CARLA: A Python Library to Benchmark Algorithmic Recourse and Counterfactual Explanation Algorithms

Counterfactual Explanations without Opening the Black Box: Automated
  Decisions and the GDPR

Explaining Machine Learning Classifiers through Diverse Counterfactual Explanations

Proceedings of the 2020 Conference on Fairness, Accountability, and Transparency

Actionable Recourse in Linear Classification

Proceedings of the Conference on Fairness, Accountability, and Transparency

FACE: Feasible and Actionable Counterfactual Explanations

PROCEEDINGS OF THE 3RD AAAI/ACM CONFERENCE ON AI, ETHICS, AND SOCIETY AIES 2020

Towards Realistic Individual Recourse and Actionable Explanations in Black-Box Decision Making Systems

Learning Model-Agnostic Counterfactual Explanations for Tabular Data

Inverse Classification for Comparison-based Interpretability in Machine Learning

Getting a CLUE: A Method for Explaining Uncertainty Estimates

CEnt: An Entropy-based Model-agnostic Explainability Framework to
  Contrast Classifiers' Decisions


This is Nbody6++GPU, an N-body star cluster simulation code, maintained by Rainer Spurzem and team.

The impact of stellar evolution on rotating star clusters: the gravothermal-gravogyro catastrophe and the formation of a bar of black holes

Monthly notices of the Royal Astronomical Society

The Dragon-II simulations -- II. Formation mechanisms, mass, and spin of
  intermediate-mass black holes in star clusters with up to 1 million stars

Influence of planets on debris disks in star clusters I: the 50 AU
  Jupiter

The Dragon-II simulations -- III. Compact binary mergers in clusters
  with up to 1 million stars: mass, spin, eccentricity, merger rate and pair
  instability supernovae rate


An application to remove PCR duplicates from high throughput sequencing runs.

Super deduper, fast PCR duplicate detection in fastq files

International Conference on Bioinformatics

Subtyping analysis reveals new variants and accelerated evolution of Clostridioides difficile toxin B

Genomic basis of homoploid hybrid speciation within chestnut trees

The genomics of rapid climatic adaptation and parallel evolution in North American house mice

A Comprehensive Multi-Omic Approach Reveals a Relatively Simple Venom in a Diet Generalist, the Northern Short-Tailed Shrew, Blarina brevicauda

Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine mice


C++/python library for simulating FRB's and pulsars

The First CHIME/FRB Fast Radio Burst Catalog

The Astrophysical journal. Supplement series/Astrophysical journal. Supplement series

A bright, high rotation-measure FRB that skewers the M33 halo

Monthly Notices of the Royal Astronomical Society

An Injection System for the CHIME/FRB Experiment

Flux Calibration of CHIME/FRB Intensity Data

A CHIME/FRB Study of Burst Rate and Morphological Evolution of the Periodically Repeating FRB 20180916B


Models and optimizes capacity & dispatch of electricity supply systems, off-grid or connected to a (weak) central grid


Soft Active Matter on Surfaces

Active Vertex Model for Cell-Resolution Description of Epithelial Tissue
  Mechanics

Dense active matter model of motion patterns in confluent cell monolayers

Tracking collective cell motion by topological data analysis

Coordinated tractions increase the size of a collectively moving pack in a cell monolayer

Discriminating between individual-based models of collective cell motion
  in a benchmark flow geometry using standardised spatiotemporal patterns

Coarse-graining the vertex model and its response to shear.


Continuum modelling for electrochemical devices.


Bifacial PV View Factor model for system performance calculation

bifacial_radiance: a python package for modeling bifacial solar photovoltaic systems


custom resolver

Environmental drivers of under-ice phytoplankton bloom dynamics in the Arctic Ocean

Bloom termination of the toxic dinoflagellate Alexandrium catenella: Vertical migration behavior, sediment infiltration, and benthic cyst yield

Limnology and oceanography/The l & o on cd-rom

Green Edge ice camp campaigns: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom

Assessment of holographic microscopy for quantifying marine particle size and concentration

Shifts in Phytoplankton Community Structure Across an Anticyclonic Eddy Revealed From High Spectral Resolution Lidar Scattering Measurements

Plankton Imagery Data Inform Satellite‐Based Estimates of Diatom Carbon

Characterizing coastal phytoplankton seasonal succession patterns on the West Antarctic Peninsula

Length, width, shape regularity, and chain structure: time series analysis of phytoplankton morphology from imagery

Imaging Technologies Build Capacity and Accessibility in Phytoplankton Species Identification Expertise for Research and Monitoring: Lessons Learned During the COVID-19 Pandemic

Embedded System to Detect, Track and Classify Plankton Using a Lensless Video Microscope.


Robust, flexible and resource-efficient pipelines using Go and the commandline

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

Predicting Off-Target Binding Profiles With Confidence Using Conformal Prediction

Building Domain-Specific Machine Learning Workflows: A Conceptual Framework for the State-of-the-Practice


SKIRT version 9 -- advanced radiative transfer in dusty systems

SKIRT 9: Redesigning an advanced dust radiative transfer code to allow kinematics, line transfer and polarization by aligned dust grains

High-resolution synthetic UV-submm images for Milky Way-mass simulated galaxies from the ARTEMIS project

sígame v3: Gas Fragmentation in Postprocessing of Cosmological Simulations for More Accurate Infrared Line Emission Modeling

Effects of Spatial Discretization in Lyα Line Radiation Transfer Simulations

X-ray radiative transfer in full 3D with SKIRT


A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

High-order epistasis shapes evolutionary trajectories

Molecular ensembles make evolution unpredictable

Proceedings of the National Academy of Sciences of the United States of America

Uninterpretable interactions: epistasis as uncertainty

Master regulators of biological systems in higher dimensions

Master regulators of evolution and the microbiome in higher dimensions


structural variant database software

From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability

Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements

Loqusdb: added value of an observations database of local genomic variation

Mosaic Deletions of Known Genes Explain Skeletal Dysplasias With High and Low Bone Mass


VNN Neural Network Verification Competition 2021

The Second International Verification of Neural Networks Competition (VNN-COMP 2021): Summary and Results

Efficient Neural Network Analysis with Sum-of-Infeasibilities

The Third International Verification of Neural Networks Competition
  (VNN-COMP 2022): Summary and Results

Toward Certified Robustness Against Real-World Distribution Shifts

CEG4N: Counter-Example Guided Neural Network Quantization Refinement


Official codebase used to develop Vision Transformer, SigLIP, MLP-Mixer, LiT and more.

Scaling Vision Transformers

How to train your ViT? Data, Augmentation, and Regularization in Vision
  Transformers

PaLI: A Jointly-Scaled Multilingual Language-Image Model

LiT: Zero-Shot Transfer with Locked-image text Tuning

Knowledge distillation: A good teacher is patient and consistent

Sigmoid Loss for Language Image Pre-Training

UViM: A Unified Modeling Approach for Vision with Learned Guiding Codes

FlexiViT: One Model for All Patch Sizes

CLIPPO: Image-and-Language Understanding from Pixels Only

Tuning computer vision models with task rewards


In silico prediction of E. coli serotype

ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data

Molecular Characterization of Extended-Spectrum β-Lactamase–Producing Escherichia coli and Klebsiella pneumoniae Among the Pediatric Population in Qatar

Evolutionary Dynamics Based on Comparative Genomics of Pathogenic Escherichia coli Lineages Harboring Polyketide Synthase (pks) Island

Use of Genomics to Investigate Historical Importation of Shiga Toxin–Producing Escherichia coli Serogroup O26 and Nontoxigenic Variants into New Zealand

Development of a multi-locus typing scheme for an Enterobacteriaceae linear plasmid that mediates inter-species transfer of flagella

Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada

Diversity of blaCTX-M-1-carrying plasmids recovered from Escherichia coli isolated from Canadian domestic animals

Genomic Epidemiology and Antimicrobial Susceptibility Profile of Enterotoxigenic Escherichia coli From Outpatients With Diarrhea in Shenzhen, China, 2015–2020

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

Comparative Genomic Analyses of Escherichia coli from a Meat Processing Environment in Relation to Their Biofilm Formation and Persistence


GAP Benchmark Suite

The GAP Benchmark Suite

SecDDR: Enabling Low-Cost Secure Memories by Protecting the DDR Interface

Performance Characterization of AutoNUMA Memory Tiering on Graph Analytics

Zenodo (CERN European Organization for Nuclear Research)


Produces persistent, respawning "super" cookies in a browser, abusing over a dozen techniques. Its goal is to identify users after they've removed standard cookies and other privacy data such as Flash cookies (LSOs), HTML5 storage, SilverLight storage, and others.

Web Runner 2049: Evaluating Third-Party Anti-bot Services

Mobile IMUs Reveal Driver's Identity From Vehicle Turns

Taming The Shape Shifter: Detecting Anti-fingerprinting Browsers


:bullettrain_front: Fast orthogonal polynomial transforms :surfer:

Fast algorithms using orthogonal polynomials

Fast and backward stable transforms between spherical harmonic expansions and bivariate Fourier series

A sparse spectral method on triangles

Polynomial and rational measure modifications of orthogonal polynomials
  via infinite-dimensional banded matrix factorizations

A fast and accurate algorithm for spherical harmonic analysis on HEALPix grids with applications to the cosmic microwave background radiation

Fast associated classical orthogonal polynomial transforms


A single-cell survey of Drosophila blood

Fast and precise single-cell data analysis using a hierarchical autoencoder

Human ALS/FTD brain organoid slice cultures display distinct early astrocyte and targetable neuronal pathology

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

Single-cell profiling reveals pathogenic role and differentiation trajectory of granzyme K+CD8+ T cells in primary Sjögren’s syndrome

Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer

Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages

Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis

Multi-regional characterisation of renal cell carcinoma and microenvironment at single cell resolution

Resource: A Cellular Developmental Taxonomy of the Bone Marrow Mesenchymal Stem Cell Population in Mice


Simplified Transfer Learning for Chest Radiography Models Using Less Data

Foundation Ark: Accruing and Reusing Knowledge for Superior and Robust Performance

MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION, MICCAI 2023, PT I


Compact NUMA-Aware Locks

BRAVO -- Biased Locking for Reader-Writer Locks

Isolate First, Then Share: a New OS Architecture for Datacenter Computing


Community Water Model (CWatM) is a hydrological model simulating the water cycle daily at global and local levels, historically and into the future, maintained by IIASA’s Water Security group

Low flow sensitivity to water withdrawals in Central and Southwestern Europe under 2 K global warming


Two time-scale update rule for training GANs

GANs Trained by a Two Time-Scale Update Rule Converge to a Local Nash Equilibrium

Generative Modeling by Estimating Gradients of the Data Distribution

Mode Seeking Generative Adversarial Networks for Diverse Image Synthesis

How good is my GAN?

