A 13B large language model developed by Baichuan Intelligent Technology

Measuring Massive Multitask Language Understanding

RoFormer: Enhanced Transformer with Rotary Position Embedding

Train Short, Test Long: Attention with Linear Biases Enables Input Length Extrapolation

WizardMath: Empowering Mathematical Reasoning for Large Language Models via Reinforced Evol-Instruct

FinEval: A Chinese Financial Domain Knowledge Evaluation Benchmark for Large Language Models

Benchmarking Large Language Models on Controllable Generation under Diversified Instructions

ShieldLM: Empowering LLMs as Aligned, Customizable and Explainable
  Safety Detectors

A Survey on Large Language Models for Critical Societal Domains:
  Finance, Healthcare, and Law

CLEVA: Chinese Language Models EVAluation Platform

MedBench: A Large-Scale Chinese Benchmark for Evaluating Medical Large Language Models


TextBoxes++: A Single-Shot Oriented Scene Text Detector

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Text Recognition in the Wild: A Survey

Scene Text Detection in Natural Images: A Review

Pelee-Text++: A Tiny Neural Network for Scene Text Detection


Finetune Llama 3.2, Mistral, Phi & Gemma LLMs 2-5x faster with 80% less memory

Human-AI Collaborative Essay Scoring: A Dual-Process Framework with LLMs

Extending Llama-3's Context Ten-Fold Overnight

Enhancing Clinical Efficiency through LLM: Discharge Note Generation for
  Cardiac Patients

Can Large Language Models Understand Symbolic Graphics Programs?

WisPerMed at “Discharge Me!”: Advancing Text Generation in Healthcare with Large Language Models, Dynamic Expert Selection, and Priming Techniques on MIMIC-IV

Cheap Ways of Extracting Clinical Markers from Texts

Robo-Instruct: Simulator-Augmented Instruction Alignment For Finetuning CodeLLMs

WisPerMed at BioLaySumm: Adapting Autoregressive Large Language Models for Lay Summarization of Scientific Articles


RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

"Why Should I Trust You?": Explaining the Predictions of Any Classifier

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w(1118); iso-2; iso-3

On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation

Network Analysis: An Integrative Approach to the Structure of Psychopathology

ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software

A survey of best practices for RNA-seq data analysis

Peeking Inside the Black Box: Visualizing Statistical Learning With Plots of Individual Conditional Expectation

LUMPY: A probabilistic framework for structural variant discovery

Visualizing the Effects of Predictor Variables in Black Box Supervised Learning Models


InstructPix2Pix: Learning to Follow Image Editing Instructions

Instruction Tuning for Large Language Models: A Survey

InstructEdit: Improving Automatic Masks for Diffusion-based Image Editing With User Instructions

Collaborative Score Distillation for Consistent Visual Synthesis

COCO-Counterfactuals: Automatically Constructed Counterfactual Examples for Image-Text Pairs


A python package to analyze and compare voices with deep learning

Generalized End-to-End Loss for Speaker Verification

Multi-Singer: Fast Multi-Singer Singing Voice Vocoder With A Large-Scale Corpus

FragmentVC: Any-to-Any Voice Conversion by End-to-End Extracting and Fusing Fine-Grained Voice Fragments With Attention

Multimodal Emotion Recognition with High-level Speech and Text Features

Investigating on Incorporating Pretrained and Learnable Speaker Representations for Multi-Speaker Multi-Style Text-to-Speech

Improving Zero-shot Voice Style Transfer via Disentangled Representation Learning

S2VC: A Framework for Any-to-Any Voice Conversion with Self-Supervised Pretrained Representations

Gender and Age Estimation Methods Based on Speech Using Deep Neural Networks

Defending Your Voice: Adversarial Attack on Voice Conversion

Guided-TTS 2: A Diffusion Model for High-quality Adaptive Text-to-Speech with Untranscribed Data


Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences

Do Deep Learning Models Really Outperform Traditional Approaches in Molecular Docking?

Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design

Deep Confident Steps to New Pockets: Strategies for Docking Generalization.

FABind: Fast and Accurate Protein-Ligand Binding

Modeling Molecular Structures with Intrinsic Diffusion Models

A gastrointestinal locally activating Janus kinase inhibitor to treat ulcerative colitis


A PipelinE to Reduce Observations - The DRS for SPIRou (CFHT)

APERO: A PipelinE to Reduce Observations -- Demonstration with SPIRou

The SPIRou wavelength calibration for precise radial velocities in the near infrared

TOI-1759 b: A transiting sub-Neptune around a low mass star characterized with SPIRou and TESS

The SPIRou Legacy Survey Rotation period of quiet M dwarfs from circular polarization in near-infrared spectral lines: I. The SPIRou APERO analysis

Optical and near-infrared stellar activity characterization of the early M dwarf Gl 205 with SOPHIE and SPIRou


:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

DNA Features Viewer, a sequence annotations formatting and plotting library for Python

HPV Sequencing Facilitates Ultrasensitive Detection of HPV Circulating Tumor DNA

Clinical cancer research : an official journal of the American Association for Cancer Research

MinION nanopore sequencing identifies the position and structure of bacterial antibiotic resistance determinants in a multidrug-resistant strain of enteroaggregative Escherichia coli

A Bidimensional Segregation Mode Maintains Symbiont Chromosome Orientation toward Its Host

Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans

Genome mining of Lactiplantibacillus plantarum PA21: insights into its antimicrobial potential


PyTorch Implementation of BioBERT

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?

IEEE access : practical innovations, open solutions

LIQUID: A Framework for List Question Answering Dataset Generation

Simple Questions Generate Named Entity Recognition Datasets

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information

2022 IEEE International Conference on Big Data (Big Data)

Regularization for Long Named Entity Recognition

EasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text


Finder of Somatic Fusion Genes in RNA-seq data

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers

Gene fusions AHRR-NCOA2, NCOA2-ETV4, ETV4-AHRR, P4HA2-TBCK, and TBCK-P4HA2 resulting from the translocations t(5;8;17)(p15;q13;q21) and t(4;5)(q24;q31) in a soft tissue angiofibroma

Intra-tumour heterogeneity of diffuse large B-cell lymphoma involves the induction of diversified stroma-tumour interfaces

Prioritisation of structural variant calls in cancer genomes

Genome-wide transcriptome profiling of ex-vivo precision-cut slices from human pancreatic ductal adenocarcinoma

The early evolutionary landscape of osteosarcoma provides clues for targeted treatment strategies

Identification of novel cyclin gene fusion transcripts in endometrioid ovarian carcinomas

DEK-NUP214-Fusion Identified by RNA-Sequencing of an Acute Myeloid Leukemia with t(9;12)(q34;q15)

Botensilimab plus balstilimab in relapsed/refractory microsatellite stable metastatic colorectal cancer: a phase 1 trial


Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals

Multi-trait analysis of genome-wide association summary statistics using MTAG

Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits

Multiomics study of nonalcoholic fatty liver disease

Investigating the shared genetic architecture between multiple sclerosis and inflammatory bowel diseases

Enhancing Discovery of Genetic Variants for Posttraumatic Stress Disorder Through Integration of Quantitative Phenotypes and Trauma Exposure Information

A regulatory variant at 3q21.1 confers an increased pleiotropic risk for hyperglycemia and altered bone mineral density

Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis

Multitrait genome-wide analyses identify new susceptibility loci and candidate drugs to primary sclerosing cholangitis

Dissecting shared genetic architecture between obesity and multiple sclerosis


Recovering genes from targeted sequence capture data

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment1

Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae)

A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade Micranthes (Saxifragaceae)

Phylogenetic relationships of Atractylodes lancea, A. chinensis and A. macrocephala, revealed by complete plastome and nuclear gene sequences

hybpiper‐nf and paragone‐nf: Containerization and additional options for target capture assembly and paralog resolution

