Author Correction: Rare SLC13A1 variants associate with intervertebral disc disorder highlighting role of sulfate in disc pathology

Accurate sequence variant genotyping in cattle using variation-aware genome graphs

Novel sequencing technologies and bioinformatic tools for deciphering the non-coding genome

Thirty novel sequence variants impacting human intracranial volume


Goodman Data Reduction Pipeline

Discovery of 74 new bright ZZ Ceti stars in the first three years of TESS

The Diverse Properties of Type Icn Supernovae Point to Multiple Progenitor Channels

Confirming new changing-look AGNs discovered through optical variability using a random forest-based light-curve classifier

Monthly Notices of the Royal Astronomical Society: Letters

Activity and Rotation of Nearby Field M Dwarfs in the TESS Southern Continuous Viewing Zone

The bright blue side of the night sky: Spectroscopic survey of bright and hot (pre-) white dwarfs

Pulsating hydrogen-deficient white dwarfs and pre-white dwarfs observed with TESS - IV. Discovery of two new GW Vir stars: TIC 0403800675 and TIC 1989122424

A newborn active galactic nucleus in a star-forming galaxy

A comprehensive search for hot subdwarf stars using Gaia and TESS I.
  Pulsating hot subdwarf B stars


A Python framework for high performance GPU simulation and graphics

ManiSkill2: A Unified Benchmark for Generalizable Manipulation Skills

ANYmal Parkour: Learning Agile Navigation for Quadrupedal Robots

FluidLab: A Differentiable Environment for Benchmarking Complex Fluid Manipulation

IndustReal: Transferring Contact-Rich Assembly Tasks from Simulation to Reality

Agile But Safe: Learning Collision-Free High-Speed Legged Locomotion

Rethinking Optimization with Differentiable Simulation from a Global Perspective

Dynamic Mesh-Aware Radiance Fields

DexDeform: Dexterous Deformable Object Manipulation with Human Demonstrations and Differentiable Physics

PhysDreamer: Physics-Based Interaction with 3D Objects via Video Generation

cuRobo: Parallelized Collision-Free Minimum-Jerk Robot Motion Generation


Sea ice dynamics in the Bransfield Strait, Antarctic Peninsula, during the past 240 years: a multi-proxy intercomparison study

Physical Dormancy Release in Medicago truncatula Seeds Is Related to Environmental Variations

Humic Acid Mitigates the Negative Effects of High Rates of Biochar Application on Microbial Activity

A genomics resource for genetics, physiology, and breeding of West African sorghum

Reactive oxygen species are regulated by immune deficiency and Toll pathways in determining the host specificity of honeybee gut bacteria

Utilization of a Wheat50K SNP Microarray-Derived High-Density Genetic Map for QTL Mapping of Plant Height and Grain Traits in Wheat

Selection and adaptive introgression guided the complex evolutionary history of the European common bean

Diverse and mobile: eccDNA-based identification of carrot low-copy-number LTR retrotransposons active in callus cultures.

The Plant journal : for cell and molecular biology

The Effects of Genetic Relatedness on the Preterm Infant Gut Microbiota

Discovery of Genomic Regions and Candidate Genes Controlling Root Development Using a Recombinant Inbred Line Population in Rapeseed (Brassica napus L.)


A scikit-learn compatible neural network library that wraps PyTorch

Machine Learning in Python: Main developments and technology trends in data science, machine learning, and artificial intelligence

A scikit-based Python environment for performing multi-label classification

Predicting the global far-infrared SED of galaxies via machine learning techniques

Mining Documentation to Extract Hyperparameter Schemas

Using Base-ml to Learn Classification of Common Vestibular Disorders on DizzyReg Registry Data

Brain Age Revisited: Investigating the State vs. Trait Hypotheses of EEG-derived Brain-Age Dynamics with Deep Learning


eBPF-based Networking, Security, and Observability

Lic-Sec: an enhanced AppArmor Docker security profile generator

Synthesizing Safe and Efficient Kernel Extensions for Packet Processing

Sound, Precise, and Fast Abstract Interpretation with Tristate Numbers

Safe and Efficient Remote Application Code Execution on Disaggregated NVM Storage with eBPF

Aggregation-Based Gossip for Certificate Transparency

Aggregation-Based Certificate Transparency Gossip

BPF-oF: Storage Function Pushdown Over the Network


scikit-mobility: mobility analysis in Python

(So) Big Data and the transformation of the city

International Journal of Data Science and Analytics

PCT-TEE: Trajectory-based Private Contact Tracing System with Trusted Execution Environment

Deep Learning for Trajectory Data Management and Mining: A Survey and
  Beyond


Python healpix maps tools

The Dark Energy Survey: Data Release 1

The Astrophysical Journal Supplement Series

Weak Lensing for Precision Cosmology

Annual Review of Astronomy and Astrophysics

Dark Energy Survey Year 1 Results: The Photometric Data Set for Cosmology

Stellar Streams Discovered in the Dark Energy Survey

The Dark Energy Survey Data Release 2

Planck intermediate results. LVII. Joint Planck LFI and HFI data processing

HAL (Le Centre pour la Communication Scientifique Directe)

Dark Energy Survey Year 3 Results: Photometric Data Set for Cosmology

NIFTY – Numerical Information Field Theory - A versatile PYTHON library for signal inference

Cross-correlatingPlanckCMB lensing with SDSS: lensing–lensing and galaxy–lensing cross-correlations

The meaning of WISE colours - I. The Galaxy and its satellites


Image Restoration Toolbox (PyTorch). Training and testing codes for DPIR, USRNet, DnCNN, FFDNet, SRMD, DPSR, BSRGAN, SwinIR

AIM 2020 Challenge on Efficient Super-Resolution: Methods and Results

Plug-and-Play Algorithms for Video Snapshot Compressive Imaging

DOLCE: A Model-Based Probabilistic Diffusion Framework for Limited-Angle CT Reconstruction

URNet: A U-Shaped Residual Network for Lightweight Image Super-Resolution

Multi-Resolution Data Fusion for Super Resolution Imaging

Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy

Total Variation Optimization Layers for Computer Vision

A Deep Learning Scheme for Efficient Multimedia IoT Data Compression

NF-ULA: Normalizing Flow-Based Unadjusted Langevin Algorithm for Imaging Inverse Problems

The ADMM-PINNs Algorithmic Framework for Nonsmooth PDE-Constrained Optimization: A Deep Learning Approach


Frame-type Sensitive RDO Control for Content-Adaptive-encoding

Direct Optimisation of  for HDR Content Adaptive Transcoding in AV1

Comparison of HDR quality metrics in Per-Clip Lagrangian multiplier optimisation with AV1


Metasploitable3 is a VM that is built from the ground up with a large amount of security vulnerabilities.

TON_IoT Telemetry Dataset: A New Generation Dataset of IoT and IIoT for Data-Driven Intrusion Detection Systems

Federated TON_IoT Windows Datasets for Evaluating AI-based Security Applications

Data Analytics-enabled Intrusion Detection: Evaluations of ToN_IoT Linux Datasets

Densely Connected Residual Network for Attack Recognition

PTHelper: An open source tool to support the Penetration Testing process


A python library built to empower developers to build applications and systems  with self-contained Computer Vision capabilities

Influence of the Computer-Aided Decision Support System Design on Ultrasound-Based Breast Cancer Classification

Natural Analogues in pH Variability and Predictability across the Coastal Pacific Estuaries: Extrapolation of the Increased Oyster Dissolution under Increased pH Amplitude and Low Predictability Related to Ocean Acidification

Object Detection Based Handwriting Localization

BactoSpin: Novel Technology for Rapid Bacteria Detection and Antibiotic Susceptibility Testing

Affective Episodic Memory System for Virtual Creatures: The First Step of Emotion-Oriented Memory

Computational intelligence and neuroscience


Unofficial implementation of ZipNeRF

Zip-NeRF: Anti-Aliased Grid-Based Neural Radiance Fields

Mip-Splatting: Alias-free 3D Gaussian Splatting

Simple-RF: Regularizing Sparse Input Radiance Fields with Simpler Solutions


An end-to-end library for editing and rendering motion of 3D characters with deep learning [SIGGRAPH 2020]

Skeleton-Aware Networks for Deep Motion Retargeting

Unpaired Motion Style Transfer from Video to Animation

HuMoT: Human Motion Representation using Topology-Agnostic Transformers for Character Animation Retargeting


Harrell Miscellaneous

Predicted Shifts in Small Mammal Distributions and Biodiversity in the Altered Future Environment of Alaska: An Open Access Data and Machine Learning Perspective

Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals

Selfish chromosomal drive shapes recent centromeric histone evolution in monkeyflowers

Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

Alternative dietary protein and water temperature influence the skin and gut microbial communities of yellowtail kingfish (Seriola lalandi)

Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunction and microbial dysbiosis in the gut lumen

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale

Genome-Wide Network of lncRNA–mRNA During Ovine Oocyte Development From Germinal Vesicle to Metaphase II in vitro

Virome Sequencing of the Human Intestinal Mucosal–Luminal Interface


Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

Computational methods for 16S metabarcoding studies using Nanopore sequencing data

Computational and structural biotechnology journal

Pavian: Interactive analysis of metagenomics data for microbiomics and pathogen identification

New Invasive Nemertean Species (Cephalothrix Simula) in England with High Levels of Tetrodotoxin and a Microbiome Linked to Toxin Metabolism

The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae

Microbiome Analysis of the Rhizosphere from Wilt Infected Pomegranate Reveals Complex Adaptations in Fusarium—A Preliminary Study

Contamination detection and microbiome exploration with GRIMER

Enhanced leachate phytodetoxification test combined with plants and rhizobacteria bioaugmentation

Diversity of Decomposer Bacteria in Eco Enzyme Fermentation Process of Organic Materials Using Oxford Nanopore Technology (ONT) and its Effectiveness in Inhibiting E-coli in Fish Pond with Water Mineral Soil


a biodiversity dataset tracker

Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity

New chrysilline and aelurilline jumping spiders from Pakistan (Araneae, Salticidae)

Toward reliable biodiversity dataset references

To connect is to preserve: on frugal data integration and preservation solutions

A biodiversity dataset graph: GBIF, iDigBio, BioCASe hash://sha256/8aacce08462b87a345d271081783bdd999663ef90099212c8831db399fc0831b

Zenodo (CERN European Organization for Nuclear Research)

Nomer Corpus of Taxonomic Resources hash://sha256/6224f259190590c7aed4784de2b27b3005eea0042ae02993ebf7a0fe30d87137


Data generation and submission scripts for the QCArchive ecosystem.