TransGAN: Two Pure Transformers Can Make One Strong GAN, and That Can Scale Up

A U-Net Based Discriminator for Generative Adversarial Networks

COCO-GAN: Generation by Parts via Conditional Coordinating

ContraGAN: Contrastive Learning for Conditional Image Generation

Reducing Noise in GAN Training with Variance Reduced Extragradient

VAEBM: A Symbiosis between Variational Autoencoders and Energy-based
  Models


Bamboo see https://github.com/cornellblockchain/bamboo

A Survey on Ethereum Systems Security: Vulnerabilities, Attacks and
  Defenses

Scilla: a Smart Contract Intermediate-Level LAnguage

Safer smart contract programming with Scilla

Proceedings of the ACM on programming languages

A Generalized Formal Semantic Framework for Smart Contracts

Mandala: A Smart Contract Programming Language.

Inferring Needless Write Memory Accesses on Ethereum Bytecode (Extended
  Version)


A python utility library for interacting with NASA JPL's PO.DAAC


Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States

The D614G mutations in the SARS-CoV-2 spike protein: Implications for viral infectivity, disease severity and vaccine design

Biochemical and biophysical research communications

Chest imaging representing a COVID-19 positive rural U.S. population

Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia

Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology

medRxiv : the preprint server for health sciences

Characterization of the Immune Resistance of Severe Acute Respiratory Syndrome Coronavirus 2 Mu Variant and the Robust Immunity Induced by Mu Infection

The journal of infectious diseases (Online. University of Chicago Press)/The Journal of infectious diseases

Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States

Genomic epidemiology of COVID-19 in care homes in the east of England

Genome sequencing of the first SARS-CoV-2 reported from patients with COVID-19 in Ecuador


LoFreq Star: Sensitive variant calling from sequencing data

Variant profiling of evolving prokaryotic populations

Emergence of a Reassortant 2.3.4.4b Highly Pathogenic H5N1 Avian Influenza Virus Containing H9N2 PA Gene in Burkina Faso, West Africa, in 2021

Evolutionary Dynamics of H5 Highly Pathogenic Avian Influenza Viruses (Clade 2.3.4.4B) Circulating in Bulgaria in 2019–2021

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

Identification of Dobrava-Belgrade Virus in Apodemus flavicollis from North-Eastern Italy during Enhanced Mortality

Carnivore protoparvovirus 1 (CPV-2 and FPV) Circulating in Wild Carnivores and in Puppies Illegally Imported into North-Eastern Italy

Emergence and Persistent Circulation of Highly Pathogenic Avian Influenza Virus A (H5N8) in Kosovo, May 2021–May 2022


PyTorch - FID calculation with proper image resizing and quantization steps [CVPR 2022]

On Aliased Resizing and Surprising Subtleties in GAN Evaluation

Pros and Cons of GAN Evaluation Measures: New Developments

Generative Novel View Synthesis with 3D-Aware Diffusion Models

Erasing Concepts from Diffusion Models

Soft Truncation: A Universal Training Technique of Score-based Diffusion
  Model for High Precision Score Estimation

ATISS: Autoregressive Transformers for Indoor Scene Synthesis

Consistent View Synthesis with Pose-Guided Diffusion Models

I^2SB: Image-to-Image Schrödinger Bridge

GibbsDDRM: A Partially Collapsed Gibbs Sampler for Solving Blind Inverse
  Problems with Denoising Diffusion Restoration

Rickrolling the Artist: Injecting Backdoors into Text Encoders for Text-to-Image Synthesis


A neuroscience library for Python, intended to complement the existing nibabel library.

Bayesian analysis of retinotopic maps

Linking individual differences in human primary visual cortex to contrast sensitivity around the visual field

Cross-dataset reproducibility of human retinotopic maps

Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 T

Variability of the Surface Area of the V1, V2, and V3 Maps in a Large Sample of Human Observers

The journal of neuroscience/The Journal of neuroscience

White matter alterations in glaucoma and monocular blindness differ outside the visual system

Structural changes to primary visual cortex in the congenital absence of cone input in achromatopsia

Reproducible protocol to obtain and measure first-order relay human thalamic white-matter tracts

The many layers of BOLD. The effect of hypercapnic and hyperoxic stimuli on macro- and micro-vascular compartments quantified by CVR, M, and CBV across cortical depth

Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Linking individual differences in human V1 to perception around the visual field


Vector (and Scalar) Quantization, in Pytorch

Neural Discrete Representation Learning

SoundStream: An End-to-End Neural Audio Codec

Self-supervised Learning with Random-projection Quantizer for Speech
  Recognition

Guaranteed Discovery of Control-Endogenous Latent States with Multi-Step
  Inverse Models

Discrete Key-Value Bottleneck

Exploration Into Translation-Equivariant Image Quantization

Finite Scalar Quantization: VQ-VAE Made Simple

Vector Quantized Time Series Generation with a Bidirectional Prior Model

Topological Neural Discrete Representation Learning à la Kohonen

Masked Generative Modeling with Enhanced Sampling Scheme


A python library that implements a number of Privacy Enhancing Technolgies

Chainspace: A Sharded Smart Contracts Platform

Efficient Private Statistics with Succinct Sketches

Coconut: Threshold Issuance Selective Disclosure Credentials with Applications to Distributed Ledgers

VoteAgain: A scalable coercion-resistant voting system

AStERISK: Auction-based Shared Economy ResolutIon Markets for Blockchain Platforms

DatashareNetwork: A Decentralized Privacy-Preserving Search Engine for Investigative Journalists

Might I Get Pwned: A Second Generation Password Breach Alerting Service.

zksk: A Library for Composable Zero-Knowledge Proofs

Workshop on Privacy in the Electronic Society

Datashare: A Decentralized Privacy-Preserving Search Engine for Investigative Journalists


Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis

Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools

The transcription factor HIF2α partakes in the differentiation block of acute myeloid leukemia

Gene Regulatory Interactions at Lamina-Associated Domains

The sex-specific factor SOA controls dosage compensation in Anopheles mosquitoes

Cellular and Genomic Features of Muscle Differentiation from Isogenic Fibroblasts and Myoblasts


A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Unified Focal loss: Generalising Dice and cross entropy-based losses to handle class imbalanced medical image segmentation

MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning

Multi-Organ Segmentation Using a Low-Resource Architecture


General Speech Restoration

VoiceFixer: Toward General Speech Restoration With Neural Vocoder.

VoiceFixer: A Unified Framework for High-Fidelity Speech Restoration

Neural Vocoder is All You Need for Speech Super-resolution

Analysing Diffusion-based Generative Approaches versus Discriminative
  Approaches for Speech Restoration

SelfRemaster: Self-Supervised Speech Restoration with Analysis-by-Synthesis Approach Using Channel Modeling


Simple, effective, and modular package for parsing observables (indicators of compromise (IOCs), network data, and other, security related information) from text. It uses grammars rather than regexes which makes it more readable, maintainable, and hackable. Explore our interactive documentation here: https://hightower.space/ioc-finder/

The Rise of GoodFATR: A Novel Accuracy Comparison Methodology for Indicator Extraction Tools

Identifying Authorship Style in Malicious Binaries: Techniques, Challenges & Datasets.

STIXnet: A Novel and Modular Solution for Extracting All STIX Objects in CTI Reports


Library for multivariate function approximation with splines (B-spline, P-spline, and more) with interfaces to C++, C, Python and MATLAB

CppTransport: a platform to automate calculation of inflationary
  correlation functions

De-localizing brittle fracture

Journal of the mechanics and physics of solids/Journal of the Mechanics and Physics of Solids

Mathematical programming formulations for piecewise polynomial functions

New techniques for jet calibration with the ATLAS detector

The Object Oriented c++ library QIBSH++ for Hermite spline Quasi
  Interpolation

A reduced-order model for segregated fluid-structure interaction solvers
  based on an ALE approach


PyTorch implementation of Super SloMo by Jiang et al.

Super SloMo: High Quality Estimation of Multiple Intermediate Frames for Video Interpolation

Channel Attention Is All You Need for Video Frame Interpolation

THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Quadratic video interpolation

Zooming Slow-Mo: Fast and Accurate One-Stage Space-Time Video Super-Resolution

Deep Animation Video Interpolation in the Wild

V2E: From video frames to realistic DVS event camera streams.

ST-MFNet: A Spatio-Temporal Multi-Flow Network for Frame Interpolation

Motion-based frame interpolation for film and television effects

Zooming SlowMo: An Efficient One-Stage Framework for Space-Time Video Super-Resolution.

Video Interpolation and Prediction with Unsupervised Landmarks


VADER Sentiment Analysis. VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifically attuned to sentiments expressed in social media, and works well on texts from other domains.

FakeNewsNet: A Data Repository with News Content, Social Context, and Spatiotemporal Information for Studying Fake News on Social Media

Hate Speech Detection: A Solved Problem? The Challenging Case of Long Tail on Twitter

A Complete VADER-Based Sentiment Analysis of Bitcoin (BTC) Tweets during the Era of COVID-19

FakeNewsNet: A Data Repository with News Content, Social Context and Spatialtemporal Information for Studying Fake News on Social Media

Detecting Topic and Sentiment Dynamics Due to COVID-19 Pandemic Using Social Media

Sentiment Analysis and Topic Modeling for COVID-19 Vaccine Discussions

Attention and Lexicon Regularized LSTM for Aspect-based Sentiment Analysis

Meeting of the Association for Computational Linguistics

The Revival of the Notes Field: Leveraging the Unstructured Content in Electronic Health Records

Sexist Slurs: Reinforcing Feminine Stereotypes Online

Over a decade of social opinion mining: a systematic review


diploid SNV caller for error-prone reads

Sequencing of Monkeypox virus from infected patients reveals viral genomes with APOBEC3-like editing, gene inactivation, and bacterial agents of skin superinfection

Evaluation of the Available Variant Calling Tools for Oxford Nanopore Sequencing in Breast Cancer

Longshot: accurate variant calling in diploid genomes using single-molecule long read sequencing


Working repository for Causal Tree and extensions

Recursive Partitioning for Heterogeneous Causal Effects

Estimating individual treatment effect: generalization bounds and algorithms

Generalization Bounds and Representation Learning for Estimation of
  Potential Outcomes and Causal Effects

A Unified Survey of Treatment Effect Heterogeneity Modelling and Uplift Modelling

Machine learning to analyze the social-ecological impacts of natural resource policy: insights from community forest management in the Indian Himalaya

Bounding and Minimizing Counterfactual Error.