An updated and extended version of the Melastomataceae probe set for target capture


Gene cluster comparison figure generator

clinker & clustermap.js: automatic generation of gene cluster comparison figures

Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis

Circulating androgen regulation by androgen-catabolizing gut bacteria in male mouse gut

Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum a Candidate Beneficial Bacterium from the Human Microbiome

The CbbQO-type rubisco activases encoded in carboxysome gene clusters can activate carboxysomal form IA rubiscos

Genomic Characterization of IMP-Producing Pseudomonas aeruginosa in Bulgaria Reveals the Emergence of IMP-100, a Novel Plasmid-Mediated Variant Coexisting with a Chromosomal VIM-4

Thermophilin 13: In Silico Analysis Provides New Insight in Genes Involved in Bacteriocin Production

Comparative Analysis of L-Fucose Utilization and Its Impact on Growth and Survival of Campylobacter Isolates

A novel variant of the Listeria monocytogenes type VII secretion system EssC component is associated with an Rhs toxin


base-accurate DNA sequence alignments using WFA and mashmap3

Edlib: a C/C++ library for fast, exact sequence alignment using edit distance

A Fast Adaptive Algorithm for Computing Whole-Genome Homology Maps

Fast gap-affine pairwise alignment using the wavefront algorithm

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

Unbiased pangenome graphs

A super-pangenome of the North American wild grape species

Genomic Anatomy of Homozygous XX Females and YY Males Reveals Early Evolutionary Trajectory of Sex-determining Gene and Sex Chromosomes in Silurus Fishes


Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

The Cymbidium genome reveals the evolution of unique morphological traits

Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

bioRxiv : the preprint server for biology

Genomic analyses of rice bean landraces reveal adaptation and yield related loci to accelerate breeding

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative Phytophthora palmivora

Cepharanthine analogs mining and genomes of Stephania accelerate anti-coronavirus drug discovery

Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice

Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis

Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota)


A Bulletproof Way to Generate Structured JSON from Language Models

14 examples of how LLMs can transform materials science and chemistry: a reflection on a large language model hackathon

Spellburst: A Node-based Interface for Exploratory Creative Coding with Natural Language Prompts

Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology

LMDX: Language Model-based Document Information Extraction and Localization

SynCode: LLM Generation with Grammar Augmentation

From Text to Insight: Large Language Models for Materials Science Data Extraction


Natural Language Toolkit for Indic Languages aims to provide out of the box support for various NLP tasks that an application developer might need

IndicNLPSuite: Monolingual Corpora, Evaluation Benchmarks and Pre-trained Multilingual Language Models for Indian Languages

AI4Bharat-IndicNLP Corpus: Monolingual Corpora and Word Embeddings for Indic Languages

iNLTK: Natural Language Toolkit for Indic Languages

Proceedings of Second Workshop for NLP Open Source Software (NLP-OSS)

Is Machine Learning Speaking my Language? A Critical Look at the NLP-Pipeline Across 8 Human Languages

Spartans@LT-EDI-EACL2021: Inclusive Speech Detection using Pretrained Language Models

CodemixedNLP: An Extensible and Open NLP Toolkit for Code-Mixing

L3Cube-IndicNews: News-based Short Text and Long Document Classification Datasets in Indic Languages

A Comparative Study on Language Models for the Kannada Language

International Conference on Natural Language and Speech Processing

L3Cube-MahaNews: News-based Short Text and Long Document Classification Datasets in Marathi


The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

The genome of broomcorn millet

Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution

The celery genome sequence reveals sequential paleo-polyploidizations, karyotype evolution and resistance gene reduction in apiales

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Genomic basis of homoploid hybrid speciation within chestnut trees

High-depth resequencing reveals hybrid population and insecticide resistance characteristics of fall armyworm (Spodoptera frugiperda) invading China

Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation

The genomic and bulked segregant analysis of Curcuma alismatifolia revealed its diverse bract pigmentation

Meliaceae genomes provide insights into wood development and limonoids biosynthesis


A flexible framework for rapid genome analysis and interpretation

Mapping and characterization of structural variation in 17,795 human genomes

One-step generation of complete gene knockout mice and monkeys by CRISPR/Cas9-mediated gene editing with multiple sgRNAs

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

CRISPR/Cas9-mediated targeted chromosome elimination

NGSeasy: a next generation sequencing pipeline in Docker containers

The Fusion of CLEC12A and MIR223HG Arises from a trans-Splicing Event in Normal and Transformed Human Cells

International journal of molecular sciences

DNAscan: a fast, computationally and memory efficient bioinformatics pipeline for the analysis of DNA next-generation-sequencing data

High-depth whole-genome sequencing identifies structure variants, copy number variants and short tandem repeats associated with Parkinson’s disease


Automatically exported from code.google.com/p/figtree

raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater

medRxiv : the preprint server for health sciences

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

V367F Mutation in SARS-CoV-2 Spike RBD Emerging during the Early Transmission Phase Enhances Viral Infectivity through Increased Human ACE2 Receptor Binding Affinity

Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events

The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins

Triangulation supports agricultural spread of the Transeurasian languages

CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates


Surface Urban Energy and Water Balance Scheme


MASS: Masked Sequence to Sequence Pre-training for Language Generation

MPNet: Masked and Permuted Pre-training for Language Understanding

A Comprehensive Survey of AI-Generated Content (AIGC): A History of Generative AI from GAN to ChatGPT

Self-Attention Guided Copy Mechanism for Abstractive Summarization

Meeting of the Association for Computational Linguistics

Evaluating the Evaluation of Diversity in Natural Language Generation

GLGE: A New General Language Generation Evaluation Benchmark

Code-switching pre-training for neural machine translation

Friendly Topic Assistant for Transformer Based Abstractive Summarization

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)

Improving Readability for Automatic Speech Recognition Transcription

XL-AMR: Enabling Cross-Lingual AMR Parsing with Transfer Learning Techniques


Fast and differentiable MS-SSIM and SSIM for pytorch.

Image sensing with multilayer nonlinear optical neural networks

Heterogeneous Face Recognition via Face Synthesis With Identity-Attribute Disentanglement

IEEE Transactions on Information Forensics and Security

Targeted Attack Improves Protection against Unauthorized Diffusion Customization

HyperHyperNetworks for the Design of Antenna Arrays

What You Hear Is What You See: Audio Quality Metrics From Image Quality Metrics

Image and Video Tokenization with Binary Spherical Quantization


TorchCV: A PyTorch-Based Framework for Deep Learning in Computer Vision

Asymmetric Non-local Neural Networks for Semantic Segmentation

Semantic Flow for Fast and Accurate Scene Parsing

Spatially Adaptive Inference with Stochastic Feature Sampling and Interpolation

Data-Free Quantization with Accurate Activation Clipping and Adaptive Batch Normalization


Duke is a fast and flexible deduplication engine written in Java

PyPSA-Eur: An open optimisation model of the European transmission system

End-to-End Entity Resolution for Big Data: A Survey

Performing energy modelling exercises in a transparent way the issue of data quality in power plant databases

A survey of OpenRefine reconciliation services

Duplication Detection in Knowledge Graphs: Literature and Tools

Duplicate Detection as a Service

A Research Agenda for IOT Adaptive Architectures


Unified access to simple climate models (work in progress)

Reduced Complexity Model Intercomparison Project Phase 1: introduction and evaluation of global-mean temperature response

Silicone v1.0.0: an open-source Python package for inferring missing emissions data for climate change research

Reduced complexity model intercomparison project phase 1: Protocol, results and initial observations


Visit PixelLib's official documentation  https://pixellib.readthedocs.io/en/latest/

Mask R-CNN

Encoder-Decoder with Atrous Separable Convolution for Semantic Image Segmentation

PointRend: Image Segmentation as Rendering

Simplifying Object Segmentation with PixelLib Library

Developing a Free and Open-Source Semi-Automated Building Exterior Crack Inspection Software for Construction and Facility Managers

Deep Learning approach for Classifying Trusses and Runners of Strawberries

Automated Image Analysis for Detection of Coccidia in Poultry

Animals : an open access journal from MDPI


TextGAN is a PyTorch framework for Generative Adversarial Networks (GANs) based text generation models.