End-to-End Differentiable Molecular Mechanics Force Field Construction

EspalomaCharge: Machine Learning-Enabled Ultrafast Partial Charge Assignment

Capturing non-local through-bond effects when fragmenting molecules for quantum chemical torsion scans

Machine-learned molecular mechanics force fields from large-scale quantum chemical data

Capturing non-local through-bond effects in molecular mechanics force fields: II. Using fractional bond orders to fit torsion parameters


State of the art mutation testing system for the JVM

Automatic Generation of Pull Request Descriptions

Automatic test improvement with DSpot: a study with ten mature open-source projects

Mutation testing in the wild: findings from GitHub

Is the Stack Distance Between Test Case and Method Correlated With Test Effectiveness?

PROCEEDINGS OF EASE 2019 - EVALUATION AND ASSESSMENT IN SOFTWARE ENGINEERING

Attention: Not Just Another Dataset for Patch-Correctness Checking


Toy Python implementation of http://www-nlp.stanford.edu/projects/glove/

Fine-Tuning BERT for Sentiment Analysis of Vietnamese Reviews

Context-Aware Misinformation Detection: A Benchmark of Deep Learning Architectures Using Word Embeddings

Learning to Learn from Web Data through Deep Semantic Embeddings

Self-Supervised Learning from Web Data for Multimodal Retrieval

Trace Encoding in Process Mining: a survey and benchmarking

DANES: Deep Neural Network Ensemble Architecture for Social and Textual Context-aware Fake News Detection

Tsetlin Machine Embedding: Representing Words Using Logical Expressions

TextTopicNet - Self-Supervised Learning of Visual Features Through Embedding Images on Semantic Text Spaces

Estimating Glycemic Impact of Cooking Recipes via Online Crowdsourcing and Machine Learning

Proceedings of the 9th International Conference on Digital Public Health

Navigating the Kaleidoscope of COVID-19 Misinformation Using Deep Learning


A lightweight conic solver for second-order cone programming.

BROJA-2PID: A Robust Estimator for Bivariate Partial Information Decomposition

A Deep Reinforcement Learning Approach for Finding Non-Exploitable Strategies in Two-Player Atari Games

Parallel-beam X-ray CT datasets of apples with internal defects and label balancing for machine learning


Brain Modeling Toolkit

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0

BioNet: A Python interface to NEURON for modeling large-scale networks

Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits

Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data


OpenMMLab Multimodal Advanced, Generative, and Intelligent Creation Toolbox. Unlock the magic : Generative-AI (AIGC), easy-to-use APIs, awsome model zoo, diffusion models, for text-to-image generation, image/video restoration/enhancement, etc.

Deformable Convolutional Networks

EDVR: Video Restoration with Enhanced Deformable Convolutional Networks

BasicVSR: The Search for Essential Components in Video Super-Resolution and Beyond

BasicVSR++: Improving Video Super-Resolution with Enhanced Propagation and Alignment

GPT4Tools: Teaching Large Language Model to Use Tools via Self-instruction

Scene Text Image Super-Resolution in the Wild

Disentangling Hate in Online Memes

PROCEEDINGS OF THE 29TH ACM INTERNATIONAL CONFERENCE ON MULTIMEDIA, MM 2021

Prompting for Multimodal Hateful Meme Classification

AdaInt: Learning Adaptive Intervals for 3D Lookup Tables on Real-time Image Enhancement

Texture Memory-Augmented Deep Patch-Based Image Inpainting


The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Joint Learning of Motion Estimation and Segmentation for Cardiac MR Image Sequences

Structural brain imaging in Alzheimer’s disease and mild cognitive impairment: biomarker analysis and shared morphometry database

Deformable Slice-to-Volume Registration for Motion Correction of Fetal Body and Placenta MRI

Universal atrial coordinates applied to visualisation, registration and construction of patient specific meshes

Constructing a Human Atrial Fibre Atlas

PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI

Automatic Segmentation of White Matter Hyperintensities from Brain Magnetic Resonance Images in the Era of Deep Learning and Big Data – A Systematic Review

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society

Parcellation of the neonatal cortex using Surface-based Melbourne Children’s Regional Infant Brain atlases (M-CRIB-S)

Joint Motion Estimation and Segmentation from Undersampled Cardiac MR Image

Machine Learning for Medical Image Reconstruction

Fully Automatic Atrial Fibrosis Assessment Using a Multilabel Convolutional Neural Network


Neuroscience information exchange format

Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience

Workflow for health-related and brain data lifecycle

Development of the Neurodata Without Borders: Neurophysiology file format

Integrating data storage and annotation in the data workflow using the NIX format and libraries


The posterior R package

Hamiltonian Monte Carlo using an adjoint-differentiated Laplace approximation: Bayesian inference for latent Gaussian models and beyond

Nested R̂: Assessing Convergence for Markov chain Monte Carlo when using many short chains.

Simulating Ising and Potts models at critical and cold temperatures using auxiliary Gaussian variables


Code for "Social GAN: Socially Acceptable Trajectories with Generative Adversarial Networks", Gupta et al, CVPR 2018

Peeking into the Future: Predicting Future Person Activities and Locations in Videos

PRECOG: PREdiction Conditioned On Goals in Visual Multi-Agent Settings

From Goals, Waypoints & Paths To Long Term Human Trajectory Forecasting

What the Constant Velocity Model Can Teach Us About Pedestrian Motion Prediction

The Garden of Forking Paths: Towards Multi-Future Trajectory Prediction

Analyzing the Variety Loss in the Context of Probabilistic Trajectory Prediction

Deep Learning for Vision-based Prediction: A Survey

Social Interpretable Tree for Pedestrian Trajectory Prediction

Improving Movement Predictions of Traffic Actors in Bird's-Eye View Models using GANs and Differentiable Trajectory Rasterization


[ICCV 2019] "DeblurGAN-v2: Deblurring (Orders-of-Magnitude) Faster and Better" by Orest Kupyn, Tetiana Martyniuk, Junru Wu, Zhangyang Wang

Parallel Diffusion Models of Operator and Image for Blind Inverse Problems

GibbsDDRM: A Partially Collapsed Gibbs Sampler for Solving Blind Inverse Problems with Denoising Diffusion Restoration

Blind Image Deblurring with Unknown Kernel Size and Substantial Noise

BAD-Gaussians: Bundle Adjusted Deblur Gaussian Splatting

DMPlug: A Plug-in Method for Solving Inverse Problems with Diffusion Models

Kernel Diffusion: An Alternate Approach to Blind Deconvolution


C++ API & command-line toolkit for working with BAM data

BlobToolKit – Interactive Quality Assessment of Genome Assemblies

β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

Insights into HLA-G Genetics Provided by Worldwide Haplotype Diversity

PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms

Genome-wide somatic variant calling using localized colored de Bruijn graphs

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

YES1 amplification is a mechanism of acquired resistance to EGFR inhibitors identified by transposon mutagenesis and clinical genomics

Proceedings of the National Academy of Sciences of the United States of America

Inter-individual variability contrasts with regional homogeneity in the human brain DNA methylome


Python package for graph statistics

GraSPy: Graph Statistics in Python

Graph Independence Testing

SaGess: Sampling Graph Denoising Diffusion Model for Scalable Graph Generation

Bilingual Lexicon Induction for Low-Resource Languages using Graph Matching via Optimal Transport

Valid Two-Sample Graph Testing via Optimal Transport Procrustes and Multiscale Graph Correlation with Applications in Connectomics

An Analysis of Euclidean vs. Graph-Based Framing for Bilingual Lexicon Induction from Word Embedding Spaces

Correcting a nonparametric two-sample graph hypothesis test for graphs with different numbers of vertices with applications to connectomics

Discovery of Multi-Level Network Differences Across Populations of Heterogeneous Connectomes


A large scale non-linear optimization library

Omni-Swarm: A Decentralized Omnidirectional Visual–Inertial–UWB State Estimation System for Aerial Swarms

Exploring Event Camera-based Odometry for Planetary Robots

From the desks of ROS maintainers: A survey of modern & capable mobile robotics algorithms in the robot operating system 2

Efficient and Consistent Bundle Adjustment on Lidar Point Clouds

Contour Context: Abstract Structural Distribution for 3D LiDAR Loop Detection and Metric Pose Estimation

Edge-Based Monocular Thermal-Inertial Odometry in Visually Degraded Environments

A Coarse-to-Fine Framework for Dual-Arm Manipulation of Deformable Linear Objects with Whole-Body Obstacle Avoidance

Coarse-to-Fine Hybrid 3D Mapping System With Co-Calibrated Omnidirectional Camera and Non-Repetitive LiDAR

GICI-LIB: A GNSS/INS/Camera Integrated Navigation Library

SR-LIO: LiDAR-Inertial Odometry with Sweep Reconstruction


Public domain software for processing and analyzing scientific images

Tsc1 haploinsufficiency in Nkx2.1 cells upregulates hippocampal interneuron mTORC1 activity, impairs pyramidal cell synaptic inhibition, and alters contextual fear discrimination and spatial working memory in mice

Microglial morphometric analysis: so many options, so little consistency

GSTpi regulates VE-cadherin stabilization through promoting S-glutathionylation of Src

Development of a conductive biocomposite combining graphene and amniotic membrane for replacement of the neuronal network of tissue-engineered urinary bladder

DW2009 Elevates the Efficacy of Donepezil against Cognitive Impairment in Mice

IL-22 regulates endometrial regeneration by enhancing tight junctions and orchestrating extracellular matrix

Imaging Meets Cytometry: Analyzing Heterogeneous Functional Microscopic Data from Living Cell Populations

Role of EmaSR in Ethanol Metabolism by Acinetobacter baumannii

International journal of molecular sciences

A Weakly Supervised Learning Method for Cell Detection and Tracking Using Incomplete Initial Annotations

Preventive Effects of Chlorogenic Acid on Alveolar Bone Loss in Ligature-Induced Periodontitis in Mice


A bestiary of evolutionary, swarm and other metaphor-based algorithms

Nature-Inspired Algorithms for Wireless Sensor Networks: A Comprehensive Survey

Mitigating Metaphors: A Comprehensible Guide to Recent Nature-Inspired Algorithms

A comprehensive database of Nature-Inspired Algorithms

The Evolutionary Computation Methods No One Should Use


State-of-the-Art Conversational AI with Transfer Learning

TransferTransfo: A Transfer Learning Approach for Neural Network Based Conversational Agents