A general framework for causal classification

International journal of data science and analytics

Heterogeneous Treatment Effects in Regression Discontinuity Designs

Personalization and Optimization of Decision Parameters via Heterogenous Causal Effects.

Machine learning for subgroup discovery under treatment effect


A list projects to make emergency ventilators in response to COVID-19, focusing on free-libre open source

Low-tech solutions for the COVID19 supply chain crisis

Partially RepRapable automated open source bag valve mask-based ventilator

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles

Can Open Source Hardware Mechanical Ventilator (OSH-MVs) initiatives help cope with the COVID-19 health crisis? Taxonomy and state of the art

Overcoming supply disruptions during pandemics by utilizing found hardware for open source gentle ventilation

Emergency Blower-Based Ventilator with Novel-Designed Ventilation Sensor and Actuator

Frugal Innovation: Enabling Mechanical Ventilation During Coronavirus Disease 2019 Pandemic in Resource-Limited Settings

Open ventilator evaluation framework: A synthesized database of regulatory requirements and technical standards for emergency use ventilators from Australia, Canada, UK, and US

The HEV Ventilator.

Evidence-Based Considerations for the Design of an Open-Source Ventilator: A Systematic Review


Package for evaluating word embeddings

Learning General Purpose Distributed Sentence Representations via Large Scale Multi-task Learning

How to evaluate word embeddings? On importance of data efficiency and
  simple supervised tasks

A comparative evaluation and analysis of three generations of Distributional Semantic Models

Learning Numeral Embeddings

Word Similarity Datasets for Thai: Construction and Evaluation

Improving the state-of-the-art in Thai semantic similarity using distributional semantics and ontological information

Regional Differences in Information Privacy Concerns After the Facebook-Cambridge Analytica Data Scandal

Computer supported cooperative work (CSCW)/Computer supported cooperative work

Word Embedding Binarization with Semantic Information Preservation

International Conference on Computational Linguistics

Gating Mechanisms for Combining Character and Word-level Word Representations: An Empirical Study

Analyzing Structures in the Semantic Vector Space: A Framework for Decomposing Word Embeddings.


A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

A practical guide to de novo genome assembly using long reads

A mini foxtail millet with an Arabidopsis-like life cycle as a C4 model system

A high-quality reference genome of wild Cannabis sativa

Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm

High-quality genome assembly of 'Cuiguan' pear (Pyrus pyrifolia) as a reference genome for identifying regulatory genes and epigenetic modifications responsible for bud dormancy

A chromosome-level genome assembly for the beet armyworm (Spodoptera exigua) using PacBio and Hi-C sequencing

A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola)

The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes)

A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data

Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype


Ligra: A Lightweight Graph Processing Framework for Shared Memory

Parallel Local Graph Clustering

Graph Computing Systems and Partitioning Techniques: A Survey

ReGraph: Scaling Graph Processing on HBM-enabled FPGAs with Heterogeneous Pipelines

iPregel: Vertex-centric programmability vs memory efficiency and performance, why choose?

A New Frontier for Pull-Based Graph Processing


High quality, fast, modular reference implementation of SSD in PyTorch

SSD: Single Shot MultiBox Detector

YOLO-Fine: One-Stage Detector of Small Objects Under Various Backgrounds in Remote Sensing Images

FCA: Learning a 3D Full-Coverage Vehicle Camouflage for Multi-View Physical Adversarial Attack

Attention-based domain adaptation for single-stage detectors

CAT: Compression-Aware Training for bandwidth reduction

Active Learning for Deep Neural Networks on Edge Devices


[NeurIPS 2023] Official implementation of the paper "Segment Everything Everywhere All at Once"

Segment Anything

Set-of-Mark Prompting Unleashes Extraordinary Visual Grounding in GPT-4V

Segment Any Point Cloud Sequences by Distilling Vision Foundation Models

LLaVA-Interactive: An All-in-One Demo for Image Chat, Segmentation,
  Generation and Editing

Improving Existing Segmentators Performance with Zero-Shot Segmentators


WaveNet vocoder

HiFi-GAN: Generative Adversarial Networks for Efficient and High Fidelity Speech Synthesis

Adversarial Audio Synthesis

ClariNet: Parallel Wave Generation in End-to-End Text-to-Speech

A Survey on Neural Speech Synthesis

Espnet-TTS: Unified, Reproducible, and Integratable Open Source End-to-End Text-to-Speech Toolkit

BDDM: Bilateral Denoising Diffusion Models for Fast and High-Quality
  Speech Synthesis

The 2020 ESPnet Update: New Features, Broadened Applications, Performance Improvements, and Future Plans

Towards Robust Neural Vocoding for Speech Generation: A Survey

Parallel and Flexible Sampling from Autoregressive Models via Langevin Dynamics

Parametric Resynthesis with neural vocoders


PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow

A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events

Genomic consequences of domestication of the Siamese fighting fish

Long-read HiFi Sequencing Correctly Assembles Repetitive heavy fibroin Silk Genes in New Moth and Caddisfly Genomes

An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes

Genomes of the cosmopolitan fruit pest Bactrocera dorsalis (Diptera: Tephritidae) reveal its global invasion history and thermal adaptation

Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg

Representing sex chromosomes in genome assemblies


A CV toolkit for my papers.

Context Encoding for Semantic Segmentation

ResNeSt: Split-Attention Networks

Co-Occurrent Features in Semantic Segmentation

Deep TEN: Texture Encoding Network

Region Mutual Information Loss for Semantic Segmentation

Linear Semantics in Generative Adversarial Networks

Extracting Semantic Knowledge from GANs with Unsupervised Learning

Adaptive Context Encoding Module for Semantic Segmentation

Refining Semantic Segmentation with Superpixel by Transparent
  Initialization and Sparse Encoder

Crowd Source Scene Change Detection and Local Map Update


aw_nas: A Modularized and Extensible NAS Framework

A Generic Graph-based Neural Architecture Encoding Scheme for Predictor-based NAS

Evaluating Efficient Performance Estimators of Neural Architectures

FTT-NAS: Discovering Fault-Tolerant Convolutional Neural Architecture

CLOSE: Curriculum Learning On the Sharing Extent Towards Better One-shot
  NAS

aw_nas: A Modularized and Extensible NAS framework


A library for debugging/inspecting machine learning classifiers and explaining their predictions

DeepHateExplainer: Explainable Hate Speech Detection in Under-resourced Bengali Language

Leveraging contextual embeddings and self-attention neural networks with bi-attention for sentiment analysis

Journal of intelligent information systems

Classifying variety of customer's online engagement for churn prediction
  with mixed-penalty logistic regression

TSInterpret: A unified framework for time series interpretability

Unreasonable Effectiveness of Rule-Based Heuristics in Solving Russian SuperGLUE Tasks


LuCI - OpenWrt Configuration Interface

Injection Attacks Reloaded: Tunnelling Malicious Payloads over DNS

Feature-Sniffer: Enabling IoT Forensics in OpenWrt based Wi-Fi Access Points

HALE-IoT: Hardening Legacy Internet of Things Devices by Retrofitting Defensive Firmware Modifications and Implants


A large-scale 7B pretraining language model developed by BaiChuan-Inc.

Measuring Massive Multitask Language Understanding

Root Mean Square Layer Normalization

Qwen Technical Report

TableGPT: Towards Unifying Tables, Nature Language and Commands into One
  GPT

GPT Can Solve Mathematical Problems Without a Calculator

Radiology-Llama2: Best-in-Class Large Language Model for Radiology

CMATH: Can Your Language Model Pass Chinese Elementary School Math Test?

Evaluating Large Language Models for Radiology Natural Language Processing

Knowledgeable Preference Alignment for LLMs in Domain-specific Question
  Answering

ChatRadio-Valuer: A Chat Large Language Model for Generalizable
  Radiology Report Generation Based on Multi-institution and Multi-system Data


An R package containing the functions for the Open Bodem Index (OBI)

An Open Soil Health Assessment Framework Facilitating Sustainable Soil Management


An R package that assists with the setup and operation of a collection of soil data summary, comparison, and evaluation reports. These reports are primarily used by USDA-NRCS soil scientists in both initial and update mapping.


A modern Python utility library for climate data collection and management


High-performance Lagragian tracer model, standard compliant and ready to use out-of-the-box


A coupled structural solver written with the C++ finite element library deal.II

preCICE v2: A sustainable and user-friendly coupling library

FEniCS-preCICE: Coupling FEniCS to other Simulation Software


Build Hierarchical Autonomous Agents through Config. Collaborative Growth of Specialized Agents.

Augmented Language Models: a Survey

Let's Verify Step by Step

Specializing Smaller Language Models towards Multi-Step Reasoning

ReWOO: Decoupling Reasoning from Observations for Efficient Augmented
  Language Models

Gentopia: A Collaborative Platform for Tool-Augmented LLMs


Large-scale pretraining for dialogue

DIALOGPT : Large-Scale Generative Pre-training for Conversational Response Generation

Towards a Human-like Open-Domain Chatbot

Knowledge-Grounded Dialogue Generation with Pre-trained Language Models

RedditBias: A Real-World Resource for Bias Evaluation and Debiasing of Conversational Language Models

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Zero-Resource Knowledge-Grounded Dialogue Generation

Conversations Are Not Flat: Modeling the Dynamic Information Flow across Dialogue Utterances

Personalized Response Generation via Generative Split Memory Network

North American Chapter of the Association for Computational Linguistics

Item Response Theory for Efficient Human Evaluation of Chatbots

Proceedings of the First Workshop on Evaluation and Comparison of NLP Systems

On the Generation of Medical Dialogs for COVID-19


Static code analysis tool for detecting recurring patterns in Scratch projects.

Common Bugs in Scratch Programs

Integrating Technology into Computer Science Education

LitterBox: A Linter for Scratch Programs

Code Perfumes: Reporting Good Code to Encourage Learners

Workshop in Primary and Secondary Computing Education

Improving Readability of Scratch Programs with Search-based Refactoring

Common Patterns in Block-Based Robot Programs


reports on carbon removal projects and technologies


A research protocol for deep graph matching.