MALCOM: Generating Malicious Comments to Attack Neural Fake News Detection Models

Improving GAN Training with Probability Ratio Clipping and Sample Reweighting

DGSAN: Discrete Generative Self-Adversarial Network

Feature-aware conditional GAN for category text generation

Stochastic Parrots Looking for Stochastic Parrots: LLMs are Easy to Fine-Tune and Hard to Detect with other LLMs


File system and storage benchmark that uses a custom language to generate a large variety of workloads.

Supporting Security Sensitive Tenants in a Bare-Metal Cloud

RIO: Order-Preserving and CPU-Efficient Remote Storage Access

Proceedings of the Eighteenth European Conference on Computer Systems

DurableFS: A File System for Persistent Memory

LearnedFTL: A Learning-Based Page-Level FTL for Reducing Double Reads in Flash-Based SSDs

SCJ: Segment Cleaning Journaling for Log-Structured File Systems

Separation of Virtual Machine I/O in Cloud Systems

Magpie: Automatically Tuning Static Parameters for Distributed File Systems using Deep Reinforcement Learning

A social link based private storage cloud

International Conference on Parallel and Distributed Systems

UPSS: A Global, Least-Privileged Storage System with Stronger Security and Better Performance

Proceedings of the 10th International Conference on Information Systems Security and Privacy

I/O Transit Caching for PMem-based Block Device


VMZ: Model Zoo for Video Modeling

A Closer Look at Spatiotemporal Convolutions for Action Recognition

Video Classification with Channel-Separated Convolutional Networks

What Makes Training Multi-Modal Classification Networks Hard?

Lips Don't Lie: A Generalisable and Robust Approach to Face Forgery Detection

MDMMT: Multidomain Multimodal Transformer for Video Retrieval

MultiBench: Multiscale Benchmarks for Multimodal Representation Learning

Revisiting Classifier: Transferring Vision-Language Models for Video Recognition

FASTER Recurrent Networks for Efficient Video Classification

Are 3D convolutional networks inherently biased towards appearance?

What Matters for Ad-hoc Video Search? A Large-scale Evaluation on TRECVID


A mix of GAN implementations including progressive growing

Unsupervised Representation Learning with Deep Convolutional Generative Adversarial Networks

Progressive Growing of GANs for Improved Quality, Stability, and Variation

Conditional Image Synthesis With Auxiliary Classifier GANs

Which Training Methods for GANs do actually Converge?

Learning Causal Semantic Representation for Out-of-Distribution Prediction

GDPP: Learning Diverse Generations Using Determinantal Point Process

Evaluating the Clinical Realism of Synthetic Chest X-Rays Generated Using Progressively Growing GANs

PCA-AE: Principal Component Analysis Autoencoder for Organising the Latent Space of Generative Networks

Inspirational Adversarial Image Generation

Fractional Wavelet-Based Generative Scattering Networks


StyleFlow: Attribute-conditioned Exploration of StyleGAN-generated Images using  Conditional Continuous Normalizing Flows (ACM TOG 2021)

PointFlow: 3D Point Cloud Generation with Continuous Normalizing Flows

StyleFlow: Attribute-conditioned Exploration of StyleGAN-Generated Images using Conditional Continuous Normalizing Flows

Controllable and Compositional Generation with Latent-Space Energy-Based Models

Improving the Fairness of Deep Generative Models without Retraining

FairStyle: Debiasing StyleGAN2 with Style Channel Manipulations

GANravel: User-Driven Direction Disentanglement in Generative Adversarial Networks

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems

VoiceShop: A Unified Speech-to-Speech Framework for Identity-Preserving
  Zero-Shot Voice Editing


Python Multi-Agent Reinforcement Learning framework

QMIX: Monotonic Value Function Factorisation for Deep Multi-Agent Reinforcement Learning

The StarCraft Multi-Agent Challenge

A survey and critique of multiagent deep reinforcement learning

Learning Transferable Cooperative Behavior in Multi-Agent Teams

Learning Implicit Credit Assignment for Cooperative Multi-Agent Reinforcement Learning

UPDeT: Universal Multi-agent RL via Policy Decoupling with Transformers

Rethinking the Implementation Tricks and Monotonicity Constraint in Cooperative Multi-Agent Reinforcement Learning

Multi-Agent Incentive Communication via Decentralized Teammate Modeling

THIRTY-SIXTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FOURTH CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE / TWELVETH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Tesseract: Tensorised Actors for Multi-Agent Reinforcement Learning


A series of large language models developed by Baichuan Intelligent Technology

Measuring Massive Multitask Language Understanding

Baichuan 2: Open Large-scale Language Models

What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Exams

Skywork: A More Open Bilingual Foundation Model

Understanding LLMs: A Comprehensive Overview from Training to Inference

Improving Biomedical Abstractive Summarisation with Knowledge Aggregation from Citation Papers

AviationGPT: A Large Language Model for the Aviation Domain

CSCD-NS: a Chinese Spelling Check Dataset for Native Speakers

Train & Constrain: Phonologically Informed Tongue-Twister Generation
  from Topics and Paraphrases

PsycoLLM: Enhancing LLM for Psychological Understanding and Evaluation


State-of-the-art deep learning based audio codec supporting both mono 24 kHz audio and stereo 48 kHz audio.

High Fidelity Neural Audio Compression

Speak Foreign Languages with Your Own Voice: Cross-Lingual Neural Codec Language Modeling

NaturalSpeech 3: Zero-Shot Speech Synthesis with Factorized Codec and
  Diffusion Models

VioLA: Unified Codec Language Models for Speech Recognition, Synthesis, and Translation

HiFi-Codec: Group-residual Vector quantization for High Fidelity Audio Codec

UniAudio: An Audio Foundation Model Toward Universal Audio Generation

UniCATS: A Unified Context-Aware Text-to-Speech Framework with Contextual VQ-Diffusion and Vocoding

ELLA-V: Stable Neural Codec Language Modeling with Alignment-guided Sequence Reordering

Latent-Domain Predictive Neural Speech Coding

The VoicePrivacy 2024 Challenge Evaluation Plan


Context-sensitive ranking and choice in Python with PyTorch

Deep Architectures for Learning Context-dependent Ranking Functions

Learning context-dependent choice functions

Transformer Choice Net: A Transformer Neural Network for Choice Prediction


You Only Look Once for Panopitic Driving Perception.（MIR2022）

ENet: A Deep Neural Network Architecture for Real-Time Semantic Segmentation

MultiNet: Real-time Joint Semantic Reasoning for Autonomous Driving

YOLOP: You Only Look Once for Panoptic Driving Perception

You Only Look at Once for Real-Time and Generic Multi-Task

DisPlacing Objects: Improving Dynamic Vehicle Detection via Visual Place Recognition under Adverse Conditions


Python package for automated analysis and management of gridded climate data


GMD problem formulation for PowerModels.jl

PowerModelsDistribution.jl: An open-source framework for exploring distribution power flow formulations

Analyzing and Mitigating the Impacts of GMD and EMP Events on the Electrical Grid with PowerModelsGMD.jl

Mitigating the Impacts of Uncertain Geomagnetic Disturbances on Electric Grids: A Distributionally Robust Optimization Approach

Relaxation Based Modeling of GMD Induced Cascading Failures in PowerModelsGMD.jl

Distributionally Robust Optimization for a Resilient Transmission Grid During Geomagnetic Disturbances

Physics-informed heterogeneous graph neural networks for DC blocker placement

A Review of the GIC Blocker Placement Problem


Learning to See in the Dark. CVPR 2018

CNN-generated images are surprisingly easy to spot... for now

Seeing Motion in the Dark

International Conference on Computer Vision

Countering Malicious DeepFakes: Survey, Battleground, and Horizon

Learning to See in the Dark


DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

Epigenomic language models powered by Cerebras

DNABERT-based explainable lncRNA identification in plant genome assemblies

Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings


Code repo for "WebArena: A Realistic Web Environment for Building Autonomous Agents"

Hierarchical Prompting Assists Large Language Model on Web Navigation

AgentGym: Evolving Large Language Model-based Agents across Diverse
  Environments

WONDERBREAD: A Benchmark for Evaluating Multimodal Foundation Models on Business Process Management Tasks


GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop.