Large Language Models Can Be Strong Differentially Private Learners

You Impress Me: Dialogue Generation via Mutual Persona Perception

CAiRE: An End-to-End Empathetic Chatbot

A Large-Scale Chinese Short-Text Conversation Dataset

Neural Generation Meets Real People: Towards Emotionally Engaging Mixed-Initiative Conversations

Controlling Dialogue Generation with Semantic Exemplars

A New Linear Scaling Rule for Private Adaptive Hyperparameter Optimization

CheerBots: Chatbots toward Empathy and Emotionusing Reinforcement Learning

Learning Health-Bots from Training Data that was Automatically Created using Paraphrase Detection and Expert Knowledge

International Conference on Computational Linguistics


Vocal Remover using Deep Neural Networks

Singing Voice Separation with Deep U-Net Convolutional Networks

International Society for Music Information Retrieval Conference

Multi-scale Multi-band DenseNets for Audio Source Separation


Efficient neural speech synthesis

LPCNet: Improving Neural Speech Synthesis Through Linear Prediction

A Survey on Neural Speech Synthesis

A Real-Time Wideband Neural Vocoder at 1.6 kb/s Using LPCNet

Half-Truth: A Partially Fake Audio Detection Dataset

High quality, lightweight and adaptable TTS using LPCNet

Improving Opus Low Bit Rate Quality with Neural Speech Synthesis

Towards Natural Bilingual and Code-Switched Speech Synthesis Based on Mix of Monolingual Recordings and Cross-Lingual Voice Conversion

FeatherWave: An efficient high-fidelity neural vocoder with multi-band linear prediction

Towards Natural and Controllable Cross-Lingual Voice Conversion Based on Neural TTS Model and Phonetic Posteriorgram

Speaker independence of neural vocoders and their effect on parametric resynthesis speech enhancement


Hummingbird compiles trained ML models into tensor computation for faster inference.

A Tensor Compiler for Unified Machine Learning Prediction Serving

Query Processing on Tensor Computation Runtimes

Privacy-Preserving Tree-Based Inference with TFHE


Embeddable genomic visualization component based on the Integrative Genomics Viewer

UALCAN: An update to the integrated cancer data analysis platform

CeNDR, the Caenorhabditis elegans natural diversity resource

igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)

T1TAdb: the database of type I toxin–antitoxin systems

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

Ten simple rules for researchers who want to develop web apps

proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms

Visualization tools for human structural variations identified by whole-genome sequencing

Comparative assessment of long-read error-correction software applied to RNA-sequencing data

Multi Locus View: an extensible web-based tool for the analysis of genomic data.


An open-source C++ library developed and used at Facebook.

Concurrent Hash Tables: Fast and General?(!)

Jointly Optimizing Preprocessing and Inference for DNN-based Visual Analytics

Malthusian Locks

StreamBox-HBM: Stream Analytics on High Bandwidth Hybrid Memory

Exploiting Parallelism Opportunities with Deep Learning Frameworks

Towards understanding the costs of avoiding out-of-thin-air results

Proceedings of the ACM on Programming Languages

FELIX based readout of the Single-Phase ProtoDUNE detector

DAQling: an open-source data acquisition framework

Is Parallel Programming Hard, And, If So, What Can You Do About It? (Release v2023.06.11a)


Unsupervised Data Augmentation (UDA)

Unsupervised Data Augmentation for Consistency Training

Not All Unlabeled Data are Equal: Learning to Weight Data in Semi-supervised Learning

Uncertainty-aware Self-training for Text Classification with Few Labels

Semi-Supervised Text Classification with Balanced Deep Representation Distributions

Meeting of the Association for Computational Linguistics

Progressive Class Semantic Matching for Semi-supervised Text Classification

Feature-aware conditional GAN for category text generation

PseudoReasoner: Leveraging Pseudo Labels for Commonsense Knowledge Base Population


Paparazzi is a free and open-source hardware and software project for unmanned (air) vehicles. This is the main software repository.

Neuromorphic control for optic-flow-based landing of MAVs using the Loihi processor

Evolved Neuromorphic Control for High Speed Divergence-Based Landings of MAVs

International Conference on Robotics and Automation

An Overview of the Drone Open-Source Ecosystem

Collaborative target-tracking control using multiple autonomous fixed-wing UAVs with constant speeds : Theory and experiments

Understanding Bounding Functions in Safety-Critical UAV Software


oneAPI Deep Neural Network Library (oneDNN)

AI Benchmark: All About Deep Learning on Smartphones in 2019

CosmoFlow: Using Deep Learning to Learn the Universe at Scale

FT-CNN: Algorithm-Based Fault Tolerance for Convolutional Neural Networks

IEEE Transactions on Parallel and Distributed Systems

Accelerating Data Loading in Deep Neural Network Training

International Conference on High Performance Computing

Bolt: Bridging the Gap between Auto-tuners and Hardware-native Performance

High-Performance Deep Learning via a Single Building Block

Efficient Execution of Quantized Deep Learning Models: A Compiler Approach

Flashlight: Enabling Innovation in Tools for Machine Learning

Error Analysis and Improving the Accuracy of Winograd Convolution for Deep Neural Networks

SparseTrain: Leveraging Dynamic Sparsity in Software for Training DNNs on General-Purpose SIMD Processors


A C library for parsing/normalizing street addresses around the world. Powered by statistical NLP and open geo data.

The gender gap in science: How long until women are equally represented?

An End-to-end Point of Interest (POI) Conflation Framework

Leveraging Subword Embeddings for Multinational Address Parsing

"Breaking" Disasters: Predicting and Characterizing the Global News Value of Natural and Man-made Disasters

Automatic Identification of Addresses: A Systematic Literature Review

ISPRS International Journal of Geo-Information

Multinational Address Parsing: A Zero-Shot Evaluation

Fighting crime with Transformers: Empirical analysis of address parsing
  methods in payment data

Deepparse : An Extendable, and Fine-Tunable State-Of-The-Art Library for Parsing Multinational Street Addresses


The Julia Programming Language

Array operators using multiple dispatch: a design methodology for array implementations in dynamic languages

Evaluating performance and portability of high-level programming models: Julia, Python/Numba, and Kokkos on exascale nodes

Quality gatekeepers: investigating the effects of code review bots on pull request activities

Potential of the Julia Programming Language for High Energy Physics Computing

Productivity meets Performance: Julia on A64FX

ComPile: A Large IR Dataset from Production Sources

The Influence of Air Pollution on the Development of Allergic Inflammation in the Airways in Krakow’s Atopic and Non-Atopic Residents

Clinical Characteristics and Management of Angioedema Attacks in Polish Adult Patients with Hereditary Angioedema Due to C1-Inhibitor Deficiency

Backports: Change Types, Challenges and Strategies

Proceedings of the 30th IEEE/ACM International Conference on Program Comprehension

Koopman Spectrum Nonlinear Regulators and Efficient Online Learning


NOVOPlasty - The organelle assembler and heteroplasmy caller

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

A systematic comparison of chloroplast genome assembly tools

Unraveling heteroplasmy patterns with NOVOPlasty

Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

bioRxiv : the preprint server for biology

Complete chloroplast genome sequence and phylogenetic analysis of Spathiphyllum 'Parrish'

Degradation of key photosynthetic genes in the critically endangered semi-aquatic flowering plant Saniculiphyllum guangxiense (Saxifragaceae)

Sequence Characteristics and Phylogenetic Analysis of the Artemisia argyi Chloroplast Genome

Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing

Complete Chloroplast Genome Analysis of Two Important Medicinal Alpinia Species: Alpinia galanga and Alpinia kwangsiensis


Python Package for Airborne RGB machine learning


detrex is a research platform for DETR-based object detection, segmentation, pose estimation and other visual recognition tasks.

End-to-End Object Detection with Transformers

Deformable DETR: Deformable Transformers for End-to-End Object Detection

Grounding DINO: Marrying DINO with Grounded Pre-Training for Open-Set Object Detection

DINO: DETR with Improved DeNoising Anchor Boxes for End-to-End Object Detection

DN-DETR: Accelerate DETR Training by Introducing Query DeNoising

Conditional DETR for Fast Training Convergence

DAB-DETR: Dynamic Anchor Boxes are Better Queries for DETR

DETRs with Hybrid Matching

Enhanced Training of Query-Based Object Detection via Selective Query Recollection

V3Det: Vast Vocabulary Visual Detection Dataset


The Python Control Systems Library is a Python module that implements basic operations for analysis and design of feedback control systems.

Comparison of different control theories on a two wheeled self balancing robot

Koopman-Assisted Reinforcement Learning

Advanced Lecture for PID Controller of Nonlinear System in Python

The International Journal of Recent Technology and Engineering (IJRTE)

Partially latent factors based multi-view subspace learning


jsoup: the Java HTML parser, built for HTML editing, cleaning, scraping, and XSS safety.

Automatic test improvement with DSpot: a study with ten mature open-source projects

Putting the Semantics into Semantic Versioning

A comprehensive study of pseudo-tested methods

Developer-centric test amplification

Evaluating data-flow coverage in spectrum-based fault localization

Cerebro: Static Subsuming Mutant Selection

IEEE Transactions on Software Engineering

Commit-Aware Mutation Testing

International Conference on Software Maintenance

An approach and benchmark to detect behavioral changes of commits in continuous integration

Predicting Crash Fault Residence via Simplified Deep Forest Based on A Reduced Feature Set

On the use of commit-relevant mutants


GLIGEN: Open-Set Grounded Text-to-Image Generation

Directed Diffusion: Direct Control of Object Placement through Attention Guidance

Kandinsky: an Improved Text-to-Image Synthesis with Image Prior and Latent Diffusion

VideoDirectorGPT: Consistent Multi-scene Video Generation via LLM-Guided Planning

LLaVA-Interactive: An All-in-One Demo for Image Chat, Segmentation, Generation and Editing

DiagrammerGPT: Generating Open-Domain, Open-Platform Diagrams via LLM Planning

DiffUHaul: A Training-Free Method for Object Dragging in Images


Deep recommender models using PyTorch.