SuperGlue: Learning Feature Matching with Graph Neural Networks

Learning Combinatorial Embedding Networks for Deep Graph Matching

International Conference on Computer Vision

Neural Graph Matching Network: Learning Lawler's Quadratic Assignment
  Problem with Extension to Hypergraph and Multiple-graph Matching

Deep Graph Matching via Blackbox Differentiation of Combinatorial Solvers

Combinatorial Learning of Robust Deep Graph Matching: An Embedding Based Approach

IEEE transactions on pattern analysis and machine intelligence

Graduated Assignment for Joint Multi-Graph Matching and Clustering with Application to Unsupervised Graph Matching Network Learning

Joint Graph Learning and Matching for Semantic Feature Correspondence

Graph Matching with Bi-level Noisy Correspondence

Equivariant Hypergraph Neural Networks

Deep Learning of Partial Graph Matching via Differentiable Top-K


A collection of special mathematical functions

Relativistic second-order dissipative and anisotropic fluid dynamics in
  the relaxation-time approximation for an ideal gas of massive particles

Shakhov-type extension of the relaxation time approximation in
  relativistic kinetic theory and second-order fluid dynamics

High-order Shakhov-like extension of the relaxation time approximation
  in relativistic kinetic theory


JRCLUST

Cortical pattern generation during dexterous movement is input-driven

A midbrain-thalamus-cortex circuit reorganizes cortical dynamics to initiate movement

Disrupting cortico-cerebellar communication impairs dexterity

Dynamics of the Cortico-Cerebellar Loop Fine-Tune Dexterous Movement

Cell-type-specific plasticity shapes neocortical dynamics for motor learning

bioRxiv : the preprint server for biology

Separating cognitive and motor processes in the behaving mouse


Analyse Nucleic Acids Structure and Simulations with baRNAba

The role of nucleobase interactions in RNA structure and dynamics

Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies

Journal of chemical theory and computation

Barnaba: software for analysis of nucleic acid structures and trajectories

Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments

RNA folding pathways in stop motion

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations

Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions

Conformational Ensemble of RNA Oligonucleotides from Reweighted Molecular Simulations


OMNeT++ Discrete Event Simulator

QuISP: a Quantum Internet Simulation Package

WSN Simulators Evaluation: an Approach Focusing on Energy Awareness

International journal of wireless and mobile networks

An Overview of the Drone Open-Source Ecosystem.

HTBQueue: A Hierarchical Token Bucket Implementation for the
  OMNeT++/INET Framework


Android UI Testing

A Novel Hybrid Method to Analyze Security Vulnerabilities in Android Applications

AMOGA: A Static-Dynamic Model Generation Strategy for Mobile Apps Testing

Comprehension of Ads-supported and Paid Android Applications: Are They Different?

Automation of Android Applications Testing Using Machine Learning Activities Classification

Safe Stream-Based Programming with Refinement Types

PROCEEDINGS OF THE 2018 33RD IEEE/ACM INTERNATIONAL CONFERENCE ON AUTOMTED SOFTWARE ENGINEERING (ASE' 18)

DroidLink: Automated Generation of Deep Links for Android Apps


Python Library for Signal/Image Data Analysis with Transport Methods

Radon Cumulative Distribution Transform Subspace Modeling for Image Classification

Identifying Women With Mammographically- Occult Breast Cancer Leveraging GAN-Simulated Mammograms

The Signed Cumulative Distribution Transform for 1-D Signal Analysis and Classification

Nearest Subspace Search in The Signed Cumulative Distribution Transform Space For 1d Signal Classification

Local Sliced-Wasserstein Feature Sets for Illumination-invariant Face
  Recognition

End-to-End Signal Classification in Signed Cumulative Distribution
  Transform Space

Invariance encoding in sliced-Wasserstein space for image classification with limited training data


Creative Commons Attribution Share Alike 4.0 International

biotoolsSchema : Tool description data model for computational tools in life sciences

ReGaTE: Registration of Galaxy Tools in Elixir

Nine Best Practices for Research Software Registries and Repositories: A
  Concise Guide

Nine best practices for research software registries and repositories


SolarPILOT power tower layout and optimization tool


Debugging, monitoring and visualization for Python Machine Learning and Data Science

DeepDiagnosis: Automatically Diagnosing Faults and Recommending
  Actionable Fixes in Deep Learning Programs

VizSeq: A Visual Analysis Toolkit for Text Generation Tasks

Empirical Methods in Natural Language Processing

A System for Real-Time Interactive Analysis of Deep Learning Training

PROCEEDINGS OF THE ACM SIGCHI SYMPOSIUM ON ENGINEERING INTERACTIVE COMPUTING SYSTEMS (EICS'19)


A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

Subcortical Brain Morphometry Differences between Adults with Autism Spectrum Disorder and Schizophrenia

Estimating cortical thickness trajectories in children across different scanners using transfer learning from normative models

Clinical vitamin D levels are associated with insular volume and inferior temporal gyrus white matter surface area in community-dwelling individuals with knee pain


tmm_fast is a lightweight package to speed up optical planar multilayer thin-film device computation. Developed by Alexander Luce (@Nerrror) in cooperation with Heribert Wankerl (@HarryTheBird).

TMM-Fast: A Transfer Matrix Computation Package for Multilayer Thin-Film Optimization

Parameterized reinforcement learning for optical system optimization

Investigation of inverse design of multilayer thin-films with conditional invertible neural networks


Python implementation of Empirical Mode Decompoisition (EMD) method

The role of seasonality in the spread of COVID-19 pandemic

EMD: Empirical Mode Decomposition and Hilbert-Huang Spectral Analyses in Python

EntropyHub: An open-source toolkit for entropic time series analysis

MFDFA: Efficient multifractal detrended fluctuation analysis in python

Predicting the Dynamics of the COVID-19 Pandemic in the United States Using Graph Theory-Based Neural Networks

International journal of environmental research and public health

Fluctuations of water quality time series in rivers follow superstatistics

The cyclic behaviour in the N–S asymmetry of sunspots and solar plages for the period 1910 to 1937 using data from Ebro catalogues

Monthly notices of the Royal Astronomical Society

Pupil Size Dynamics Predict dLGN Firing Mode Over a Wide Range of Timescales

Multi-resolution dynamic mode decomposition for damage detection in wind turbine gearboxes

Hilbert-Huang Transform analysis of quasi-periodic oscillations in MAXI
  J1820+070


HLS based Deep Neural Network Accelerator Library for Xilinx Ultrascale+ MPSoCs

Best of Both Worlds: AutoML Codesign of a CNN and its Hardware Accelerator

A Survey of FPGA Based Neural Network Accelerator

EDD: Efficient Differentiable DNN Architecture and Implementation Co-search for Embedded AI Solutions

A Systematic Assessment of Embedded Neural Networks for Object Detection

IEEE International Conference on Emerging Technologies and Factory Automation

Energy and Performance Trade-Off Optimization in Heterogeneous Computing via Reinforcement Learning

Dynamic Temperature Management of Near-Sensor Processing for Energy-Efficient High-Fidelity Imaging

CodeX: Bit-Flexible Encoding for Streaming-based FPGA Acceleration of DNNs

Analysis and Optimization of I/O Cache Coherency Strategies for SoC-FPGA Device

Effective Algorithm-Accelerator Co-design for AI Solutions on Edge Devices

GPT4AIGChip: Towards Next-Generation AI Accelerator Design Automation via Large Language Models


Make huge neural nets fit in memory

Training Deep Nets with Sublinear Memory Cost

Memory-Efficient Backpropagation Through Time

i-flow: High-dimensional Integration and Sampling with Normalizing Flows

Machine learning: science and technology

A Practical Survey on Faster and Lighter Transformers

Echo: Compiler-based GPU Memory Footprint Reduction for LSTM RNN Training

Automatic Segmentation of Pulmonary Lobes Using a Progressive Dense V-Network

Fast and Accurate 3D Medical Image Segmentation with Data-swapping
  Method

FetusMap: Fetal Pose Estimation in 3D Ultrasound

Full-Glow: Fully conditional Glow for more realistic image generation


Parameterisation of Equivariant Properties of Particle Systems

Atomic Cluster Expansion: Completeness, Efficiency and Stability

Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning

Equivariant analytical mapping of first principles Hamiltonians to accurate and transferable materials models

Sensitivity and dimensionality of atomic environment representations used for machine learning interatomic potentials.

QM/MM Methods for Crystalline Defects. Part 3: Machine-Learned MM Models

A framework for a generalisation analysis of machine-learned interatomic
  potentials

A Posteriori Error Estimate and Adaptivity for QM/MM Models of
  Crystalline Defects


An R package for the extraction of sentiment and sentiment-based plot arcs from text

An “Infodemic”: Leveraging High-Volume Twitter Data to Understand Early Public Sentiment for the Coronavirus Disease 2019 Outbreak

Tweet Topics and Sentiments Relating to COVID-19 Vaccination Among Australian Twitter Users: Machine Learning Analysis

Feeling Positive About Reopening? New Normal Scenarios From COVID-19 US Reopen Sentiment Analytics

Patients With Cancer and COVID-19: A WhatsApp Messenger-Based Survey of Patients’ Queries, Needs, Fears, and Actions Taken

Public Sentiment Analysis on Twitter Data during COVID-19 Outbreak

International journal of advanced computer science and applications/International journal of advanced computer science & applications

Cultural heritage through the lens of COVID-19

Feeling Like it is Time to Reopen Now? COVID-19 New Normal Scenarios Based on Reopening Sentiment Analytics

How are major gambling brands using Twitter?

Emotional Sentence Annotation Helps Predict Fiction Genre

Identifying the sentiment styles of YouTube's vloggers


Package to analyze EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

Circadian and Brain State Modulation of Network Hyperexcitability in Alzheimer’s Disease

An altered balance of integrated and segregated brain activity is a marker of cognitive deficits following sleep deprivation

Altered sleep spindles and slow waves during space shuttle missions

The association between overnight recognition accuracy and slow oscillation-spindle coupling is moderated by BDNF Val66Met

The Overnight Retention of Novel Metaphors Associates With Slow Oscillation–Spindle Coupling but Not With Respiratory Phase at Encoding


PyTorch to Keras model convertor

Towards a Roadmap on Software Engineering for Responsible AI

Responsible AI Pattern Catalogue: A Collection of Best Practices for AI Governance and Engineering

Covid-19 detection using chest X-rays: is lung segmentation important for generalization?


Aggregable Confidential Transactions for Efficient Quantum-Safe Cryptocurrencies

From MLWE to RLWE: A Differential Fault Attack on Randomized & Deterministic Dilithium

IACR transactions on cryptographic hardware and embedded systems

High-Throughput GPU Implementation of Dilithium Post-Quantum Digital
  Signature

An End-to-End Analysis of EMFI on Bit-sliced Post-Quantum
  Implementations


Python bindings for NCO


RAPPOR: Privacy-Preserving Reporting Algorithms

Practical Locally Private Heavy Hitters

Local Differential Privacy: a tutorial

ARA: Aggregated RAPPOR and Analysis for Centralized Differential Privacy


The Bitcoin Fungibility Framework

Pinpointing and Measuring Wasabi and Samourai CoinJoins in the Bitcoin Ecosystem.