Montblanc: GPU accelerated Radio Interferometer Measurement Equations in support of Bayesian Inference for Radio Observations

Resolving the blazar CGRaBS J0809+5341 in the presence of telescope systematics

Monthly Notices of the Royal Astronomical Society

KERN

Radio galaxy shape measurement with Hamiltonian Monte Carlo in the visibility domain

Radio galaxy detection in the visibility domain


Scalable gVCF merging and joint variant calling for population sequencing projects

Accurate, scalable cohort variant calls using DeepVariant and GLnexus

GLnexus: joint variant calling for large cohort sequencing

Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

Protocol for unbiased, consolidated variant calling from whole exome sequencing data


Research Framework for Single and Multi-Players  Multi-Arms Bandits (MAB) Algorithms, implementing all the state-of-the-art algorithms for single-player (UCB, KL-UCB, Thompson...) and multi-player (MusicalChair, MEGA, rhoRand, MCTop/RandTopM etc).. Available on PyPI: https://pypi.org/project/SMPyBandits/ and documentation on

What Doubling Tricks Can and Can't Do for Multi-Armed Bandits

Multi-Player Bandits Revisited

The Generalized Likelihood Ratio Test meets klUCB: an Improved Algorithm for Piece-Wise Non-Stationary Bandits.

KL-UCB-switch: optimal regret bounds for stochastic bandits from both a distribution-dependent and a distribution-free viewpoints

Decentralized spectrum learning for radio collision mitigation in ultra-dense IoT networks: LoRaWAN case study and experiments

contextual: Evaluating Contextual Multi-Armed Bandit Problems in R

Decentralized Spectrum Learning for IoT Wireless Networks Collision Mitigation

Efficient Training of Multi-task Combinarotial Neural Solver with Multi-armed Bandits

Multi-Armed Bandits in Brain-Computer Interfaces

Multi-armed Bandit Algorithm against Strategic Replication


Open Data su consegna e somministrazione dei vaccini anti COVID-19 in Italia - Commissario straordinario per l'emergenza Covid-19

The effect of mandatory COVID-19 certificates on vaccine uptake: synthetic-control modelling of six countries

The effect of COVID-19 vaccination in Italy and perspectives for living with the virus

Rapid displacement of SARS-CoV-2 variant Delta by Omicron revealed by allele-specific PCR in wastewater

Estimating averted COVID-19 cases, hospitalisations, intensive care unit admissions and deaths by COVID-19 vaccination, Italy, January-September 2021.

What Is the Willingness to Receive Vaccination Against COVID-19 Among the Elderly in Italy? Data From the PASSI d'Argento Surveillance System

Homophily impacts the success of vaccine roll-outs

Modelling the COVID-19 epidemic and the vaccination campaign in Italy by the SUIHTER model

Switched forced SEIRDV compartmental models to monitor COVID-19 spread and immunization in Italy

Impact of antigen test target failure and testing strategies on the transmission of SARS-CoV-2 variants

Perceived risk and vaccine hesitancy: Quasi‐experimental evidence from Italy


Appraise code used as part of WMT21 human evaluation campaign

Findings of the 2020 Conference on Machine Translation (WMT20)

Empirical Methods in Natural Language Processing

Findings of the IWSLT 2022 Evaluation Campaign

Proceedings of the 19th International Conference on Spoken Language Translation (IWSLT 2022)

Findings of the Second WMT Shared Task on Sign Language Translation (WMT-SLT23)

Proceedings of the Eighth Conference on Machine Translation

A Benchmark for Evaluating Machine Translation Metrics on Dialects without Standard Orthography


PDF to XML ALTO file converter

The Semantic Scholar Open Data Platform

VILA: Improving Structured Content Extraction from Scientific PDFs Using Visual Layout Groups

FormulaNet: A Benchmark Dataset for Mathematical Formula Detection

Multimodal Machine Learning for Extraction of Theorems and Proofs in the Scientific Literature

Noisy and Unbalanced Multimodal Document Classification: Textbook Exercises as a Use Case

International Conference on Content-Based Multimedia Indexing

KIETA: Key-insight extraction from scientific tables


Chinese-Vicuna: A Chinese Instruction-following LLaMA-based Model —— 一个中文低资源的llama+lora方案，结构参考alpaca

LLaMA: Open and Efficient Foundation Language Models

LoRA: Low-Rank Adaptation of Large Language Models

Self-Instruct: Aligning Language Models with Self-Generated Instructions

GPT Can Solve Mathematical Problems Without a Calculator

LLaMA-Reviewer: Advancing Code Review Automation with Large Language Models through Parameter-Efficient Fine-Tuning

Examining User-Friendly and Open-Sourced Large GPT Models: A Survey on Language, Multimodal, and Scientific GPT Models

Navigating the Landscape of Large Language Models: A Comprehensive
  Review and Analysis of Paradigms and Fine-Tuning Strategies


RISC-V Formal Verification Framework

Snitch: A Tiny Pseudo Dual-Issue Processor for Area and Energy Efficient Execution of Floating-Point Intensive Workloads

Advanced virtual prototyping for cyber-physical systems using RISC-V: implementation, verification and challenges

Randomized Testing of RISC-V CPUs Using Direct Instruction Injection

Synthesizing Hardware-Software Leakage Contracts for RISC-V Open-Source Processors


Basic sanity checks for MOFs.

An Extended Charge Equilibration Method.

The journal of physical chemistry letters

MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Connecting lab experiments with computer experiments: Making "routine" simulations routine

Discovery of Novel Reticular Materials for Carbon Dioxide Capture using GFlowNets


Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

Segment Anything for Microscopy

Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings

Structured Prediction Problem Archive

ViM-UNet: Vision Mamba for Biomedical Segmentation


Platypus Variant Caller

Detection of early seeding of Richter transformation in chronic lymphocytic leukemia

Whole-genome sequencing of spermatocytic tumors provides insights into the mutational processes operating in the male germline

Interactions between genetics and environment shape Camelina seed oil composition

Computer Architecture-Aware Optimisation of DNA Analysis Systems


Implementation of Sequence Generative Adversarial Nets with Policy Gradient

SeqGAN: Sequence Generative Adversarial Nets with Policy Gradient

Adversarial Ranking for Language Generation

Toward Diverse Text Generation with Inverse Reinforcement Learning

Jointly Measuring Diversity and Quality in Text Generation Models

Generative adversarial networks in time series: A survey and taxonomy

Code-switched Language Models Using Dual RNNs and Same-Source Pretraining

Nominal Metaphor Generation with Multitask Learning

CM-Gen: A Neural Framework for Chinese Metaphor Generation with Explicit Context Modelling

International Conference on Computational Linguistics


Clustering scRNAseq by genotypes

Spatial multiomics map of trophoblast development in early pregnancy

Yolk sac cell atlas reveals multiorgan functions during human early development

Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology

bioRxiv : the preprint server for biology

Single-Cell Dissection of the Immune Response After Acute Myocardial Infarction

Evaluation of genetic demultiplexing of single-cell sequencing data from model species

hadge: a comprehensive pipeline for donor deconvolution in single cell


A fast parallel implementation of RNN Transducer.