Session-based Recommendations with Recurrent Neural Networks

RecBole: Towards a Unified, Comprehensive and Efficient Framework for Recommendation Algorithms

Surprise: A Python library for recommender systems

Elliot: A Comprehensive and Rigorous Framework for Reproducible Recommender Systems Evaluation

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

Clinical and translational values of spatial transcriptomics

Signal transduction and targeted therapy

Linearly Convergent Frank-Wolfe with Backtracking Line-Search

SSLRec: A Self-Supervised Learning Framework for Recommendation

Reinforced Imitative Graph Learning for Mobile User Profiling

Sequential Recommendations on GitHub Repository

Online POI Recommendation: Learning Dynamic Geo-Human Interactions in Streams


A Linux-capable RISC-V multicore for and by the world

OpenABC-D: A Large-Scale Dataset For Machine Learning Guided Integrated Circuit Synthesis

Assessment of Reinforcement Learning for Macro Placement

Hier-RTLMP: A Hierarchical Automatic Macro Placer for Large-scale Complex IP Blocks

Too Big to Fail? Active Few-Shot Learning Guided Logic Synthesis


The implementation of DeBERTa

DeBERTa: Decoding-enhanced BERT with Disentangled Attention

DeBERTaV3: Improving DeBERTa using ELECTRA-Style Pre-Training with Gradient-Disentangled Embedding Sharing

Performance-Efficiency Trade-Offs in Unsupervised Pre-Training for Speech Recognition

LoSparse: Structured Compression of Large Language Models based on Low-Rank and Sparse Approximation

Z-Code++: A Pre-trained Language Model Optimized for Abstractive Summarization

Deep Lexical Hypothesis: Identifying personality structure in natural language

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

ConnPrompt: Connective-cloze Prompt Learning for Implicit Discourse Relation Recognition

Bringing order into the realm of Transformer-based language models for artificial intelligence and law

SocioProbe: What, When, and Where Language Models Learn about Sociodemographics


Automatic architecture search and hyperparameter optimization for PyTorch

Auto-PyTorch Tabular: Multi-Fidelity MetaLearning for Efficient and Robust AutoDL

Towards Automatically-Tuned Deep Neural Networks

The Springer series on challenges in machine learning

Efficient Automated Deep Learning for Time Series Forecasting

Evaluating Generic Auto-ML Tools for Computational Pathology

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry

Automated Deep Learning for Load Forecasting


Check out the new game server:

Google Research Football: A Novel Reinforcement Learning Environment

Neighborhood Cognition Consistent Multi-Agent Reinforcement Learning

GCS: Graph-based Coordination Strategy for Multi-Agent Reinforcement Learning

Deep Reinforcement Learning

From Explicit Communication to Tacit Cooperation:A Novel Paradigm for Cooperative MARL

Learning to Collaborate by Grouping: a Consensus-oriented Strategy for Multi-agent Reinforcement Learning

Boosting Studies of Multi-Agent Reinforcement Learning on Google Research Football Environment: the Past, Present, and Future

Learning Multi-Agent Action Coordination via Electing First-Move Agent

Quantifying Zero-shot Coordination Capability with Behavior Preferring Partners

Soft Q Network


DBCSR: Distributed Block Compressed Sparse Row matrix library

The CECAM electronic structure library and the modular software development paradigm

Enabling particle applications for exascale computing platforms

The international journal of high performance computing applications

DBCSR: A Blocked Sparse Tensor Algebra Library

Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals

DBCSR: A Library for Dense Matrix Multiplications on Distributed GPU-Accelerated Systems


memcached development tree

Symbolic Partial-Order Execution for Testing Multi-Threaded Programs

Using FLOSS for Storing, Processing and Linking Corpus Data

Observations on Porting In-memory KV stores to Persistent Memory

Async-fork: Mitigating Query Latency Spikes Incurred by the Fork-based Snapshot Mechanism from the OS Level

Pub/Sub Message Brokers for GenAI

Fex: Assisted Identification of Domain Features from C Programs

Dagger: Accelerating RPCs in Cloud Microservices Through Tightly-Coupled Reconfigurable NICs

gym-saturation: Gymnasium Environments for Saturation Provers (System description)


[ICLR 2023 Spotlight] Vision Transformer Adapter for Dense Predictions

SceneDreamer: Unbounded 3D Scene Generation from 2D Image Collections

A General-Purpose Self-Supervised Model for Computational Pathology

An open dataset for intelligent recognition and classification of abnormal condition in longwall mining

Healthy Cities, A comprehensive dataset for environmental determinants of health in England cities

Champion Solution for the WSDM2023 Toloka VQA Challenge


Ewasm Design Overview and Specification

A Blockchain Platform for User Data Sharing Ensuring User Control and Incentives

User Data Sharing Frameworks: A Blockchain-Based Incentive Solution

An Empirical Study Into the Success of Listed Smart Contracts in Ethereum

A Survey on EOSIO Systems Security: Vulnerability, Attack, and Mitigation


A framework for the evaluation of autoregressive code generation language models.

SantaCoder: don't reach for the stars!

OctoPack: Instruction Tuning Code Large Language Models

RTLCoder: Outperforming GPT-3.5 in Design RTL Generation with Our Open-Source Dataset and Lightweight Solution

LeTI: Learning to Generate from Textual Interactions

WaveCoder: Widespread And Versatile Enhancement For Code Large Language Models By Instruction Tuning

Astraios: Parameter-Efficient Instruction Tuning Code Large Language Models

EXAONE 3.0 7.8B Instruction Tuned Language Model

CorDA: Context-Oriented Decomposition Adaptation of Large Language
  Models

Narrow Transformer: StarCoder-Based Java-LM For Desktop

Qiskit Code Assistant: Training LLMs for generating Quantum Computing Code


A lightweight parameter server interface

Parallel Distributed Logistic Regression for Vertical Federated Learning without Third-Party Coordinator

HET: Scaling out Huge Embedding Model Training via Cache-enabled Distributed Framework

MiCS: Near-linear Scaling for Training Gigantic Model on Public Cloud

Feature-Distributed SVRG for High-Dimensional Linear Classification

Enabling Fast and Flexible Distributed Deep Learning with Programmable Switches


:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.

Corruption Risk in Contracting Markets: A Network Science Perspective

(Almost) All of Entity Resolution

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)

Exploratory Data Analysis and Classification of a New Arabic Online Extremism Dataset

PsySafe: A Comprehensive Framework for Psychological-based Attack, Defense, and Evaluation of Multi-agent System Safety

Accelerating Column Generation via Flexible Dual Optimal Inequalities with Application to Entity Resolution

Integrating Historical Person Registers as Linked Open Data in the WarSampo Knowledge Graph

Semantic Systems : In the Era of Knowledge Graphs : 16th International Conference on Semantic Systems, SEMANTiCS 2020, Amsterdam, The Netherlands, September 7-10, 2020 : proceedings

Ground Truth Inference for Weakly Supervised Entity Matching

Do Communities in Developer Interaction Networks align with Subsystem Developer Teams? An Empirical Study of Open Source Systems


Open source eye tracking

Pupil: An Open Source Platform for Pervasive Eye Tracking and Mobile Gaze-based Interaction

DeepVOG: Open-source pupil segmentation and gaze estimation in neuroscience using deep learning

A new comprehensive eye-tracking test battery concurrently evaluating the Pupil Labs glasses and the EyeLink 1000

360-degree Video Gaze Behaviour: A Ground-Truth Data Set and a Classification Algorithm for Eye Movements

A Survey on Deep Learning Toolkits and Libraries for Intelligent User Interfaces

Difference in gaze control ability between low and high skill players of a real-time strategy game in esports

A Multi-Modal Gait Database of Natural Everyday-Walk in an Urban Environment

Do Smart Glasses Dream of Sentimental Visions?

Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

EyeNet: A Multi-Task Network for Off-Axis Eye Gaze Estimation and User Understanding

A Convolutional Neural Network for gaze preference detection: A potential tool for diagnostics of autism spectrum disorder in children


Bayesian Evolutionary Analysis Sampling Trees

Emerging Coxsackievirus A6 Causing Hand, Foot and Mouth Disease, Vietnam

Global radiation in a rare biosphere soil diatom

Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador

medRxiv : the preprint server for health sciences

Estimating effective population size changes from preferentially sampled genetic sequences

Phylogeographic analysis of human influenza A and B viruses in Myanmar, 2010–2015

A Variational Approach to Bayesian Phylogenetic Inference

The early SARS-CoV-2 epidemic in Senegal was driven by the local emergence of B.1.416 and the introduction of B.1.1.420 from Europe

Enhancing global preparedness during an ongoing pandemic from partial and noisy data


Automated auditing, performance metrics, and best practices for the web.

An Early Benchmark of Quality of Experience Between HTTP/2 and HTTP/3 using Lighthouse

Toward Using Package Centrality Trend to Identify Packages in Decline

Farsight: Fostering Responsible AI Awareness During AI Application Prototyping

Proceedings of the CHI Conference on Human Factors in Computing Systems

Implications of Edge Computing for Static Site Generation

Perceived Performance of Webpages In the Wild: Insights from Large-scale Crowdsourcing of Above-the-Fold QoE

FP-Fed: Privacy-Preserving Federated Detection of Browser Fingerprinting

Measuring Corporate Digital Divide with web scraping: Evidence from Italy

Chrowned by an Extension: Abusing the Chrome DevTools Protocol through the Debugger API


Genetic multiplexing of barcoded single cell RNA-seq

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

scds: computational annotation of doublets in single-cell RNA sequencing data

iMyoblasts for ex vivo and in vivo investigations of human myogenesis and disease modeling

Enabling out-of-clinic human immunity studies via single-cell profiling of capillary blood

Shared acute phase traits in effector and memory human CD8 T cells

Benchmarking UMI-based single cell RNA-sequencing preprocessing workflows


An Open Platform for National Electricity Market Data


HOTA (and other) evaluation metrics for Multi-Object Tracking (MOT).