Adoption and Actual Privacy of Decentralized CoinJoin Implementations in Bitcoin

Heuristics for Detecting CoinJoin Transactions on the Bitcoin Blockchain

BaseSAP: Modular Stealth Address Protocol for Programmable Blockchains


Dataset distribution for Seurat

Deep learning tackles single-cell analysis A survey of deep learning for
  scRNA-seq analysis

Cell type hierarchy reconstruction via reconciliation of multi-resolution cluster tree

Human genetics uncovers MAP3K15 as an obesity-independent therapeutic target for diabetes

FlexDotPlot: a universal and modular dot plot visualization tool for complex multifaceted data

Multi-modal quantification of pathway activity with MAYA

Is your data alignable? Principled and interpretable alignability
  testing and integration of single-cell data

Single-cell Multi-view Clustering via Community Detection with Unknown
  Number of Clusters


HTSeq is a Python library to facilitate processing and analysis of data from  high-throughput sequencing (HTS) experiments.

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

Spinal Cord Injury Induces Permanent Reprogramming of Microglia into a Disease-Associated State Which Contributes to Functional Recovery

The journal of neuroscience/The Journal of neuroscience

Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy

Transcriptional profiling of Hutchinson-Gilford Progeria syndrome fibroblasts reveals deficits in mesenchymal stem cell commitment to differentiation related to early events in endochondral ossification

Isolation of Anaerobic Bromate-Reducing Bacteria Using Different Carbon Sources and Transcriptomic Insights From Klebsiella variicola Glu3

Differential contributions of nuclear lamina association and genome compartmentalization to gene regulation

Manipulation of TAD reorganization by chemical-dependent genome linking


Wasserstein GAN

Variational Approaches for Auto-Encoding Generative Adversarial Networks

Evolving Mario Levels in the Latent Space of a Deep Convolutional
  Generative Adversarial Network

Many Paths to Equilibrium: GANs Do Not Need to Decrease a Divergence At Every Step

Countering Malicious DeepFakes: Survey, Battleground, and Horizon

SynFi: Automatic Synthetic Fingerprint Generation

A Classification-Based Perspective on GAN Distributions

An Interactive Evolution Strategy based Deep Convolutional Generative Adversarial Network for 2D Video Game Level Procedural Content Generation

International Joint Conference on Neural Network

Ensembles of Generative Adversarial Networks for Disconnected Data


A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data

Combining satellite data and appropriate objective functions for improved spatial pattern performance of a distributed hydrologic model

Estimation of evapotranspiration of temperate grassland based on high-resolution thermal and visible range imagery from unmanned aerial systems

Spatial pattern evaluation of a calibrated national hydrological model – a remote-sensing-based diagnostic approach

Feasibility of Using the Two-Source Energy Balance Model (TSEB) with Sentinel-2 and Sentinel-3 Images to Analyze the Spatio-Temporal Variability of Vine Water Status in a Vineyard

Influence of Model Grid Size on the Estimation of Surface Fluxes Using the Two Source Energy Balance Model and sUAS Imagery in Vineyards

Seasonal Adaptation of the Thermal-Based Two-Source Energy Balance Model for Estimating Evapotranspiration in a Semiarid Tree-Grass Ecosystem

Spatial Patterns in Actual Evapotranspiration Climatologies for Europe

Spatial Pattern Oriented Multicriteria Sensitivity Analysis of a Distributed Hydrologic Model

Performance of the Two-Source Energy Balance (TSEB) Model as a Tool for Monitoring the Response of Durum Wheat to Drought by High-Throughput Field Phenotyping

High Spatial and Temporal Resolution Energy Flux Mapping of Different Land Covers Using an Off-the-Shelf Unmanned Aerial System


Evolutionary algorithm toolbox and framework with high performance for Python

Hybridization of evolutionary algorithm and deep reinforcement learning
  for multi-objective orienteering optimization

EC-KitY: Evolutionary computation tool kit in Python with seamless machine learning integration

Enhancing Multi-Objective Optimization with Automatic Construction of Parallel Algorithm Portfolios


A Thai word tokenization library using Deep Neural Network

Syllable-based Neural Thai Word Segmentation

International Conference on Computational Linguistics

Word Similarity Datasets for Thai: Construction and Evaluation

Multiple Segmentations of Thai Sentences for Neural Machine Translation

Improving the state-of-the-art in Thai semantic similarity using distributional semantics and ontological information

Thai Wav2Vec2.0 with CommonVoice V8

Lukthung Classification Using Neural Networks on Lyrics and Audios


CodeGen is a family of open-source model for program synthesis. Trained on TPU-v4. Competitive with OpenAI Codex.

CodeGen: An Open Large Language Model for Code with Multi-Turn Program
  Synthesis

A Comprehensive Survey of AI-Generated Content (AIGC): A History of
  Generative AI from GAN to ChatGPT

CodeGen2: Lessons for Training LLMs on Programming and Natural Languages

Capturing Failures of Large Language Models via Human Cognitive Biases

Natural Language to Code Generation in Interactive Data Science Notebooks

Law Informs Code: A Legal Informatics Approach to Aligning Artificial Intelligence with Humans

A Simple, Yet Effective Approach to Finding Biases in Code Generation

A Survey on Large Language Models for Software Engineering

Extracting Meaningful Attention on Source Code: An Empirical Study of
  Developer and Neural Model Code Exploration

Understanding LLMs: A Comprehensive Overview from Training to Inference


Creative Commons Attribution 4.0 International

ARTIC nanopore protocol for nCoV2019 novel coronavirus

Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

medRxiv : the preprint server for health sciences

In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2

Emergence and expansion of SARS-CoV-2 B.1.526 after identification in New York

Disentangling primer interactions improves SARS-CoV-2 genome sequencing by the ARTIC Network’s multiplex PCR

Stability of SARS-CoV-2 phylogenies

The UCSC SARS-CoV-2 Genome Browser


GPU code for spike sorting

Kilosort: realtime spike-sorting for extracellular electrophysiology with hundreds of channels

Fast and accurate spike sorting of high-channel count probes with KiloSort

Cerebellar Contribution to Preparatory Activity in Motor Neocortex

Feedback generates a second receptive field in neurons of the visual cortex

Sensory coding and the causal impact of mouse cortex in a visual decision

Cerebellar involvement in an evidence-accumulation decision-making task

Cross-hemispheric gamma synchrony between prefrontal parvalbumin interneurons supports behavioral adaptation during rule shift learning

Entorhinal-retrosplenial circuits for allocentric-egocentric transformation of boundary coding

Distinct Structure of Cortical Population Activity on Fast and Infraslow Timescales

Neural circuits underlying auditory contrast gain control and their perceptual implications


The PYthoN General UnIt Test geNerator is a test-generation tool for Python

Automated Unit Test Generation for Python

Symposium on Search Based Software Engineering

An empirical study of automated unit test generation for Python

An annotation-based approach for finding bugs in neural network programs


Fuzzy String Matching in Python

Large Language Model as Attributed Training Data Generator: A Tale of
  Diversity and Bias

Words are all you need? Language as an approximation for human
  similarity judgments

WangLab at MEDIQA-Chat 2023: Clinical Note Generation from Doctor-Patient Conversations using Large Language Models

Revisiting non-English Text Simplification: A Unified Multilingual Benchmark

Automatically Generating Scenarios from a Text Corpus: A Case Study on Electric Vehicles

A comprehensive analysis of acknowledgement texts in Web of Science: a case study on four scientific domains

DRG-LLaMA : Tuning LLaMA Model to Predict Diagnosis-related Group for
  Hospitalized Patients

CodeLMSec Benchmark: Systematically Evaluating and Finding Security
  Vulnerabilities in Black-Box Code Language Models

What's in a Caption? Dataset-Specific Linguistic Diversity and Its
  Effect on Visual Description Models and Metrics

Beyond Good Intentions: Reporting the Research Landscape of NLP for Social Good


Fast solver for L1-type problems: Lasso, sparse Logisitic regression, Group Lasso, weighted Lasso, Multitask Lasso, etc.

Celer: a Fast Solver for the Lasso with Dual Extrapolation

Dual Extrapolation for Sparse Generalized Linear Models

Statistical control for spatio-temporal MEG/EEG source imaging with desparsified multi-task Lasso

On Newton Screening


Keyphrase Generation

Convolutional Sequence to Sequence Learning

Deep Keyphrase Generation

Simple Recurrent Units for Highly Parallelizable Recurrence

One Size Does Not Fit All: Generating and Evaluating Variable Number of Keyphrases

An Empirical Study on Neural Keyphrase Generation

TNT-KID: Transformer-based neural tagger for keyword identification

Does Order Matter? An Empirical Study on Generating Multiple Keyphrases as a Sequence

UniKeyphrase: A Unified Extraction and Generation Framework for Keyphrase Prediction

Keyphrase Extraction with Incomplete Annotated Training Data

Proceedings of the Seventh Workshop on Noisy User-generated Text (W-NUT 2021)

General-to-Specific Transfer Labeling for Domain Adaptable Keyphrase Generation


A Deep Learning UCI-Chess Variant Engine written in C++ & Python :parrot:

Mastering Chess and Shogi by Self-Play with a General Reinforcement Learning Algorithm

Learning to Play the Chess Variant Crazyhouse Above World Champion Level With Deep Neural Networks and Human Data

Hyper-Parameter Sweep on AlphaZero General

Monte-Carlo Graph Search for AlphaZero

AlphaZe∗∗: AlphaZero-like baselines for imperfect information games are surprisingly strong

Representation Matters: The Game of Chess Poses a Challenge to Vision
  Transformers


StyleTTS 2: Towards Human-Level Text-to-Speech through Style Diffusion and Adversarial Training with Large Speech Language Models

XPhoneBERT: A Pre-trained Multilingual Model for Phoneme Representations for Text-to-Speech


Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Kaiju: Fast and sensitive taxonomic classification for metagenomics

DeepMicrobeFinder Sorts Metagenomes into Prokaryotes, Eukaryotes and Viruses, with Marine Applications

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis

The first horse gut microbiome gene catalog reveals that rare microbiome ensures better cardiovascular fitness in endurance horses


Provide mapping and localization pipelines based on kapture format

Robust Image Retrieval-based Visual Localization using Kapture

Benchmarking Image Retrieval for Visual Localization

Learning Super-Features for Image Retrieval

Investigating the Role of Image Retrieval for Visual Localization

International journal of computer vision


Automated, hardware-independent Hand-Eye Calibration

Perceiver-Actor: A Multi-Task Transformer for Robotic Manipulation

Camera-to-Robot Pose Estimation from a Single Image

Act3D: 3D Feature Field Transformers for Multi-Task Robotic Manipulation

A Universal Semantic-Geometric Representation for Robotic Manipulation


Experiments with experimental rule-based models to go along with imodels.