Speech Recognition with Deep Recurrent Neural Networks

Sequence Transduction with Recurrent Neural Networks

A New Training Pipeline for an Improved Neural Transducer

Librispeech Transducer Model with Internal Language Model Prior Correction

Neural Transducer Training: Reduced Memory Consumption with Sample-Wise Computation


:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool for Genome-wide Association Study

基因组蛋白质组与生物信息学报

Genome-Wide Association Study Reveals Novel Genomic Regions for Grain Yield and Yield-Related Traits in Drought-Stressed Synthetic Hexaploid Wheat

International journal of molecular sciences

Trait associations in the pangenome of pigeon pea (Cajanus cajan)

Genome-Wide Association Study Reveals Novel Genomic Regions Associated with 10 Grain Minerals in Synthetic Hexaploid Wheat

Genome-Wide Association Studies for Pasmo Resistance in Flax (Linum usitatissimum L.)

A large nested association mapping population for breeding and quantitative trait locus mapping in Ethiopian durum wheat

Detection of First Marker Trait Associations for Resistance Against Sclerotinia sclerotiorum in Brassica juncea–Erucastrum cardaminoides Introgression Lines

Molecular and genetic analysis of defensive responses of Brassica juncea – B. fruticulosa introgression lines to Sclerotinia infection

Genome-Wide Association Study for Multiple Biotic Stress Resistance in Synthetic Hexaploid Wheat

Genome-wide association study for yield and yield related traits under reproductive stage drought in a diverse indica-aus rice panel


A 3D electromagnetic FDTD simulator written in Python with optional GPU support

Clifford Neural Layers for PDE Modeling

Simultaneous estimation of wall and object parameters in TWR using deep neural network

NIDN: Neural Inverse Design of Nanostructures

Through-the-Wall Radar under Electromagnetic Complex Wall: A Deep Learning Approach


Open source FPGA-based NIC and platform for in-network compute

SimBricks

SIGCOMM '22: PROCEEDINGS OF THE 2022 ACM SIGCOMM 2022 CONFERENCE

Enabling End-to-End Simulation for Host Networking Evaluation using SimBricks


Efficient Image Captioning code in Torch, runs on GPU

Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

International Journal of Computer Vision

What can the brain teach us about building artificial intelligence?

Towards Diverse and Natural Image Descriptions via a Conditional GAN

Diverse Beam Search: Decoding Diverse Solutions from Neural Sequence Models

Regularizing Deep Neural Networks by Noise: Its Interpretation and Optimization

Diverse and Accurate Image Description Using a Variational Auto-Encoder with an Additive Gaussian Encoding Space

Context-aware Captions from Context-agnostic Supervision

An Empirical Study of Language CNN for Image Captioning

Attacking Visual Language Grounding with Adversarial Examples: A Case Study on Neural Image Captioning

BreakingNews: Article Annotation by Image and Text Processing


MELT - Matching EvaLuation Toolkit

MELT - Matching EvaLuation Toolkit

OLaLa: Ontology Matching with Large Language Models

Proceedings of the 12th Knowledge Capture Conference 2023

Visual Analysis of Ontology Matching Results with the MELT Dashboard

Supervised Ontology and Instance Matching with MELT

Matching with Transformers in MELT

Background Knowledge in Schema Matching: Strategy vs. Data

Order Matters: Matching Multiple Knowledge Graphs

PROCEEDINGS OF THE 11TH KNOWLEDGE CAPTURE CONFERENCE (K-CAP '21)

FinMatcher at FinSim-2: Hypernym Detection in the Financial Services Domain using Knowledge Graphs

KERMIT - A Transformer-Based Approach for Knowledge Graph Matching


Unofficial implementation of Image Super-Resolution via Iterative Refinement by Pytorch

Come-Closer-Diffuse-Faster: Accelerating Conditional Diffusion Models for Inverse Problems through Stochastic Contraction

DifFace: Blind Face Restoration with Diffused Error Contraction

Conffusion: Confidence Intervals for Diffusion Models

Pyramidal Denoising Diffusion Probabilistic Models


Implementations of Reinforcement Learning and Planning algorithms

B-GAP: Behavior-Rich Simulation and Navigation for Autonomous Driving

Budgeted Reinforcement Learning in Continuous State Space

Building Safer Autonomous Agents by Leveraging Risky Driving Behavior Knowledge

International Conference on Communications, Computing, Cybersecurity, and Informatics

Explaining Reinforcement Learning Agents Through Counterfactual Action Outcomes

Decision Making for Autonomous Driving in Interactive Merge Scenarios via Learning-based Prediction


A little tool to play with Windows security

Industrial and Critical Infrastructure Security: Technical Analysis of Real-Life Security Incidents

Leveraging Operational Technology and the Internet of Things to Attack Smart Buildings

The Sorry State of TLS Security in Enterprise Interception Appliances

SoK: A Survey of Open-Source Threat Emulators

Decomposition and sequential-AND analysis of known cyber-attacks on critical infrastructure control systems

The epidemiology of lateral movement: exposures and countermeasures with network contagion models

Building Machine Learning-based Threat Hunting System from Scratch

Evaluation of Local Security Event Management System vs. Standard Antivirus Software

Hypervisor-Based Active Data Protection for Integrity and Confidentiality of Dynamically Allocated Memory in Windows Kernel

Security Analysis and Bypass User Authentication Bound to Device of Windows Hello in the Wild


Synthesizing and manipulating 2048x1024 images with conditional GANs

High-Resolution Image Synthesis and Semantic Manipulation with Conditional GANs

StyleGAN2 Distillation for Feed-forward Image Manipulation

Quantitative Projection Coverage for Testing ML-enabled Autonomous Systems

MetaPix: Few-Shot Video Retargeting

ControlStyle: Text-Driven Stylized Image Generation Using Diffusion Priors

PTNet: A High-Resolution Infant MRI Synthesizer Based on Transformer

Physics-informed GANs for Coastal Flood Visualization

Generating Physically-Consistent Satellite Imagery for Climate Visualizations

Bridging the Gap Between Paired and Unpaired Medical Image Translation

Boosting EfficientNets Ensemble Performance via Pseudo-Labels and Synthetic Images by pix2pixHD for Infection and Ischaemia Classification in Diabetic Foot Ulcers


[CVPR 2023] Official implementation of the paper "Mask DINO: Towards A Unified Transformer-based Framework for Object Detection and Segmentation"

DINO: DETR with Improved DeNoising Anchor Boxes for End-to-End Object Detection

DN-DETR: Accelerate DETR Training by Introducing Query DeNoising

Segmentation of stroke lesions using transformers-augmented MRI analysis


The repository for the Sustainable Development Goals Interface Ontology

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance

Deep learning based multi-label text classification of UNGA resolutions

International Conference on Theory and Practice of Electronic Governance

Ontologies for geospatial information: Progress and challenges ahead


Prodigal Gene Prediction Software

Prevotella copri increases fat accumulation in pigs fed with formula diets

A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families

A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism

Machine learning for metagenomics: methods and tools

Characterization of phage resistance and phages capable of intestinal decolonization of carbapenem-resistant Klebsiella pneumoniae in mice

Alterations of Gut Microbiome and Metabolite Profiling in Mice Infected by Schistosoma japonicum

Lactic Acid Bacteria Diversity and Characterization of Probiotic Candidates in Fermented Meats

A Method for Improving the Accuracy and Efficiency of Bacteriophage Genome Annotation

Maternally inherited piRNAs direct transient heterochromatin formation at active transposons during early Drosophila embryogenesis


Mummer alignment tool

A chromosome-level draft genome of the grain aphid Sitobion miscanthi

The genome of Nautilus pompilius illuminates eye evolution and biomineralization

Analysis of an improved Cyanophora paradoxa genome assembly

DNA research : an international journal for rapid publication of reports on genes and genomes