Performance Measures and a Data Set for Multi-Target, Multi-Camera Tracking

HOTA: A Higher Order Metric for Evaluating Multi-object Tracking

International journal of computer vision

Video Instance Segmentation

SoccerNet-Tracking: Multiple Object Tracking Dataset and Benchmark in Soccer Videos

BURST: A Benchmark for Unifying Object Recognition, Segmentation and Tracking in Video

TarViS: A Unified Approach for Target-based Video Segmentation

The 8th AI City Challenge

LettuceTrack: Detection and tracking of lettuce for robotic precision spray in agriculture

Benchmarking 2D Multi-Object Detection and Tracking Algorithms in Autonomous Vehicle Driving Scenarios

High-Temporal-Resolution Object Detection and Tracking Using Images and Events


Apache Parquet Format

Pairtools: From sequencing data to chromosome contacts

SARS-CoV2 billion-compound docking

The Case For Alternative Web Archival Formats To Expedite The Data-To-Insight Cycle

ACM/IEEE Joint Conference on Digital Libraries

Extensible Data Skipping

ROOT I/O compression improvements for HEP analysis

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)

Columnar Formats for Schemaless LSM-based Document Stores

Protecting Sensitive Tabular Data in Hybrid Clouds


Emscripten: An LLVM-to-WebAssembly Compiler

Simplifying ARM Concurrency: Multicopy-Atomic Axiomatic and Operational Models for ARMv8

Symposium on Principles of Programming Languages

WebAL Comes of Age: A Review of the First 21 Years of Artificial Life on the Web

Superoptimization of WebAssembly bytecode

International Conference on the Art, Science and Engineering of Programming

SurfBraid: A concept tool for preparing and resource estimating quantum circuits protected by the surface code

Musical Score Following and Audio Alignment

Wasmizer: Curating WebAssembly-driven Projects on GitHub


Implementation A Style-Based Generator Architecture for Generative Adversarial Networks in PyTorch

The Geometry of Deep Generative Image Models and its Applications

Diagonal Attention and Style-based GAN for Content-Style Disentanglement in Image Generation and Translation

LT-GAN: Self-Supervised GAN with Latent Transformation Detection

Feature Unlearning for Pre-trained GANs and VAEs

A Benchmarking Initiative for Audio-Domain Music Generation Using the Freesound Loop Dataset

MineGAN++: Mining Generative Models for Efficient Knowledge Transfer to Limited Data Domains

Disentanglement Learning via Topology

Optimizing Intermediate Representations of Generative Models for Phase Retrieval


Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.

SimpleDS: A Simple Deep Reinforcement Learning Dialogue System

Deep-Spying: Spying using Smartwatch and Deep Learning

Front-end deep learning web apps development and deployment: a review

Applied intelligence (Dordrecht, Netherlands)

Bootstrapping incremental dialogue systems: using linguistic knowledge to learn from minimal data

CrossCheck: Rapid, Reproducible, and Interpretable Model Evaluation

Fabrik: An Online Collaborative Neural Network Editor

Using Open-Source Software for Business, Urban, and Other Applications of Deep Neural Networks, Machine Learning, and Data Analytics Tools

International Journal of Artificial Intelligence and Machine Learning


:triangular_ruler: Javascript Geometric Algebra Generator for Javascript, c++, c#, rust, python. (with operator overloading and algebraic literals) -

Course notes Geometric Algebra for Computer Graphics, SIGGRAPH 2019

Projective geometric algebra: A new framework for doing euclidean geometry

Exploring Novel Surface Representations via an Experimental Ray-Tracer in CGA


Treetracker is Greenstands open source Android app to track and verify reforestation efforts globally. NEW DEVELOPERS:  Please refer to the README for is issue milestones and topics!  https://github.com/Greenstand/treetracker-android/blob/master/README.md


Parallel computing with task scheduling

Wepy: A Flexible Software Framework for Simulating Rare Events with Weighted Ensemble Resampling

The Research Software Encyclopedia: A Community Framework to Define Research Software

Simmate: a framework for materials science

Optimizing High Throughput Inference on Graph Neural Networks at Shared Computing Facilities with the NVIDIA Triton Inference Server

POGEMA: A Benchmark Platform for Cooperative Multi-Agent Navigation


An Open Source Machine Learning Framework for Everyone

TensorFlow: A system for large-scale machine learning

Highly accurate protein structure prediction with AlphaFold

TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems

Quantization and Training of Neural Networks for Efficient Integer-Arithmetic-Only Inference

Theano: A Python framework for fast computation of mathematical expressions

Highly accurate protein structure prediction for the human proteome

Speech Commands: A Dataset for Limited-Vocabulary Speech Recognition

To prune, or not to prune: exploring the efficacy of pruning for model compression

Reconstructing cell cycle and disease progression using deep learning

Structured Sequence Modeling with Graph Convolutional Recurrent Networks


The ApolloScape Open Dataset for Autonomous Driving and its Application.

The ApolloScape Open Dataset for Autonomous Driving and Its Application

IEEE transactions on pattern analysis and machine intelligence

TrafficPredict: Trajectory Prediction for Heterogeneous Traffic-Agents

AADS: Augmented autonomous driving simulation using data-driven algorithms

A Survey on Automated Driving System Testing: Landscapes and Trends

DVI: Depth Guided Video Inpainting for Autonomous Driving

Unsupervised Learning of Depth from Monocular Videos Using 3D-2D Corresponding Constraints

CVPR 2019 WAD Challenge on Trajectory Prediction and 3D Perception


Fast, sensitive and accurate integration of single-cell data with Harmony

Fast, sensitive, and accurate integration of single cell data with Harmony

Mapping systemic lupus erythematosus heterogeneity at the single-cell level

A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease

Cardiac cell type–specific gene regulatory programs and disease risk association

SARS-CoV-2 Targets by the pscRNA Profiling of ACE2, TMPRSS2 and Furin Proteases

Distinct molecular and immune hallmarks of inflammatory arthritis induced by immune checkpoint inhibitors for cancer therapy

Computational methods for the integrative analysis of single-cell data

Bi-order multimodal integration of single-cell data

Spatiotemporal Characterization of Human Early Intervertebral Disc Formation at Single-Cell Resolution


Pretrained Pytorch face detection (MTCNN) and facial recognition (InceptionResnet) models

FaceNet: A Unified Embedding for Face Recognition and Clustering

Learning Face Representation from Scratch

Image Generators with Conditionally-Independent Pixel Synthesis

Deepfake Video Detection Using Convolutional Vision Transformer

Improving Transferability of Adversarial Patches on Face Recognition with Generative Models

Adversarial Sticker: A Stealthy Attack Method in the Physical World

Using latent space regression to analyze and leverage compositionality in GANs

Robust Multimodal Emotion Recognition from Conversation with Transformer-Based Crossmodality Fusion

The MuSe 2022 Multimodal Sentiment Analysis Challenge: Humor, Emotional Reactions, and Stress

Practical No-box Adversarial Attacks against DNNs


Spoon is a metaprogramming library to analyze and transform Java source code. :spoon: is made with :heart:, :beers: and :sparkles:. It parses source files to build a well-designed AST with powerful analysis and transformation API.

A comprehensive study of bloated dependencies in the Maven ecosystem

Embedding Java Classes with code2vec: Improvements from Variable Obfuscation

Research Commons (University of Waikato)

Coming: A Tool for Mining Change Pattern Instances from Git Commits

International Conference on Software Engineering

A comprehensive study of pseudo-tested methods

GitHub-OSS Fixit: Fixing bugs at scale in a Software Engineering Course

BreakBot: Analyzing the Impact of Breaking Changes to Assist Library Evolution

AI Chain on Large Language Model for Unsupervised Control Flow Graph Generation for Statically-Typed Partial Code

Predicting Flaky Tests Categories using Few-Shot Learning

Interacto: A Modern User Interaction Processing Model

IEEE Transactions on Software Engineering


TODS: An Automated Time-series Outlier Detection System

Detecting Spacecraft Anomalies Using LSTMs and Nonparametric Dynamic Thresholding

Data-centric Artificial Intelligence: A Survey

TODS: An Automated Time Series Outlier Detection System

A Survey on Time-Series Pre-Trained Models

TGAN-AD: Transformer-Based GAN for Anomaly Detection of Time Series Data

The Technological Emergence of AutoML: A Survey of Performant Software and Applications in the Context of Industry


开源人脸口罩检测模型和数据 Detect faces and determine whether people are wearing mask.

Real-Time Face Mask Detection Method Based on YOLOv3

RetinaFaceMask: A Single Stage Face Mask Detector for Assisting Control of the COVID-19 Pandemic

A Survey on Masked Facial Detection Methods and Datasets for Fighting Against COVID-19

IEEE Transactions on Artificial Intelligence

An Improved Lightweight YOLOv5 Model Based on Attention Mechanism for Face Mask Detection

Detection of a facemask in real-time using deep learning methods:
  Prevention of Covid 19

Mask or Non-Mask? Robust Face Mask Detector via Triplet-Consistency Representation Learning

A Survey on Computer Vision based Human Analysis in the COVID-19 Era

Real-time social distance measurement and face mask detection in public transportation systems during the COVID-19 pandemic and post-pandemic Era: Theoretical approach and case study in Italy Transportation Research Interdisciplinary Perspectives

Transportation research interdisciplinary perspectives

AI Based Monitoring of Different Risk Levels in COVID-19 Context

Comparative Analysis of Convolutional Neural Network Architectures for Real Time COVID-19 Facial Mask Detection


Open-source C++ implementation of the recently proposed online active set strategy

Nonlinear Model Predictive Velocity Control of a VTOL Tiltwing UAV

International Conference on Robotics and Automation

Model predictive force control in milling based on an ensemble Kalman filter

Fast Iterative Region Inflation for Computing Large 2-D/3-D Convex
  Regions of Obstacle-Free Space

Modelling, Analysis, and Control of OmniMorph: an Omnidirectional Morphing Multi-rotor UAV

A Flexible MATLAB/Simulink Simulator for Robotic Floating-base Systems in Contact with the Ground: Theoretical Background and Implementation Details

International Journal of Semantic Computing


The Fastest DNN Running Framework on Web Browser

Moving Deep Learning into Web Browser: How Far Can We Go?

Static inference meets deep learning

Proceedings of the 44th International Conference on Software Engineering

WebDNN: Fastest DNN Execution Framework on Web Browser

PROCEEDINGS OF THE 2017 ACM MULTIMEDIA CONFERENCE (MM'17)

HiTyper: A Hybrid Static Type Inference Framework with Neural Prediction.