Hierarchical Shrinkage: improving the accuracy and interpretability of
  tree-based methods

Fast Interpretable Greedy-Tree Sums

MDI+: A Flexible Random Forest-Based Feature Importance Framework

Group Probability-Weighted Tree Sums for Interpretable Modeling of
  Heterogeneous Data


Codes for supersymmetric lattice gauge theories

Parallel software for lattice N=4 supersymmetric Yang-Mills theory

Testing holography using lattice super-Yang-Mills theory on a 2-torus

Results from lattice simulations of N=4 supersymmetric Yang--Mills

Proceedings of The 32nd International Symposium on Lattice Field Theory — PoS(LATTICE2014)

Progress and prospects of lattice supersymmetry

Proceedings of The 36th Annual International Symposium on Lattice Field Theory — PoS(LATTICE2018)

Three-dimensional super-Yang-Mills theory on the lattice and dual black branes

Latest results from lattice N=4 supersymmetric Yang--Mills

Proceedings of 34th annual International Symposium on Lattice Field Theory — PoS(LATTICE2016)

Markov Chain Monte Carlo for Dummies

Thermal phase structure of dimensionally reduced super-Yang--Mills

Aspects of lattice N=4 supersymmetric Yang--Mills

Proceedings of The 33rd International Symposium on Lattice Field Theory — PoS(LATTICE 2015)

Thermal phase structure of a supersymmetric matrix model

Proceedings of 37th International Symposium on Lattice Field Theory — PoS(LATTICE2019)


A Survey on Graph Counterfactual Explanations: Definitions, Methods,
  Evaluation

GRETEL: Graph Counterfactual Explanation Evaluation Framework

Counterfactual Learning on Graphs: A Survey


A transients-discovery pipeline for astronomical image-based surveys

The LOFAR Transients Pipeline

The ASKAP/EMU Source Finding Data Challenge

Publications of the Astronomical Society of Australia/Publications Astronomical Society of Australia

The AARTFAAC All Sky Monitor: System Design and Implementation

A pilot ASKAP survey of radio transient events in the region around the intermittent pulsar PSR J1107−5907

Monthly Notices of the Royal Astronomical Society

The Arcminute Microkelvin Imager catalogue of gamma-ray burst afterglows at 15.7 GHz

PySE: Software for extracting sources from radio images

LOFAR early-time search for coherent radio emission from GRB 180706A

Monthly notices of the Royal Astronomical Society

VaST: a variability search toolkit

Long-term study of extreme giant pulses from PSR B0950+08 with AARTFAAC

kern

Shakespeare and National Identity : A Dictionary


Multichannel Igor Electrophysiology Suite

Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex

The Neurodata Without Borders ecosystem for neurophysiological data science

Synaptic connectivity to L2/3 of primary visual cortex measured by two-photon optogenetic stimulation

Multimodal cell type correspondence by intersectional mFISH in intact tissues

Human voltage-gated Na+and K+channel properties underlie sustained fast AP signaling

Genes associated with cognitive ability and HAR show overlapping expression patterns in human cortical neuron types

Cell class-specific electric field entrainment of neural activity

bioRxiv : the preprint server for biology


The code to reproduce results from paper "MultiFiT: Efficient Multi-lingual Language Model Fine-tuning" https://arxiv.org/abs/1909.04761

Don't Use English Dev: On the Zero-Shot Cross-Lingual Evaluation of Contextual Embeddings

Semi-supervised Contextual Historical Text Normalization

Meeting of the Association for Computational Linguistics


Input/output and manipulation utilities for LiPD files in Matlab, R and Python

A global multiproxy database for temperature reconstructions of the Common Era

Holocene global mean surface temperature, a multi-method reconstruction approach

A global database of Holocene paleotemperature records

Technical note: The Linked Paleo Data framework – a common tongue for paleoclimatology

Integrating palaeoclimate time series with rich metadata for uncertainty modelling: strategy and documentation of the PalMod 130k marine palaeoclimate data synthesis


Python module for stochastic residential occupancy behavior for both building and district energy simulations.

A Markov Process Approach to Ensemble Control of Smart Buildings


Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Genetic identification of brain cell types underlying schizophrenia

Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq

Dystonia genes functionally converge in specific neurons and share neurobiology with psychiatric disorders

Regional brain iron and gene expression provide insights into neurodegeneration in Parkinson’s disease

Differences in network controllability and regional gene expression underlie hallucinations in Parkinson’s disease

Genes influenced by MEF2C contribute to neurodevelopmental disease via gene expression changes that affect multiple types of cortical excitatory neurons

Heterogeneous somatostatin-expressing neuron population in mouse ventral tegmental area

An Integrated Genomic Approach to Dissect the Genetic Landscape Regulating the Cell-to-Cell Transfer of α-Synuclein

Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into the complex genetic architecture

Genome-wide association study of REM sleep behavior disorder identifies novel loci with distinct polygenic and brain expression effects


WDL’s and Dockerfiles for assembly QC process

A draft human pangenome reference

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Semi-automated assembly of high-quality diploid human reference genomes

Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph.


A minimal benchmark for scalability, speed and accuracy of commonly used open source implementations (R packages, Python scikit-learn, H2O, xgboost, Spark MLlib etc.) of the top machine learning algorithms for binary classification (random forests, gradient boosted trees, deep neural networks etc.).

SML-Bench – A benchmarking framework for structured machine learning

Zenodo (CERN European Organization for Nuclear Research)

Modified Genetic Algorithm for Feature Selection and Hyper Parameter Optimization: Case of XGBoost in Spam Prediction

Data-Driven Modeling for Multiphysics Parametrized Problems-Application to Induction Hardening Process

Optimal Minimal Margin Maximization with Boosting

Silas: High Performance, Explainable and Verifiable Machine Learning

Booster: An Accelerator for Gradient Boosting Decision Trees Training and Inference

Defining Big Data Analytics Benchmarks for Next Generation
  Supercomputers

Extracting Optimal Explanations for Ensemble Trees via Logical Reasoning

Factorization Machines with Regularization for Sparse Feature Interactions

Scalable Feature Selection for (Multitask) Gradient Boosted Trees


An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

Peptides: A Package for Data Mining of Antimicrobial Peptides

Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants

HeMoQuest: a webserver for qualitative prediction of transient heme binding to protein motifs

Spatial and temporal proteomics reveals the distinct distributions and dynamics of O-GlcNAcylated proteins

Bottom-Up Design Approach for OBOC Peptide Libraries

TNKPVI, a Putative Bioaccessible Pharmacophore of Anti-Inflammatory Potato Patatin-Derived Decapeptide DIKTNKPVIF

Functional evolution of SARS-CoV-2 spike protein: Maintaining wide host spectrum and enhancing infectivity via surface charge of spike protein

Computational and structural biotechnology journal

The bigger picture: global analysis of solubilization performance of classical detergents versus new synthetic polymers utilizing shotgun proteomics

Accelerating the Screening of Small Peptide Ligands by Combining Peptide-Protein Docking and Machine Learning

International journal of molecular sciences


Line-By-Line Radiative Transfer Model by Atmospheric and Environmental Research

Simulated multispectral temperature and atmospheric composition retrievals for the JPL GEO-IR Sounder


A collection of 100+ pre-trained RL agents using Stable Baselines, training and hyperparameter optimization included.

BayesSim: adaptive domain randomization via probabilistic inference for robotics simulators

Action Space Shaping in Deep Reinforcement Learning

Scalable Bayesian Inverse Reinforcement Learning

Strictly Batch Imitation Learning by Energy-based Distribution Matching

Certifiable Robustness to Adversarial State Uncertainty in Deep Reinforcement Learning

Minimalistic Attacks: How Little It Takes to Fool Deep Reinforcement Learning Policies

Conditionally Elicitable Dynamic Risk Measures for Deep Reinforcement Learning

Invariant Causal Imitation Learning for Generalizable Policies

Policy Learning Using Weak Supervision

Diffusion-based Reinforcement Learning for Edge-enabled AI-Generated Content Services


Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

JAFFAL: detecting fusion genes with long-read transcriptome sequencing

Detection of alternative isoforms of gene fusions from long-read RNA-seq with FLAIR-fusion


Code for "On the Utility of Learning about Humans for Human-AI Coordination"

Heterogeneous Multi-agent Zero-Shot Coordination by Coevolution

Cooperative Open-ended Learning Framework for Zero-shot Coordination

Tackling Cooperative Incompatibility for Zero-Shot Human-AI Coordination

A Hierarchical Approach to Population Training for Human-AI Collaboration

Semantically Aligned Task Decomposition in Multi-Agent Reinforcement
  Learning


Discourse Network Analyzer (DNA)

A discourse network analysis of UK newspaper coverage of the “sugar tax” debate before and after the announcement of the Soft Drinks Industry Levy

JOURNAL OF EPIDEMIOLOGY AND COMMUNITY HEALTH

Mapping discourse coalitions in the minimum unit pricing for alcohol debate: a discourse network analysis of UK newspaper coverage

Staying away, staying alive: Exploring risk and stigma of COVID-19 in the context of beliefs, actors and hierarchies in India

Incumbents’ Strategies in Media Coverage: A Case of the Czech Coal Policy

Framing brain drain: between solidarity and skills in European labor mobility

Review of international political economy

Policy congruence and advocacy strategies in the discourse networks of minimum unit pricing for alcohol and the soft drinks industry levy

Media Coverage and Perceived Policy Influence of Environmental Actors: Good Strategy or Pyrrhic Victory?

Gatekeeping the Plenary Floor: Discourse Network Analysis as a Novel Approach to Party Control

NLP for Climate Policy: Creating a Knowledge Platform for Holistic and Effective Climate Action

Vorstellungen legitimen Regierens: Legitimationspolitik in der Großen Regierungserklärung der 19. Wahlperiode im Vergleich

Zeitschrift für vergleichende Politikwissenschaft


Tiny Differentiable Simulator is a header-only C++ and CUDA physics library for reinforcement learning and robotics with zero dependencies.

gradSim: Differentiable simulation for system identification and visuomotor control

Gradients are Not All You Need

Interactive Differentiable Simulation

Efficient Differentiable Simulation of Articulated Bodies

Augmenting Differentiable Simulators with Neural Networks to Close the Sim2Real Gap

Differentiable and Learnable Robot Models

Inferring Articulated Rigid Body Dynamics from RGBD Video

Follow the Gradient: Crossing the Reality Gap using Differentiable Physics (RealityGrad).