Construction of Pseudomolecules for the Chinese Chestnut (Castanea mollissima) Genome

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

Tracking the Distribution of Brucella abortus in Egypt Based on Core Genome SNP Analysis and In Silico MLVA-16

Campylobacter bacteriophage DA10: an excised temperate bacteriophage targeted by CRISPR-cas

Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

A gap-free reference genome reveals structural variations associated with flowering time in rapeseed (Brassica napus)


nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

nnDetection: A Self-configuring Method for Medical Object Detection

Evaluating Large-Vocabulary Object Detectors: The Devil is in the Details

Deep learning – promises for 3D nuclear imaging: a guide for biologists

AI-Supported Comprehensive Detection and Quantification of Biomarkers of Subclinical Widespread Diseases at Chest CT for Preventive Medicine

BugNIST -- A New Large Scale Volumetric 3D Image Dataset for Classification and Detection


A Very Low-Bitrate Codec for Speech Compression

Efficient Neural Audio Synthesis

SoundStream: An End-to-End Neural Audio Codec

High Fidelity Neural Audio Compression

Wavenet based low rate speech coding

Generative Speech Coding with Predictive Variance Regularization

End-to-End Neural Speech Coding for Real-Time Communications

Latent-Domain Predictive Neural Speech Coding

Language-Codec: Reducing the Gaps Between Discrete Codec Representation
  and Speech Language Models

CQNV: A combination of coarsely quantized bitstream and neural vocoder for low rate speech coding

An Intra-BRNN and GB-RVQ Based END-TO-END Neural Audio Codec


RoutingKit is a C++ library that provides advanced route planning functionality.

Scalable and Congestion-aware Routing for Autonomous Mobility-on-Demand via Frank-Wolfe Optimization

Faster and Better Nested Dissection Orders for Customizable Contraction Hierarchies

Efficient Route Planning with Temporary Driving Bans, Road Closures, and Rated Parking Areas

Simulating the Impact of Dynamic Rerouting on Metropolitan-scale Traffic Systems

Fast, Exact and Scalable Dynamic Ridesharing

More Hierarchy in Route Planning Using Edge Hierarchies

A Fast and Tight Heuristic for A* in Road Networks

Fast Many-to-Many Routing for Ridesharing with Multiple Pickup and Dropoff Locations

Nearest-Neighbor Queries in Customizable Contraction Hierarchies and Applications

Efficient Non-Learning Similar Subtrajectory Search


Quality control, filtering, feature labeling, and other tools for working with data from photovoltaic energy systems.

Generation of Data-Driven Expected Energy Models for Photovoltaic Systems


The project is an official implementation of our CVPR2019 paper "Deep High-Resolution Representation Learning for Human Pose Estimation"

Deep High-Resolution Representation Learning for Visual Recognition

High-Resolution Representations for Labeling Pixels and Regions

Distribution-Aware Coordinate Representation for Human Pose Estimation

The Devil is in the Details: Delving into Unbiased Data Processing for Human Pose Estimation

Whole-Body Human Pose Estimation in the Wild

A Survey of Deep Learning for Scientific Discovery

When Human Pose Estimation Meets Robustness: Adversarial Algorithms and Benchmarks

Simple and Lightweight Human Pose Estimation

COMPOSER: Compositional Reasoning of Group Activity in Videos with Keypoint-Only Modality


a MUSHRA compliant web audio API based experiment software

StoRM: A Diffusion-Based Stochastic Regeneration Model for Speech Enhancement and Dereverberation

Speaking Style Conversion in the Waveform Domain Using Discrete Self-Supervised Units

Audio Editing with Non-Rigid Text Prompts

On the Use of Autoregressive Methods for Audio Inpainting

An Independence-promoting Loss for Music Generation with Language Models


Model summary in PyTorch similar to `model.summary()` in Keras

DiCyc: GAN-based deformation invariant cross-domain information fusion for medical image synthesis

Srifty: Swift and Thrifty Distributed Training on the Cloud

FMD-cGAN: Fast Motion Deblurring using Conditional Generative Adversarial Networks

Memory-adaptive Depth-wise Heterogenous Federated Learning

Reusing Convolutional Neural Network Models through Modularization and Composition

Doppler Spectrum Classification with CNNs via Heatmap Location Encoding and a Multi-head Output Layer


Read coverage calculator for metagenomics

SARS-CoV-2 RNA monitoring in wastewater as a potential early warning system for COVID-19 transmission in the community: A temporal case study

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

Detection of SARS-CoV-2 RNA in commercial passenger aircraft and cruise ship wastewater: a surveillance tool for assessing the presence of COVID-19 infected travellers

Identification of mobile genetic elements with geNomad

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)

Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

A catalogue of 1,167 genomes from the human gut archaeome

Wildfire-dependent changes in soil microbiome diversity and function

Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep

Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes

Probiotics synergized with conventional regimen in managing Parkinson’s disease


Connect suppliers, distributors and consumers to trade local produce.


An API to retrieve and read NFL Game Center JSON data. It can work with real-time data, which can be used for fantasy football.

Fantasy Football Prediction

The Anatomy of American Football: Evidence from 7 Years of NFL Game Data

iWinRNFL: A Simple, Interpretable & Well-Calibrated In-Game Win Probability Model for NFL

NFL Play Prediction


Software interfaces for interacting with brain atlases - Python client

Brain simulation as a cloud service: The Virtual Brain on EBRAINS

Cytoarchitecture, intersubject variability, and 3D mapping of four new areas of the human anterior prefrontal cortex

Cytoarchitectonic Maps of the Human Metathalamus in 3D Space


Evaluation of language models on mono- or multilingual tasks.

ScandEval: A Benchmark for Scandinavian Natural Language Processing

Danish Foundation Models

Encoder vs Decoder: Comparative Analysis of Encoder and Decoder Language Models on Multilingual NLU Tasks


An ontology of core ecological entities

FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies


PDF GPT allows you to chat with the contents of your PDF file by using GPT capabilities. The most effective open source solution to turn your pdf files in a chatbot!

AviationGPT: A Large Language Model for the Aviation Domain

Mixture-of-LoRAs: An Efficient Multitask Tuning for Large Language
  Models

CHOPS: CHat with custOmer Profile Systems for Customer Service with LLMs

AI Literature Review Suite


Produces persistent, respawning "super" cookies in a browser, abusing over a dozen techniques. Its goal is to identify users after they've removed standard cookies and other privacy data such as Flash cookies (LSOs), HTML5 storage, SilverLight storage, and others.

Web Runner 2049: Evaluating Third-Party Anti-bot Services

Mobile IMUs Reveal Driver's Identity From Vehicle Turns

Taming The Shape Shifter: Detecting Anti-fingerprinting Browsers


Auton Survival -  an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

Deep Survival Machines: Fully Parametric Survival Regression and Representation Learning for Censored Data with Competing Risks

Deep Cox Mixtures for Survival Regression

Counterfactual Phenotyping with Censored Time-to-Events

Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining

auton-survival: an Open-Source Package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Event Data

Neural Fine-Gray: Monotonic neural networks for competing risks


A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage

A mini foxtail millet with an Arabidopsis-like life cycle as a C4 model system

A high-quality reference genome of wild Cannabis sativa

Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm

High-quality genome assembly of 'Cuiguan' pear (Pyrus pyrifolia) as a reference genome for identifying regulatory genes and epigenetic modifications responsible for bud dormancy

A chromosome-level genome assembly for the beet armyworm (Spodoptera exigua) using PacBio and Hi-C sequencing

Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm

Frontiers in cellular and infection microbiology

A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola)

The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes)

A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data


A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.