Towards Understanding the Faults of JavaScript-Based Deep Learning Systems

Proceedings of the 37th IEEE/ACM International Conference on Automated Software Engineering


The Identity Overlay Network (ION) is a DID Method implementation using the Sidetree protocol atop Bitcoin

A Taxonomic Approach to Understanding Emerging Blockchain Identity Management Systems

A Tutorial on the Interoperability of Self-sovereign Identities

Digital identity architectures: comparing goals and vulnerabilities


Robust Speech Recognition via Large-Scale Weak Supervision

Gemini 1.5: Unlocking multimodal understanding across millions of tokens
  of context

Gemini: A Family of Highly Capable Multimodal Models

WhisperX: Time-Accurate Speech Transcription of Long-Form Audio

Seamless: Multilingual Expressive and Streaming Speech Translation

SeamlessM4T: Massively Multilingual & Multimodal Machine Translation

CodePlan: Repository-level Coding using LLMs and Planning

Transformers in Speech Processing: A Survey

The Singing Voice Conversion Challenge 2023

HyPoradise: An Open Baseline for Generative Speech Recognition with Large Language Models


The Multi-Agent Framework: First AI Software Company, Towards Natural Language Programming

MetaGPT: Meta Programming for A Multi-Agent Collaborative Framework

MetaTool Benchmark for Large Language Models: Deciding Whether to Use Tools and Which to Use

Generative Artificial Intelligence for Software Engineering - a Research Agenda

Data Interpreter: An LLM Agent For Data Science

An In-depth Survey of Large Language Model-based Artificial Intelligence Agents

Experimenting a New Programming Practice with LLMs

Examining User-Friendly and Open-Sourced Large GPT Models: A Survey on Language, Multimodal, and Scientific GPT Models

All Roads Lead to Rome: Unveiling the Trajectory of Recommender Systems
  Across the LLM Era


The Browser Exploitation Framework Project

Never Trust Your Victim: Weaponizing Vulnerabilities in Security Scanners

Eradicating Attacks on the Internal Network with Internal Network Policy

Open Source Solutions for Vulnerability Assessment: A Comparative Analysis


papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

How to capitalize on a priori contrasts in linear (mixed) models: A tutorial

An Excess of Positive Results: Comparing the Standard Psychology Literature With Registered Reports

Advances in Methods and Practices in Psychological Science

Data availability, reusability, and analytic reproducibility: evaluating the impact of a mandatory open data policy at the journal Cognition

Why the Cross-Lagged Panel Model Is Almost Never the Right Choice

Toward a Neurobiologically Plausible Model of Language-Related, Negative Event-Related Potentials

Personality Associations With Smartphone and Internet Use Disorder: A Comparison Study Including Links to Impulsivity and Social Anxiety

The impact of COVID‐19 on the cancer care of adolescents and young adults and their well‐being: Results from an online survey conducted in the early stages of the pandemic

Dark and bright patterns in cookie consent requests

Early language experience in a Papuan community

On the Statistical and Practical Limitations of Thurstonian IRT Models

Educational and psychological measurement


Evolutionary multi-objective optimization platform

Meta-Learning-Based Deep Reinforcement Learning for Multiobjective Optimization Problems

Improved SparseEA for sparse large-scale multi-objective optimization problems

Multi-Objective Hyperparameter Optimization in Machine Learning—An Overview

Decomposition in decision and objective space for multi-modal multi-objective optimization

Multi-agent Dynamic Algorithm Configuration

Preference incorporation into many-objective optimization: An Ant colony algorithm based on interval outranking

Reinforcement Learning-assisted Evolutionary Algorithm: A Survey and Research Opportunities

An effective and efficient evolutionary algorithm for many-objective optimization

Evolutionary Multiobjective Optimization with Endmember Priori Strategy for Large-Scale Hyperspectral Sparse Unmixing

A Novel Angular-Guided Particle Swarm Optimizer for Many-Objective Optimization Problems


:fire: 2D and 3D Face alignment library build using pytorch

How far are we from solving the 2D & 3D Face Alignment problem? (and a dataset of 230,000 3D facial landmarks)

International Conference on Computer Vision

Lips Don't Lie: A Generalisable and Robust Approach to Face Forgery Detection

Learning Spatial Attention for Face Super-Resolution

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

G3AN: Disentangling Appearance and Motion for Video Generation

Leveraging Real Talking Faces via Self-Supervision for Robust Forgery Detection

Two-Stage Convolutional Part Heatmap Regression for the 1st 3D Face Alignment in the Wild (3DFAW) Challenge

The 1st Challenge on Remote Physiological Signal Sensing (RePSS)

Neuron Structure Modeling for Generalizable Remote Physiological Measurement

3D-FM GAN: Towards 3D-Controllable Face Manipulation

SVTS: Scalable Video-to-Speech Synthesis


Deep learning software to decode EEG, ECG or MEG signals

EEGNet: a compact convolutional neural network for EEG-based brain–computer interfaces

Deep learning with convolutional neural networks for EEG decoding and visualization

An extended clinical EEG dataset with 15,300 automatically labelled recordings for pathology decoding

Amplifying Pathological Detection in EEG Signaling Pathways through Cross-Dataset Transfer Learning

Motor Imagery Decoding Using Ensemble Curriculum Learning and Collaborative Training

An overview of open source Deep Learning-based libraries for Neuroscience


Multi-resolution ocean general circulation model.

Abrupt Climate and Weather Changes Across Time Scales

Scalability and some optimization of the Finite-volumE Sea ice-Ocean Model, Version 2.0 (FESOM2)

Nudging allows direct evaluation of coupled climate models with in situ observations: a case study from the MOSAiC expedition

Simple algorithms to compute meridional overturning and barotropic streamfunctions on unstructured meshes

The Impact of Different Atmospheric CO2 Concentrations on Large Scale Miocene Temperature Signatures

The Parareal Algorithm Applied to the FESOM 2 Ocean Circulation Model

Considerable Uncertainty of Simulated Arctic Temperature Change in the Mid‐Holocene Due To Initial Ocean Perturbation


Fast genome analysis from unassembled short reads

Highly contiguous assemblies of 101 drosophilid genomes

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

Draft Genome Sequence for the Tree PathogenPhytophthora plurivora

Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome

DNA research : an international journal for rapid publication of reports on genes and genomes

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

Genomic Insights into High-Altitude Adaptation: A Comparative Analysis of Roscoea alpina and R. purpurea in the Himalayas

International journal of molecular sciences

Integrated global analysis in spider flowers illuminates features underlying the evolution and maintenance of C4 photosynthesis


ImageBind One Embedding Space to Bind Them All

ImageBind: One Embedding Space To Bind Them All

Intriguing Equivalence Structures of the Embedding Space of Vision
  Transformers

VidMuse: A Simple Video-to-Music Generation Framework with Long-Short-Term Modeling

Intriguing Differences Between Zero-Shot and Systematic Evaluations of
  Vision-Language Transformer Models

Discriminator-Guided Cooperative Diffusion for Joint Audio and Video
  Generation

Unaligning Everything: Or Aligning Any Text to Any Image in Multimodal
  Models


MetaDrive: Open-source driving simulator

MetaDrive: Composing Diverse Driving Scenarios for Generalizable Reinforcement Learning

Learning to Simulate Self-Driven Particles System with Coordinated Policy Optimization

ScenarioNet: Open-Source Platform for Large-Scale Traffic Scenario Simulation and Modeling

SafeDreamer: Safe Reinforcement Learning with World Models

SafeRL-Kit: Evaluating Efficient Reinforcement Learning Methods for Safe Autonomous Driving


LIEF - Library to Instrument Executable Formats (C++, Python, Rust)

MAB-Malware: A Reinforcement Learning Framework for Attacking Static Malware Classifiers

FirmwareDroid: Security Analysis of the Android Firmware EcoSystem


Persistent Memory Development Kit

Object-oriented recovery for non-volatile memory

Proceedings of the ACM on Programming Languages

The Parallel Persistent Memory Model

SPAA'18: PROCEEDINGS OF THE 30TH ACM SYMPOSIUM ON PARALLELISM IN ALGORITHMS AND ARCHITECTURES

Persistent Software Combining

Q-Selector-Based Prefetching Method for DRAM/NVM Hybrid Main Memory System

WITCHER : Detecting Crash Consistency Bugs in Non-volatile Memory
  Programs

PETRA: Persistent Transactional Non-blocking Linked Data Structures

ACM Transactions on Architecture and Code Optimization (TACO)

Puddles: Application-Independent Recovery and Location-Independent Data for Persistent Memory

Revisiting active object stores: Bringing data locality to the limit with NVM

Efficient Kernel Object Management for Tiered Memory Systems with KLOC

Arcadia: A Fast and Reliable Persistent Memory Replicated Log


Pretty heatmaps

SYK coordinates neuroprotective microglial responses in neurodegenerative disease

Mitofusins regulate lipid metabolism to mediate the development of lung fibrosis

Sci-fate characterizes the dynamics of gene expression in single cells

A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury

Targeting JNK pathway promotes human hematopoietic stem cell expansion

Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease

Comprehensive analyses reveal TKI-induced remodeling of the tumor immune microenvironment in EGFR/ALK-positive non-small-cell lung cancer

High-frequency head impact causes chronic synaptic adaptation and long-term cognitive impairment in mice

Transcriptomic encoding of sensorimotor transformation in the midbrain

OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data


Development repository for the CICE sea-ice model

Atmospheric sensitivity to marginal‐ice‐zone drag: Local and global responses

Quarterly Journal of the Royal Meteorological Society

The sensitivity of landfast sea ice to atmospheric forcing in single-column model simulations: a case study at Zhongshan Station, Antarctica


DESC Core Cosmology Library: cosmology routines with validated numerical accuracy

KiDS+VIKING-450: Cosmic shear tomography with optical and infrared data

A unified pseudo-Cℓ framework

Monthly notices of the Royal Astronomical Society

Core Cosmology Library: Precision Cosmological Predictions for LSST

The Astrophysical Journal Supplement Series

The Atacama Cosmology Telescope: A Catalog of >4000 Sunyaev-Zel'dovich Galaxy Clusters

The impact of baryons on the matter power spectrum from the Horizon-AGN cosmological hydrodynamical simulation

Monthly Notices of the Royal Astronomical Society

Probing the Fundamental Nature of Dark Matter with the Large Synoptic Survey Telescope

Tomographic galaxy clustering with the Subaru Hyper Suprime-Cam first year public data release

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)

The growth of density perturbations in the last ∼10 billion years from tomographic large-scale structure data

Erratum: Tomographic measurement of the intergalactic gas pressure through galaxy-tSZ cross-correlations

Joint constraints on cosmology and the impact of baryon feedback: Combining KiDS-1000 lensing with the thermal Sunyaev–Zeldovich effect from Planck and ACT


Implementation for <SphereFace: Deep Hypersphere Embedding for Face Recognition> in CVPR'17.

Face Recognition: Primates in the Wild

Real Masks and Spoof Faces: On the Masked Face Presentation Attack Detection

DocFace: Matching ID Document Photos to Selfies

DocFace+: ID Document to Selfie Matching

Racial Faces in-the-Wild: Reducing Racial Bias by Deep Unsupervised Domain Adaptation.