Certifiable Robot Design Optimization using Differentiable Programming


Enhancing {ggplot2} plots with statistical analysis

GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune Infiltration

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies

Significant reduction in depressive symptoms among patients with moderately-severe to severe depressive symptoms after participation in a therapist-supported, evidence-based mobile health program delivered via a smartphone app

Distinct Profiles of 50 kHz Vocalizations Differentiate Between Social Versus Non-social Reward Approach and Consumption

Integrated Analysis of Tumor Mutation Burden and Immune Infiltrates in Hepatocellular Carcinoma

Identification of Potential Key Biomarkers of Atrial Fibrillation and Their Correlation with Immune Infiltration in Atrial Tissue

Computational and mathematical methods in medicine

Identification of prognosis-related hub genes of ovarian cancer through bioinformatics analyses and experimental verification

Combined Inhibition of UBE2C and PLK1 Reduce Cell Proliferation and Arrest Cell Cycle by Affecting ACLY in Pan-Cancer

Bioinformatic Characterization of Whole Blood Neutrophils in Pelvic Inflammatory Disease: A Potential Prognostic Indicator for Transumbilical Single-Port Laparoscopic Pelvic Abscess Surgery


Python package for automatic tree crown delineation based on the Detectron2 implementation of Mask R-CNN

Accurate delineation of individual tree crowns in tropical forests from aerial RGB imagery using Mask R-CNN


UniSpeech  - Large Scale Self-Supervised Learning for Speech

WavLM: Large-Scale Self-Supervised Pre-Training for Full Stack Speech Processing

UniSpeech: Unified Speech Representation Learning with Labeled and Unlabeled Data

Speak, Read and Prompt: High-Fidelity Text-to-Speech with Minimal Supervision

Unispeech-Sat: Universal Speech Representation Learning With Speaker Aware Pre-Training

VioLA: Unified Codec Language Models for Speech Recognition, Synthesis,
  and Translation

SoundStorm: Efficient Parallel Audio Generation

Self-Supervised Learning for speech recognition with Intermediate layer
  supervision

Improving Self-Supervised Learning for Speech Recognition with Intermediate Layer Supervision

ICASSP 2022 - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

Boosting Large Language Model for Speech Synthesis: An Empirical Study

The ID R&D VoxCeleb Speaker Recognition Challenge 2023 System
  Description


Not HDF5

A connectome and analysis of the adult Drosophila central brain

Labkit: Labeling and Segmentation Toolkit for Big Image Data

Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain

A Hitchhiker`s Guide through the Bio-image Analysis Software Universe

OME-NGFF: scalable format strategies for interoperable bioimaging data

Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy

How innovations in methodology offer new prospects for volume electron microscopy

Image-based representation of massive spatial transcriptomics datasets

Deep Lake: a Lakehouse for Deep Learning

Time to Upgrade: A New OpenSPIM Guide to Build and Operate Advanced OpenSPIM Configurations


Minimal keyword extraction with BERT

Natural Language Processing in-and-for Design Research

TEXTOIR: An Integrated and Visualized Platform for Text Open Intent Recognition

Известия Самарского научного центра Российской академии наук

Generative Transformers for Design Concept Generation

Empathetic Dialogue Generation with Pre-trained RoBERTa-GPT2 and External Knowledge

SAPPHIRE: Approaches for Enhanced Concept-to-Text Generation

LeiBi@COLIEE 2022: Aggregating Tuned Lexical Models with a
  Cluster-driven BERT-based Model for Case Law Retrieval

ConvTrans: Transforming Web Search Sessions for Conversational Dense Retrieval

Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing

Retrieval augmentation of large language models for lay language generation

Enhancing patent retrieval using text and knowledge graph embeddings: a technical note

A Simple, Yet Effective Approach to Finding Biases in Code Generation


Spherical CNNs

Spherical CNNs

Kernel Transformer Networks for Compact Spherical Convolution

DeepSphere: a graph-based spherical CNN

Convolutional Networks for Spherical Signals

Intertwiners between Induced Representations (with Applications to the Theory of Equivariant Neural Networks)

A Spherical Convolution Approach for Learning Long Term Viewport Prediction in 360 Immersive Video

THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

WSDesc: Weakly Supervised 3D Local Descriptor Learning for Point Cloud Registration

IEEE transactions on visualization and computer graphics


Turn Tweet IDs into Twitter JSON & CSV from your desktop!

Tracking Social Media Discourse About the COVID-19 Pandemic: Development of a Public Coronavirus Twitter Data Set

Studying Reddit: A Systematic Overview of Disciplines, Approaches, Methods, and Ethics

Topics, Trends, and Sentiments of Tweets About the COVID-19 Pandemic: Temporal Infoveillance Study

Large Arabic Twitter Dataset on COVID-19

#Election2020: the first public Twitter dataset on the 2020 US Presidential election

CoVaxxy: A Collection of English-Language Twitter Posts About COVID-19 Vaccines

Sentiment Analysis on COVID-19-Related Social Distancing in Canada Using Twitter Data

International journal of environmental research and public health

Cross-platform spread: vaccine-related content, sources, and conspiracy theories in YouTube videos shared in early Twitter COVID-19 conversations

COVID-19 Twitter Dataset with Latent Topics, Sentiments and Emotions Attributes

A Stance Data Set on Polarized Conversations on Twitter about the Efficacy of Hydroxychloroquine as a Treatment for COVID-19


Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations

Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction

Activity-dependent regulome of human GABAergic neurons reveals new patterns of gene regulation and neurological disease heritability

CTCF and transcription influence chromatin structure re-configuration after mitosis

KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress

SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease

IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia

Mapping cis-regulatory elements in human neurons links psychiatric disease heritability and activity-regulated transcriptional programs

hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context

3D genome organization links non-coding disease-associated variants to genes

Frontiers in cell and developmental biology


keras implement of transformers for humans

ZLPR: A Novel Loss for Multi-label Classification

ELECTRA is a Zero-Shot Learner, Too

A Polyphone BERT for Polyphone Disambiguation in Mandarin Chinese

DACPGTN: Drug ATC Code Prediction Method Based on Graph Transformer Network for Drug Discovery

Development and Application of Knowledge Graphs for the Injection Molding Process


Compilation, analysis and optimization framework for the Scaffold quantum programming language.

Open Quantum Assembly Language

Full-Stack, Real-System Quantum Computer Studies: Architectural Comparisons and Design Insights

Open source software in quantum computing

Statistical Assertions for Validating Patterns and Finding Bugs in Quantum Programs

PROCEEDINGS OF THE 2019 46TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE (ISCA '19)

QASMBench: A Low-Level Quantum Benchmark Suite for NISQ Evaluation and Simulation

Architecting Noisy Intermediate-Scale Trapped Ion Quantum Computers

Efficient decomposition methods for controlled-R n using a single ancillary qubit

Formal constraint-based compilation for noisy intermediate-scale quantum systems

Quingo: A Programming Framework for Heterogeneous Quantum-Classical Computing with NISQ Features

Logical Abstractions for Noisy Variational Quantum Algorithm Simulation


Large language models (LLMs) made easy, EasyLM is a one stop solution for pre-training, finetuning, evaluating and serving LLMs in JAX/Flax.

LLaMA: Open and Efficient Foundation Language Models

The False Promise of Imitating Proprietary LLMs

Focused Transformer: Contrastive Training for Context Scaling

Camels in a Changing Climate: Enhancing LM Adaptation with Tulu 2

Lemur: Harmonizing Natural Language and Code for Language Agents

Self Information Update for Large Language Models through Mitigating
  Exposure Bias

Multilingual Mathematical Autoformalization


Bioinformatics code libraries and scripts

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments

Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes

Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea

Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity

Transcriptional Landscape of Small Non-coding RNAs in Somatic and Gonadal Tissues of Brachyuran Crabs (Genus Eriocheir and Portunus)


n2p2 - A Neural Network Potential Package

Ab initio structure and thermodynamics of the RPBE-D3 water/vapor interface by neural-network molecular dynamics.

Predicting oxidation and spin states by high-dimensional neural networks: Applications to lithium manganese oxide spinels

Closing the gap between theory and experiment for lithium manganese oxide spinels using a high-dimensional neural network potential

Insights into lithium manganese oxide-water interfaces using machine learning potentials

Improved description of atomic environments using low-cost polynomial functions with compact support

Implementing a neural network interatomic model with performance portability for emerging exascale architectures

Phonon-induced localization of excitons in molecular crystals from first
  principles

Natural aging and vacancy trapping in Al-6xxx


GLM (General Language Model)

The Pile: An 800GB Dataset of Diverse Text for Language Modeling

GPT Understands, Too

GLM: General Language Model Pretraining with Autoregressive Blank Infilling

GLM-130B: An Open Bilingual Pre-trained Model

DeepStruct: Pretraining of Language Models for Structure Prediction

FewNLU: Benchmarking State-of-the-Art Methods for Few-Shot Natural Language Understanding

GKD: A General Knowledge Distillation Framework for Large-scale Pre-trained Language Model

Understanding LLMs: A Comprehensive Overview from Training to Inference


Tensor Train decomposition on TensorFlow (T3F)

Automatic differentiation for Riemannian optimization on low-rank matrix
  and tensor-train manifolds


This repository contains data readers and examples for the three tracks of the Shifts Dataset and the Shifts Challenge.