Unfold: an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis

Decoding EEG Brain Activity for Multi-Modal Natural Language Processing

Neural dynamics of sentiment processing during naturalistic sentence reading


cytofkit: an integrated flow/mass cytometry data analysis pipeline

High-Dimensional Single-Cell Quantitative Profiling of Skeletal Muscle Cell Population Dynamics during Regeneration

Granzyme B PET Imaging of Combined Chemotherapy and Immune Checkpoint Inhibitor Therapy in Colon Cancer

Imaging Kv1.3 Expressing Memory T Cells as a Marker of Immunotherapy Response

Inflammatory bone marrow signaling in pediatric acute myeloid leukemia distinguishes patients with poor outcomes

Using ICLite for deconvolution of bulk transcriptional data from mixed cell populations

In vivo single-cell high-dimensional mass cytometry analysis to track the interactions between Klebsiella pneumoniae and myeloid cells


Komondor Wireless Networks Simulator

Wi-Fi Meets ML: A Survey on Improving IEEE 802.11 Performance With Machine Learning

Dynamic Channel Bonding in Spatially Distributed High-Density WLANs

Potential and pitfalls of Multi-Armed Bandits for decentralized Spatial Reuse in WLANs

Journal of Network and Computer Applications

Spatial Reuse in IEEE 802.11ax WLANs

To overlap or not to overlap: Enabling Channel Bonding in High-Density WLANs

Komondor: a Wireless Network Simulator for Next-Generation High-Density WLANs

Usage of Network Simulators in Machine-Learning-Assisted 5G/6G Networks

On the Performance of the Spatial Reuse Operation in IEEE 802.11ax WLANs

Machine Learning for Performance Prediction of Channel Bonding in Next-Generation IEEE 802.11 WLANs

Experimental Evaluation of Interactive Edge/Cloud Virtual Reality Gaming
  over Wi-Fi using Unity Render Streaming


:city_sunrise: The Urban Weather Generator (uwg) is a Python application for modeling the urban heat island effect.


Library for multivariate function approximation with splines (B-spline, P-spline, and more) with interfaces to C++, C, Python and MATLAB

The matter power spectrum in redshift space using effective field theory

Journal of Cosmology and Astroparticle Physics

CppTransport: a platform to automate calculation of inflationary correlation functions

De-localizing brittle fracture

Journal of the Mechanics and Physics of Solids

New techniques for jet calibration with the ATLAS detector

Mathematical programming formulations for piecewise polynomial functions

The Object Oriented c++ library QIBSH++ for Hermite spline Quasi Interpolation

A reduced-order model for segregated fluid-structure interaction solvers based on an ALE approach


LuCI - OpenWrt Configuration Interface

Injection Attacks Reloaded: Tunnelling Malicious Payloads over DNS

Feature-Sniffer: Enabling IoT Forensics in OpenWrt based Wi-Fi Access Points

HALE-IoT: Hardening Legacy Internet of Things Devices by Retrofitting Defensive Firmware Modifications and Implants


An R package that assists with the setup and operation of a collection of soil data summary, comparison, and evaluation reports. These reports are primarily used by USDA-NRCS soil scientists in both initial and update mapping.


The repository containing tools and information about the WoodScape dataset.

WoodScape: A multi-task, multi-camera fisheye dataset for autonomous driving

OmniDet: Surround View Cameras based Multi-task Visual Perception Network for Autonomous Driving

Let's Get Dirty: GAN Based Data Augmentation for Camera Lens Soiling Detection in Autonomous Driving

SVDistNet: Self-Supervised Near-Field Distance Estimation on Surround View Fisheye Cameras

Let's Get Dirty: GAN Based Data Augmentation for Soiling and Adverse Weather Classification in Autonomous Driving.

Surround-View Cameras based Holistic Visual Perception for Automated Driving


A set of Cartesian controllers for the ROS1 and ROS2-control framework.

Learning Human-Inspired Force Strategies for Robotic Assembly

Learning Variable Compliance Control From a Few Demonstrations for Bimanual Robot with Haptic Feedback Teleoperation System

SliceIt! -- A Dual Simulator Framework for Learning Robot Food Slicing


Python library for analysis of neuroanatomical data.

FlyWire: Online community for whole-brain connectomics

The natverse, a versatile toolbox for combining and analysing neuroanatomical data

Neuronal wiring diagram of an adult brain

Information flow, cell types and stereotypy in a full olfactory connectome

Context-dependent representations of movement in Drosophila dopaminergic reinforcement pathways

Multisensory learning binds neurons into a cross-modal memory engram

Interactions between specialized gain control mechanisms in olfactory processing

Multisensory learning binds modality-specific neurons into a cross-modal memory engram


Distributed, Versioned, Image-oriented Dataservice

A connectome of a learning and memory center in the adult Drosophila brain

TDat: An Efficient Platform for Processing Petabyte-Scale Whole-Brain Volumetric Images

NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction

DVID: Distributed Versioned Image-Oriented Dataservice

The Brain Observatory Storage Service and Database (BossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery

Analyzing Image Segmentation for Connectomics

Large-Scale Electron Microscopy Image Segmentation in Spark

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling

Large-scale EM Analysis of the Drosophila Antennal Lobe with Automatically Computed Synapse Point Clouds


ADDA - light scattering simulator based on the discrete dipole approximation

Scaling Laws for Light Absorption Enhancement Due to Nonrefractory Coating of Atmospheric Black Carbon Aerosol

Near-field radiative heat transfer between irregularly shaped dielectric particles modeled with the discrete system Green's function method

Vector Bessel beams: General classification and scattering simulations

Optical backscattering and linear polarization properties of the colony forming cyanobacterium Microcystis

Optimization Methods for In-Line Holography

Capabilities of ADDA code for nanophotonics


A curated list of reproducible research case studies, projects, tutorials, and media

1,500 scientists lift the lid on reproducibility

Believe it or not: how much can we rely on published data on potential drug targets?

Evaluating the replicability of social science experiments in Nature and Science between 2010 and 2015

The Economics of Reproducibility in Preclinical Research

Variability in the analysis of a single neuroimaging dataset by many teams

Many Analysts, One Data Set: Making Transparent How Variations in Analytic Choices Affect Results

Advances in Methods and Practices in Psychological Science

The generalizability crisis

Open science challenges, benefits and tips in early career and beyond

Reproducible Research Practices and Transparency across the Biomedical Literature

What is replication?


ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Genome Assembly of Alfalfa Cultivar Zhongmu-4 and Identification of SNPs Associated with Agronomic Traits

基因组蛋白质组与生物信息学报

Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics

A gap-free reference genome reveals structural variations associated with flowering time in rapeseed (Brassica napus)

A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis

A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895)

Chromosome-level Genome Assembly of the High-altitude Leopard (Panthera pardus) Sheds Light on Its Environmental Adaptation

Chromosome genome assembly and whole genome sequencing of 110 individuals of Conogethes punctiferalis (Guenée)


The GitHub repository for the paper "Informer" accepted by AAAI 2021.