Recognizing Families In the Wild (RFIW): The 4th Edition

On the Capacity of Face Representation

The 5th Recognizing Families in the Wild Data Challenge: Predicting Kinship from Faces


HIP: C++ Heterogeneous-Compute Interface for Portability

MIOpen: An Open Source Library For Deep Learning Primitives

Preparing Ginkgo for AMD GPUs -- A Testimonial on Porting CUDA Code to HIP

Ginkgo -- A Math Library designed for Platform Portability

Exploring GPU Stream-Aware Message Passing using Triggered Operations

Celeritas: GPU-accelerated particle transport for detector simulation in High Energy Physics experiments

Portability: A Necessary Approach for Future Scientific Software

Optimizing GPU Cache Policies for MI Workloads

VkFFT-A Performant, Cross-Platform and Open-Source GPU FFT Library

Lattice QCD GPU Inverters on ROCm Platform

COX: CUDA on X86 by Exposing Warp-Level Functions to CPUs


free finite-difference time-domain (FDTD) software for electromagnetic simulations

High-performance hybrid time/frequency-domain topology optimization for large-scale photonics inverse design.

Characterizing the radio quiet region behind the lunar farside for low radio frequency experiments

Open-source software for electrical engineering applications requiring consideration of electrodynamics: elecode

A low cost and large-scale synthesis of 3D photonic crystal with SP2 lattice symmetry

Modeling lasers and saturable absorbers via multilevel atomic media in the Meep FDTD software: Theory and implementation.


Low-Cost Open Source Ventilator or PAPR

Leveraging open hardware to alleviate the burden of COVID-19 on global health systems

Pressure Optimized PowEred Respirator (PROPER): A miniaturized wearable cleanroom and biosafety system for aerially transmitted viral infections such as COVID-19

Overcoming supply disruptions during pandemics by utilizing found hardware for open source gentle ventilation


An Analysis Tool for Smart Contracts

ContractFuzzer: Fuzzing Smart Contracts for Vulnerability Detection

PROCEEDINGS OF THE 2018 33RD IEEE/ACM INTERNATIONAL CONFERENCE ON AUTOMTED SOFTWARE ENGINEERING (ASE' 18)

Finding The Greedy, Prodigal, and Suicidal Contracts at Scale

A Semantic Framework for the Security Analysis of Ethereum Smart Contracts

Empirical Review of Automated Analysis Tools on 47,587 Ethereum Smart Contracts

Zenodo (CERN European Organization for Nuclear Research)

Sereum: Protecting Existing Smart Contracts Against Re-Entrancy Attacks

The Art of The Scam: Demystifying Honeypots in Ethereum Smart Contracts

Security Analysis Methods on Ethereum Smart Contract Vulnerabilities: A Survey

Defining Smart Contract Defects on Ethereum

Scilla: a Smart Contract Intermediate-Level LAnguage

DefectChecker: Automated Smart Contract Defect Detection by Analyzing EVM Bytecode

IEEE Transactions on Software Engineering


StarCraft II Client - protocol definitions used to communicate with StarCraft II.

StarCraft II: A New Challenge for Reinforcement Learning

AlphaStar Unplugged: Large-Scale Offline Reinforcement Learning

Unsupervised Hebbian Learning on Point Sets in StarCraft II

Forecasting Evolution of Clusters in Game Agents with Hebbian Learning


A controls-oriented engineering wake model.

Design and Analysis of a Wake Steering Controller with Wind Direction Variability

Control-oriented model for secondary effects of wake steering

Results from a wake-steering experiment at a commercial wind plant: investigating the wind speed dependence of wake-steering performance

Controls-Oriented Model for Secondary Effects of Wake Steering

Wake steering optimization under uncertainty

Wind farm blockage effects: comparison of different engineering models

SCIENCE OF MAKING TORQUE FROM WIND (TORQUE 2020), PTS 1-5

Wind farm layout optimization with load constraints using surrogate modelling

Comparison of the Gaussian Wind Farm Model with Historical Data of Three Offshore Wind Farms

Evaluating Global Blockage engineering parametrizations with LES

Overview of FLORIS updates


Main operatorfabric program


Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Metagenomics next-generation sequencing tests take the stage in the diagnosis of lower respiratory tract infections

Exploring the Spatial-Temporal Microbiota of Compound Stomachs in a Pre-weaned Goat Model

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals

The Postmedieval Latvian Oral Microbiome in the Context of Modern Dental Calculus and Modern Dental Plaque Microbial Profiles

Metagenomic Insights Into the Microbial Communities of Inert and Oligotrophic Outdoor Pier Surfaces of a Coastal City

Mycobiome changes in the vitreous of post fever retinitis patients

Basalt-Hosted Microbial Communities in the Subsurface of the Young Volcanic Island of Surtsey, Iceland

Characterization of cerebrospinal fluid (CSF) microbiota from patients with CSF shunt infection and reinfection using high throughput sequencing of 16S ribosomal RNAgenes

Intraocular Viral Communities Associated With Post-fever Retinitis


Trinotate source code

Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes

Venomic, Transcriptomic, and Bioactivity Analyses of Pamphobeteus verdolaga Venom Reveal Complex Disulfide-Rich Peptides That Modulate Calcium Channels

De novo assembly and transcriptome characterization: Novel insights into the mechanisms of primary ovarian cancer in Microtus fortis

Interleukin-1 Ligands and Receptors in Lumpfish (Cyclopterus lumpus L.): Molecular Characterization, Phylogeny, Gene Expression, and Transcriptome Analyses

Subgenome dominance shapes novel gene evolution in the decaploid pitcher plantNepenthes gracilis

Leaf Transcriptome Assembly of Protium copal (Burseraceae) and Annotation of Terpene Biosynthetic Genes

A first draft genome of holm oak (Quercus ilex subsp. ballota), the most representative species of the Mediterranean forest and the Spanish agrosylvopastoral ecosystem “dehesa”

The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees

Integrating Metabolomics and Transcriptomics to Unveil Atisine Biosynthesis in Aconitum gymnandrum Maxim

Comparative Characterization of Immune Response in Sheep with Caseous Lymphadenitis through Analysis of the Whole Blood Transcriptome

Animals : an open access journal from MDPI


The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.

The emergence of modern zoogeographic regions in Asia examined through climate–dental trait association patterns


Responsible AI Toolbox is a suite of tools providing model and data exploration and assessment user interfaces and libraries that enable a better understanding of AI systems. These interfaces and libraries empower developers and stakeholders of AI systems to develop and monitor AI more responsibly, and take better data-driven actions.

Towards a multi-stakeholder value-based assessment framework for algorithmic systems

Conference on Fairness, Accountability and Transparency

Ethically Responsible Machine Learning in Fintech

A Review of the Role of Causality in Developing Trustworthy AI Systems

A Comprehensive Review on Financial Explainable AI

Phi-3 Safety Post-Training: Aligning Language Models with a "Break-Fix" Cycle


A benchmarking framework for the Julia language

Robust benchmarking in noisy environments

Uncertainty propagation with functionally correlated quantities

Tensors.jl — Tensor Computations in Julia

The Rank-Reduced Kalman Filter: Approximate Dynamical-Low-Rank Filtering In High Dimensions

Generalized Sampling in Julia

N-Step-Ahead Optimal Control of a Compartmental Model of COVID-19

Journal of Control, Automation and Electrical Systems

Efficient generation of random rotation matrices in four dimensions

Approximate Douglas–Rachford algorithm for two-sets convex feasibility problems

Wireless Network Scheduling With Discrete Propagation Delays: Theorems and Algorithms

Learned 1-D passive scalar advection to accelerate chemical transport modeling: a case study with GEOS-FP horizontal wind fields


This is a language detection library implemented in plain Java. (aliases: language identification, language guessing)

We Value Your Privacy ... Now Take Some Cookies: Measuring the GDPR's Impact on Web Privacy

Proceedings 2019 Network and Distributed System Security Symposium

Automatic Language Identification in Texts: A Survey

Collective Emotions and Social Resilience in the Digital Traces After a Terrorist Attack

Towards a Question Answering System over the Semantic Web

TwiSty: A Multilingual Twitter Stylometry Corpus for Gender and Personality Profiling

Towards Leaving No Indic Language Behind: Building Monolingual Corpora, Benchmark and Models for Indic Languages

One-To-Many Multilingual End-to-end Speech Translation

WikiBERT models: deep transfer learning for many languages

EstBERT: A Pretrained Language-Specific BERT for Estonian

Are You Charlie or Ahmed? Cultural Pluralism in Charlie Hebdo Response on Twitter


Repo for LaWGPT, Chinese-Llama tuned with Chinese Legal knowledge. 基于中文法律知识的大语言模型

Large Language Models in Law: A Survey

LawBench: Benchmarking Legal Knowledge of Large Language Models

PanGu-π: Enhancing Language Model Architectures via Nonlinearity Compensation

LAiW: A Chinese Legal Large Language Models Benchmark (A Technical Report)

A Survey on Large Language Models for Critical Societal Domains:
  Finance, Healthcare, and Law

AviationGPT: A Large Language Model for the Aviation Domain

Reformulating Domain Adaptation of Large Language Models as Adapt-Retrieve-Revise

LawGPT: A Chinese Legal Knowledge-Enhanced Large Language Model

Role Prompting Guided Domain Adaptation with General Capability Preserve
  for Large Language Models

SimuCourt: Building Judicial Decision-Making Agents with Real-world
  Judgement Documents


DeepSeek Coder: Let the Code Write Itself

DeepSeek-Coder: When the Large Language Model Meets Programming -- The Rise of Code Intelligence

A Survey on Large Language Models for Software Engineering

Enhancing LLM-based Test Generation for Hard-to-Cover Branches via
  Program Analysis

ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code

On Evaluating the Efficiency of Source Code Generated by LLMs

Automatic Programming: Large Language Models and Beyond

On the Evaluation of Large Language Models in Unit Test Generation

MR-Adopt: Automatic Deduction of Input Transformation Function for Metamorphic Testing


Advanced Normalization Tools (ANTs)

The Insight ToolKit image registration framework

A large-scale comparison of cortical thickness and volume methods for measuring Alzheimer's disease severity

Whole-central nervous system functional imaging in larval Drosophila

SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images

A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region

Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network

T1-weighted in vivo human whole brain MRI dataset with an ultrahigh isotropic resolution of 250 μm

A probabilistic atlas of the basal ganglia using 7 T MRI

The pediatric template of brain perfusion

Quantitative neuroimaging measures of myelin in the healthy brain and in multiple sclerosis


HTTP load testing tool and library. It's over 9000!