Shifts: A Dataset of Real Distributional Shift Across Multiple Large-Scale Tasks

Shifts 2.0: Extending The Dataset of Real Distributional Shifts


Convolutional Neural Networks

YOLOv4: Optimal Speed and Accuracy of Object Detection

YOLOv7: Trainable Bag-of-Freebies Sets New State-of-the-Art for Real-Time Object Detectors

Objects as Points

DOTA: A Large-scale Dataset for Object Detection in Aerial Images

Fooling automated surveillance cameras: adversarial patches to attack person detection

MetaAnchor: Learning to Detect Objects with Customized Anchors

R^3-Net: A Deep Network for Multi-oriented Vehicle Detection in Aerial Images and Videos

IEEE transactions on geoscience and remote sensing

Practices and Applications of Convolutional Neural Network-Based Computer Vision Systems in Animal Farming: A Review

Detection of Cardiac Structural Abnormalities in Fetal Ultrasound Videos Using Deep Learning

Efficient disease detection in gastrointestinal videos – global features versus neural networks


A simple command line tool for text to image generation, using OpenAI's CLIP and a BigGAN. Technique was originally created by https://twitter.com/advadnoun

Large Scale GAN Training for High Fidelity Natural Image Synthesis

Modern Evolution Strategies for Creativity: Fitting Concrete Images and Abstract Concepts

Visual Conceptual Blending with Large-scale Language and Vision Models

Generative Art Using Neural Visual Grammars and Dual Encoders

Seeding Diversity into AI Art

ImaginE: An Imagination-Based Automatic Evaluation Metric for Natural Language Generation

The Cultivated Practices of Text-to-Image Generation

Artistic Strategies to Guide Neural Networks


Convolutional Neural Network for Text Classification in Tensorflow

A Sensitivity Analysis of (and Practitioners' Guide to) Convolutional Neural Networks for Sentence Classification

FakeNewsNet: A Data Repository with News Content, Social Context, and Spatiotemporal Information for Studying Fake News on Social Media

Hate Speech Dataset from a White Supremacy Forum

Active Bias: Training More Accurate Neural Networks by Emphasizing High Variance Samples

All-but-the-Top: Simple and Effective Postprocessing for Word Representations

CASCADE: Contextual Sarcasm Detection in Online Discussion Forums

FakeNewsNet: A Data Repository with News Content, Social Context and Spatialtemporal Information for Studying Fake News on Social Media

Fake news detection based on news content and social contexts: a transformer-based approach

International journal of data science and analytics

Open-world Machine Learning: Applications, Challenges, and Opportunities


Clear files and folders.

A Benchmark of JSON-compatible Binary Serialization Specifications

Benchmarking JSON BinPack


zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

CancerSCEM: a database of single-cell expression map across various human cancers

Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals

High-throughput scNMT protocol for multiomics profiling of single cells from mouse brain and pancreatic organoids


TrojanZoo provides a universal pytorch platform to conduct security researches (especially backdoor attacks/defenses) of image classification in deep learning.

BadNets: Identifying Vulnerabilities in the Machine Learning Model Supply Chain

Anti-Backdoor Learning: Training Clean Models on Poisoned Data

Backdoor Defense via Decoupling the Training Process

Model Agnostic Defence against Backdoor Attacks in Machine Learning

A Tale of Evil Twins: Adversarial Inputs versus Poisoned Models

Conference on Computer and Communications Security

AdvMind: Inferring Adversary Intent of Black-Box Attacks

TROJANZOO: Everything you ever wanted to know about neural backdoors (but were afraid to ask).

TrojanZoo: Towards Unified, Holistic, and Practical Evaluation of Neural Backdoors


A repository for the BCIO ontology

Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology

The Behaviour Change Technique Ontology: Transforming the Behaviour Change Technique Taxonomy v1

Specifying who delivers behaviour change interventions: development of an Intervention Source Ontology


Python/numba code for manipulating time-dependent functions of spin-weighted spherical harmonics on future null infinity

The SXS collaboration catalog of binary black hole simulations

Numerical relativity waveform surrogate model for generically precessing binary black hole mergers

Computation of displacement and spin gravitational memory in numerical relativity

Extending gravitational wave extraction using Weyl characteristic fields

Comparing remnant properties from horizon data and asymptotic data in numerical relativity

Fast and efficient evaluation of gravitational waveforms via reduced-order spline interpolation

Numerical simulations of black hole-neutron star mergers in scalar-tensor gravity

Numerical relativity surrogate model with memory effects and post-Newtonian hybridization

Fully relativistic three-dimensional Cauchy-characteristic matching


Spoken Language Translation System

The NiuTrans’s Submission to the IWSLT22 English-to-Chinese Offline Speech Translation Task

Proceedings of the 19th International Conference on Spoken Language Translation (IWSLT 2022)

The JHU/KyotoU Speech Translation System for IWSLT 2018

International Workshop on Spoken Language Translation

The AFRL IWSLT 2018 Systems: What Worked, What Didn’t


Software for analyzing high dimensional dose-response data

BMDExpress 2: enhanced transcriptomic dose-response analysis workflow

Assessment of developmental neurotoxicity induced by chemical mixtures using an adverse outcome pathway concept

Environmental health : a global access science source

A Modern Genotoxicity Testing Paradigm: Integration of the High-Throughput CometChip® and the TGx-DDI Transcriptomic Biomarker in Human HepaRG™ Cell Cultures

The sensitivity of transcriptomics BMD modeling to the methods used for microarray data normalization

Mining toxicogenomic data for dose-responsive pathways: implications in advancing next-generation risk assessment


EU's  Type-Approving vehicle simulator predicting NEDC CO2 emissions from WLTP


Efficient analysis of spatial biodiversity datasets for global portfolios


Complete* list of autonomous driving related datasets

Ad-datasets: A Meta-collection of Data Sets for Autonomous Driving

VEHITS: PROCEEDINGS OF THE 8TH INTERNATIONAL CONFERENCE ON VEHICLE TECHNOLOGY AND INTELLIGENT TRANSPORT SYSTEMS

Open-sourced Data Ecosystem in Autonomous Driving: the Present and
  Future

A Survey on Autonomous Driving Datasets: Data Statistic, Annotation, and
  Outlook


A tokenizer for Icelandic text

The ParlaMint corpora of parliamentary proceedings

Miðeind's WMT 2021 submission

Constructing Multimodal Language Learner Texts Using LARA: Experiences with Nine Languages

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

Facilitating Corpus Usage: Making Icelandic Corpora More Accessible for Researchers and Language Users

IceSum: An Icelandic Text Summarization Corpus

North American Chapter of the Association for Computational Linguistics

Tokenizer for Icelandic text


Public facing deeplift repo

Towards better understanding of gradient-based attribution methods for Deep Neural Networks

A unified view of gradient-based attribution methods for Deep Neural Networks

Human-grounded Evaluations of Explanation Methods for Text Classification

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

Explainable AI for Bioinformatics: Methods, Tools, and Applications

Interpreting Interpretations: Organizing Attribution Methods by Criteria

Challenges for cognitive decoding using deep learning methods

A Deep Neural Network for Gastric Cancer Prognosis Prediction Based on Biological Information Pathways

Genome Informatics 2016


R toolkit for the analysis of single-cell chromatin data

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis

Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers

Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells

Spatially mapped single-cell chromatin accessibility

Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo

A fast Myosin super enhancer dictates muscle fiber phenotype through competitive interactions with Myosin genes

Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution

Single cell functional genomics reveals plasticity of subcutaneous white adipose tissue (WAT) during early postnatal development

Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice

The journal of neuroscience/The Journal of neuroscience


Software package for neuron reconstruction and visualization

A connectome of a learning and memory center in the adult Drosophila brain

The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks

Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain

Simple integration of fast excitation and offset, delayed inhibition computes directional selectivity in Drosophila

NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction

Automatic Neuron Type Identification by Neurite Localization in the Drosophila Medulla

Large-Scale Electron Microscopy Image Segmentation in Spark

Hierarchical architecture of dopaminergic circuits enables second-order conditioning in Drosophila

Large-scale EM Analysis of the Drosophila Antennal Lobe with Automatically Computed Synapse Point Clouds


SARS-CoV-2 workflow for nanopore sequence data

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

SARS-CoV-2 Causes Severe Epithelial Inflammation and Barrier Dysfunction

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing

Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany

Emergence and Spread of a B.1.1.28-Derived P.6 Lineage with Q675H and Q677H Spike Mutations in Uruguay

Molecular epidemiology of SARS-CoV-2 - a regional to global perspective


PyTorch original implementation of Cross-lingual Language Model Pretraining.

Unsupervised Cross-lingual Representation Learning at Scale

XNLI: Evaluating Cross-lingual Sentence Representations

MASS: Masked Sequence to Sequence Pre-training for Language Generation

XTREME: A Massively Multilingual Multi-task Benchmark for Evaluating Cross-lingual Generalization

Phrase-Based & Neural Unsupervised Machine Translation

Transformers as Soft Reasoners over Language

Unsupervised Question Decomposition for Question Answering

Unsupervised Question Answering by Cloze Translation

Meeting of the Association for Computational Linguistics

Unsupervised Multilingual Alignment using Wasserstein Barycenter


Open-source implementations of OpenAI Gym MuJoCo environments for use with the OpenAI Gym Reinforcement Learning Research Platform.

Memory-based Deep Reinforcement Learning for POMDPs

Leveraging exploration in off-policy algorithms via normalizing flows

Efficient Continuous Control with Double Actors and Regularized Critics

The Effect of Multi-step Methods on Overestimation in Deep Reinforcement Learning

Optimistic Linear Support and Successor Features as a Basis for Optimal Policy Transfer

Steady State Analysis of Episodic Reinforcement Learning

Automatic Risk Adaptation in Distributional Reinforcement Learning

Risk-Aware Transfer in Reinforcement Learning using Successor Features

Exploring and Exploiting Conditioning of Reinforcement Learning Agents

What Went Wrong? Closing the Sim-to-Real Gap via Differentiable Causal
  Discovery


Algorithms for Quantitative Pedology


Trait-Driven Models of Ecology and Evolution :evergreen_tree:

plant: A package for modelling forest trait ecology and evolution


TECA, theToolkit for Extreme Climate Analysis, contains a collection of climate anlysis algorithms targetted at extreme event detection and analysis.

Detection of atmospheric rivers with inline uncertainty quantification: TECA-BARD v1.0.1


General, high performance algebraic multigrid solver

Reducing Communication in Algebraic Multigrid with Multi-step Node Aware
  Communication

Improving Performance Models for Irregular Point-to-Point Communication

Performance Analysis and Optimal Node-aware Communication for Enlarged Conjugate Gradient Methods


InternGPT (iGPT) is an open source demo platform where you can easily showcase your AI models. Now it supports DragGAN, ChatGPT, ImageBind, multimodal chat like GPT-4, SAM, interactive image editing, etc. Try it at igpt.opengvlab.com (支持DragGAN、ChatGPT、ImageBind、SAM的在线Demo系统)

VisionLLM: Large Language Model is also an Open-Ended Decoder for
  Vision-Centric Tasks

Drag Your GAN: Interactive Point-based Manipulation on the Generative Image Manifold

InternGPT: Solving Vision-Centric Tasks by Interacting with ChatGPT
  Beyond Language

Denoising Diffusion Semantic Segmentation with Mask Prior Modeling