Sizeless: Predicting the optimal size of serverless functions

Open-source RANs in Practice: an Over-The-Air Deployment for 5G MEC

European Conference on Networks and Communications

Data Fusion of Observability Signals for Assisting Orchestration of Distributed Applications

Intrusion Survivability for Commodity Operating Systems

A Software-Defined Networking Solution for Interconnecting Network Functions in Service-Based Architectures

LinGBM: A Performance Benchmark for Approaches to Build GraphQL Servers (Extended Version)

Nirdizati: an Advanced Predictive Process Monitoring Toolkit


[ECCV2024] Video Foundation Models & Data for Multimodal Understanding

InternVideo: General Video Foundation Models via Generative and Discriminative Learning

InternVid: A Large-scale Video-Text Dataset for Multimodal Understanding and Generation

InternVideo2: Scaling Foundation Models for Multimodal Video Understanding

Language Reward Modulation for Pretraining Reinforcement Learning

Enhancing Video-Language Representations with Structural Spatio-Temporal Alignment

IEEE transactions on pattern analysis and machine intelligence

Harvest Video Foundation Models via Efficient Post-Pretraining

VideoEval: Comprehensive Benchmark Suite for Low-Cost Evaluation of
  Video Foundation Model

Event-Content-Oriented Dialogue Generation in Short Video

North American Chapter of the Association for Computational Linguistics


Scalable fuzzing infrastructure.

An Empirical Study of OSS-Fuzz Bugs

Learning Discrete Energy-based Models via Auxiliary-variable Local Exploration

Fuzzing Class Specifications

Multiple Targets Directed Greybox Fuzzing

Finding Bug-Inducing Program Environments

BACKRUNNER: Mitigating Smart Contract Attacks in the Real World


Pythonic stellar model grid access; easy MCMC fitting of stellar properties

A resonant chain of four transiting, sub-Neptune planets

The California-Kepler Survey. II. Precise Physical Properties of 2025 Kepler Planets and Their Host Stars

Stellar and planetary properties of K2 campaign 1 candidates and validation of 17 planets, including a planet receiving Earth-like insolation

Inferring the age of the universe with globular clusters

Journal of Cosmology and Astroparticle Physics

Absence of a Metallicity Effect for Ultra-short-period Planets

Spectroscopic Parameters and atmosphEric ChemIstriEs of Stars (SPECIES)

An exomoon survey of 70 cool giant exoplanets and the new candidate Kepler-1708 b-i

KEPLER-108: A MUTUALLY INCLINED GIANT PLANET SYSTEM

A Noninteracting Galactic Black Hole Candidate in a Binary System with a Main-sequence Star

An Ultra Metal-poor Star Near the Hydrogen-burning Limit


A C++ Background Subtraction Library with wrappers for Python, MATLAB, Java and GUI on QT

Video Processing From Electro-Optical Sensors for Object Detection and Tracking in a Maritime Environment: A Survey

Background Subtraction in Real Applications: Challenges, Current Models and Future Directions

Real-Time and Accurate Drone Detection in a Video with a Static Background

How Far Can You Get By Combining Change Detection Algorithms?

Small Moving Vehicle Detection in a Satellite Video of an Urban Area

Object Detection using Image Processing

Unsupervised Object Learning via Common Fate

Background-Subtraction Algorithm Optimization for Home Camera-Based Night-Vision Fall Detectors

Underwater Pipeline Oil Spill Detection Based on Structure of Root and Branch Cells

Journal of Marine Science and Engineering

Review on Real Time Background Extraction: Models, Applications, Environments, Challenges and Evaluation Approaches

International Journal of Online and Biomedical Engineering (iJOE)


Massively parallel rigidbody physics simulation on accelerator hardware.

Isaac Gym: High Performance GPU-Based Physics Simulation For Robot Learning

Brax -- A Differentiable Physics Engine for Large Scale Rigid Body Simulation

Transferring Dexterous Manipulation from GPU Simulation to a Remote Real-World TriFinger

Grasp'D: Differentiable Contact-rich Grasp Synthesis for Multi-fingered Hands

EvoJAX: Hardware-Accelerated Neuroevolution

Proceedings of the Genetic and Evolutionary Computation Conference Companion

VMAS: A Vectorized Multi-Agent Simulator for Collective Robot Learning

TorchRL: A data-driven decision-making library for PyTorch

Benchmarking Offline Reinforcement Learning on Real-Robot Hardware

Blocks Assemble! Learning to Assemble with Large-Scale Structured Reinforcement Learning

JaxMARL: Multi-Agent RL Environments in JAX


NUOPC Community Mediator for Earth Prediction Systems


Image-to-image translation with conditional adversarial nets

Image-to-Image Translation with Conditional Adversarial Networks

Shift-Net: Image Inpainting via Deep Feature Rearrangement

UV-GAN: Adversarial Facial UV Map Completion for Pose-invariant Face Recognition

Random Sampling for Fast Face Sketch Synthesis

Radar-on-Lidar: metric radar localization on prior lidar maps

Scene Compliant Trajectory Forecast With Agent-Centric Spatio-Temporal Grids

River segmentation for flood monitoring

SUSAN: Segment Unannotated image Structure using Adversarial Network

CSGAN: Cyclic-Synthesized Generative Adversarial Networks for Image-to-Image Transformation

SANTIS: Sampling-Augmented Neural neTwork with Incoherent Structure for MR image reconstruction


Functional tensors for probabilistic programming

Delayed Sampling and Automatic Rao-Blackwellization of Probabilistic Programs

Functional Tensors for Probabilistic Programming

Autoconj: Recognizing and Exploiting Conjugacy Without a Domain-Specific Language

Variationally Inferred Sampling through a Refined Bound

Variationally Inferred Sampling Through a Refined Bound for Probabilistic Programs


displays multiple genomic sequences in the form of a tube map

A new era of long-read sequencing for cancer genomics

MoMI-G: modular multi-scale integrated genome graph browser

Fully-sensitive seed finding in sequence graphs using a hybrid index

Describing the Local Structure of Sequence Graphs


Aliro: AI-Driven Data Science

A System for Accessible Artificial Intelligence

Evaluating recommender systems for AI-driven biomedical informatics

Aliro: an automated machine learning tool leveraging large language models


Browser extension that automatically fills out cookie popups based on your preferences

Dark Patterns after the GDPR: Scraping Consent Pop-ups and Demonstrating their Influence

PROCEEDINGS OF THE 2020 CHI CONFERENCE ON HUMAN FACTORS IN COMPUTING SYSTEMS (CHI'20)

Circumvention by design -- dark patterns in cookie consents for online news outlets

Are cookie banners indeed compliant with the law

The Internet with Privacy Policies: Measuring The Web Upon Consent


JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

HuggingGPT: Solving AI Tasks with ChatGPT and its Friends in Hugging Face

CodePlan: Repository-level Coding using LLMs and Planning

EASYTOOL: Enhancing LLM-based Agents with Concise Tool Instruction

TaskBench: Benchmarking Large Language Models for Task Automation

TaskWeaver: A Code-First Agent Framework


[ICML 2024] Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Model

Training data-efficient image transformers & distillation through attention

Mamba: Linear-Time Sequence Modeling with Selective State Spaces

MambaLRP: Explaining Selective State Space Sequence Models

Mamba meets crack segmentation


Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.

ACCESS-OM2 v1.0: a global ocean–sea ice model at three resolutions

Recent reduced abyssal overturning and ventilation in the Australian Antarctic Basin

Drivers and distribution of global ocean heat uptake over the last half century

Persistence and material coherence of a mesoscale ocean eddy

Weddell Sea Control of Ocean Temperature Variability on the Western Antarctic Peninsula

Study of Phytoplankton Biomass and Environmental Drivers in and around the Ross Sea Marine Protected Area


Stubby is the name given to a mode of using getdns which enables it to act as a local DNS Privacy stub resolver (using DNS-over-TLS).

Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS

Comparing the Effects of DNS, DoT, and DoH on Web Performance

WEB CONFERENCE 2020: PROCEEDINGS OF THE WORLD WIDE WEB CONFERENCE (WWW 2020)

Can Encrypted DNS Be Fast?

Passive and Active Network Measurement Conference


CLI and Rust libraries for low-level manipulation of WebAssembly modules

WASMixer: Binary Obfuscation for WebAssembly

WASM-MUTATE: Fast and Effective Binary Diversification for WebAssembly


Typed interactions with the GitHub API v3

VulBERTa: Simplified Source Code Pre-Training for Vulnerability Detection

Software engineering for quantum programming: How far are we?

SourceFinder: Finding Malware Source-Code from Publicly Available Repositories

Understanding Performance Problems in Deep Learning Systems

Behavior Trees and State Machines in Robotics Applications

An efficient and scalable search engine for models

DeepIaC: Deep Learning-Based Linguistic Anti-pattern Detection in IaC

Replication package for article: Behavior Trees in Action: A Study of Robotics Applications

On Wasted Contributions: Understanding the Dynamics of Contributor-Abandoned Pull Requests–A Mixed-Methods Study of 10 Large Open-Source Projects


Graphormer is a general-purpose deep learning backbone for molecular modeling.

Do Transformers Really Perform Bad for Graph Representation?

Meta-Transformer: A Unified Framework for Multimodal Learning

Benchmarking Graphormer on Large-Scale Molecular Modeling Datasets

First Place Solution of KDD Cup 2021 & OGB Large-Scale Challenge Graph Prediction Track

G-Adapter: Towards Structure-Aware Parameter-Efficient Transfer Learning for Graph Transformer Networks

RetroRanker: leveraging reaction changes to improve retrosynthesis prediction through re-ranking

Lo-Hi: Practical ML Drug Discovery Benchmark

Stepping Back to SMILES Transformers for Fast Molecular Representation Inference

Substructure-Atom Cross Attention for Molecular Representation Learning

Gradformer: Graph Transformer with Exponential Decay


PyTorch based Probabilistic Time Series forecasting framework based on GluonTS backend

Autoregressive Denoising Diffusion Models for Multivariate Probabilistic Time Series Forecasting

Multivariate Probabilistic Time Series Forecasting via Conditioned Normalizing Flows

TACTiS: Transformer-Attentional Copulas for Time Series

Probabilistic Time Series Forecasting with Implicit Quantile Networks

MG-TSD: Multi-Granularity Time Series Diffusion Models with Guided
  Learning Process

DynaConF: Dynamic Forecasting of Non-Stationary Time-Series

SpecSTG: A Fast Spectral Diffusion Framework for Probabilistic Spatio-Temporal Traffic Forecasting


[CVPR 2016] Unsupervised Feature Learning by Image Inpainting using GANs

Context Encoders: Feature Learning by Inpainting

Deep Depth Completion of a Single RGB-D Image

Variational Autoencoder with Arbitrary Conditioning

On-Demand Learning for Deep Image Restoration

Exploiting the Potential of Standard Convolutional Autoencoders for Image Restoration by Evolutionary Search

What Do Users Ask in Open-Source AI Repositories? An Empirical Study of GitHub Issues