Informer: Beyond Efficient Transformer for Long Sequence Time-Series Forecasting

TS2Vec: Towards Universal Representation of Time Series

TCCT: Tightly-coupled convolutional transformer on time series forecasting

PromptCast: A New Prompt-based Learning Paradigm for Time Series Forecasting

The Capacity and Robustness Trade-off: Revisiting the Channel Independent Strategy for Multivariate Time Series Forecasting

Dish-TS: A General Paradigm for Alleviating Distribution Shift in Time Series Forecasting

A Survey on Time-Series Pre-Trained Models

Ti-MAE: Self-Supervised Masked Time Series Autoencoders

Online Metro Origin-Destination Prediction via Heterogeneous Information Aggregation

FormerTime: Hierarchical Multi-Scale Representations for Multivariate Time Series Classification


Training models for basecalling Oxford Nanopore reads

Latest techniques to study DNA methylation

Recent advances in the detection of base modifications using the Nanopore sequencer

Nanopore Base Calling on the Edge

Dynamic Pooling Improves Nanopore Base Calling Accuracy

RNA dataset generated by Taiyaki

Zenodo (CERN European Organization for Nuclear Research)


Spatial Sparse Convolution Library

Superpoint Transformer for 3D Scene Instance Segmentation

D3Net: A Unified Speaker-Listener Architecture for 3D Dense Captioning and Visual Grounding

Robo3D: Towards Robust and Reliable 3D Perception against Corruptions

Green Hierarchical Vision Transformer for Masked Image Modeling

Towards Efficient 3D Object Detection with Knowledge Distillation

PonderV2: Pave the Way for 3D Foundation Model with A Universal Pre-training Paradigm

Deep Learning of Preconditioners for Conjugate Gradient Solvers in Urban Water Related Problems

MarS3D: A Plug-and-Play Motion-Aware Model for Semantic Segmentation on Multi-Scan 3D Point Clouds

StereoVoxelNet: Real-Time Obstacle Detection Based on Occupancy Voxels from a Stereo Camera Using Deep Neural Networks

TorchSparse++: Efficient Training and Inference Framework for Sparse Convolution on GPUs


Make huge neural nets fit in memory

Training Deep Nets with Sublinear Memory Cost

Memory-Efficient Backpropagation Through Time

i-flow: High-dimensional Integration and Sampling with Normalizing Flows

Machine Learning: Science and Technology

A Practical Survey on Faster and Lighter Transformers

Echo: Compiler-based GPU Memory Footprint Reduction for LSTM RNN Training

Automatic Segmentation of Pulmonary Lobes Using a Progressive Dense V-Network

Fast and Accurate 3D Medical Image Segmentation with Data-swapping Method

FetusMap: Fetal Pose Estimation in 3D Ultrasound

Full-Glow: Fully conditional Glow for more realistic image generation


Transcription, forced alignment, and audio indexing with OpenAI's Whisper

Large Language Models are Efficient Learners of Noise-Robust Speech Recognition


Large-scale open domain KNOwledge grounded conVERsation system based on PaddlePaddle

PLATO-2: Towards Building an Open-Domain Chatbot via Curriculum Learning

PLATO-XL: Exploring the Large-scale Pre-training of Dialogue Generation

"How Robust r u?": Evaluating Task-Oriented Dialogue Systems on Spoken Conversations

Learning to Select External Knowledge With Multi-Scale Negative Sampling

Amendable Generation for Dialogue State Tracking

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

PLATO-KAG: Unsupervised Knowledge-Grounded Conversation via Joint Modeling

Proceedings of the 3rd Workshop on Natural Language Processing for Conversational AI

TOD-DA: Towards Boosting the Robustness of Task-oriented Dialogue Modeling on Spoken Conversations

Towards Boosting the Open-Domain Chatbot with Human Feedback

CDConv: A Benchmark for Contradiction Detection in Chinese Conversations


n2p2 - A Neural Network Potential Package

Predicting oxidation and spin states by high-dimensional neural networks: Applications to lithium manganese oxide spinels

Ab initio structure and thermodynamics of the RPBE-D3 water/vapor interface by neural-network molecular dynamics.

Closing the gap between theory and experiment for lithium manganese oxide spinels using a high-dimensional neural network potential

Insights into lithium manganese oxide-water interfaces using machine learning potentials.

Phonon-Induced Localization of Excitons in Molecular Crystals from First Principles.

Improved description of atomic environments using low-cost polynomial functions with compact support

Implementing a neural network interatomic model with performance portability for emerging exascale architectures

Natural aging and vacancy trapping in Al-6xxx


a Deep Learning Framework for Text https://delft.readthedocs.io/

A Benchmark of PDF Information Extraction Tools Using a Multi-task and Multi-domain Evaluation Framework for Academic Documents

Delayed Combination of Feature Embedding in Bidirectional LSTM CRF for NER

Automatic extraction of materials and properties from superconductors scientific literature

Science and Technology of Advanced Materials: Methods

Amsqr at SemEval-2020 Task 12: Offensive Language Detection Using Neural Networks and Anti-adversarial Features

International Workshop on Semantic Evaluation

The Kairntech Sherpa – An ML Platform and API for the Enrichment of (not only) Scientific Content

Semi-automatic staging area for high-quality structured data extraction from scientific literature


Audio fingerprinting and recognition in Python

Advancing Audio Fingerprinting Accuracy with AI and ML: Addressing Background Noise and Distortion Challenges

Audio-based Near-Duplicate Video Retrieval with Audio Similarity Learning

Sonus Texere! Automated Dense Soundtrack Construction for Books using Movie Adaptations

Accuracy comparisons of fingerprint based song recognition approaches using very high granularity


Bidirectional LSTM-CRF and ELMo for Named-Entity Recognition, Part-of-Speech Tagging and so on.

Deep contextualized word representations

Neural Architectures for Named Entity Recognition

Ludwig: a type-based declarative deep learning toolbox

Aspect and Opinion Terms Extraction Using Double Embeddings and Attention Mechanism for Indonesian Hotel Reviews

Domain adaptation for part-of-speech tagging of noisy user-generated text

A Lightweight Recurrent Network for Sequence Modeling

PheneBank: a literature-based database of phenotypes


Particle-resolved stochastic atmospheric aerosol model

Chemistry Across Multiple Phases (CAMP) version 1.0: An integrated multi-phase chemistry model


Convolutional Neural Networks

YOLOv4: Optimal Speed and Accuracy of Object Detection

YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors

Objects as Points

DOTA: A Large-scale Dataset for Object Detection in Aerial Images

Fooling automated surveillance cameras: adversarial patches to attack person detection

MetaAnchor: Learning to Detect Objects with Customized Anchors

Practices and Applications of Convolutional Neural Network-Based Computer Vision Systems in Animal Farming: A Review

R^3-Net: A Deep Network for Multi-oriented Vehicle Detection in Aerial Images and Videos

IEEE Transactions on Geoscience and Remote Sensing

Detection of Cardiac Structural Abnormalities in Fetal Ultrasound Videos Using Deep Learning

Efficient disease detection in gastrointestinal videos – global features versus neural networks


all kinds of text classification models and more with deep learning

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Neural Machine Translation by Jointly Learning to Align and Translate

Bag of Tricks for Efficient Text Classification

A Sensitivity Analysis of (and Practitioners' Guide to) Convolutional Neural Networks for Sentence Classification

FRAGE: Frequency-Agnostic Word Representation

Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation


A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

Genetic comorbidity between major depression and cardio‐metabolic traits, stratified by age at onset of major depression

Carolina Digital Repository (University of North Carolina at Chapel Hill)

Multivariate genetic analysis of personality and cognitive traits reveals abundant pleiotropy

Associations and limited shared genetic aetiology between bipolar disorder and cardiometabolic traits in the UK Biobank

The power of pathway-based polygenic risk scores

The genomics of childhood eating behaviours

Phenotypic Associations and Shared Genetic Etiology between Bipolar Disorder and Cardiometabolic Traits

Topic modeling identifies novel genetic loci associated with multimorbidities in UK Biobank

Genome-wide association study in 404,302 individuals identifies 7 significant loci for reaction time variability

medRxiv : the preprint server for health sciences


Flops counter for convolutional networks in pytorch framework

Green AI

Intriguing Findings of Frequency Selection for Image Deblurring

PRGC: Potential Relation and Global Correspondence Based Joint Relational Triple Extraction

Less Is More: Fast Multivariate Time Series Forecasting with Light Sampling-oriented MLP Structures

Deep Gradient Learning for Efficient Camouflaged Object Detection

WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

DiCyc: GAN-based deformation invariant cross-domain information fusion for medical image synthesis

Diffusion Probabilistic Model Made Slim

TF-GridNet: Integrating Full- and Sub-Band Modeling for Speech Separation

Sandglasset: A Light Multi-Granularity Self-attentive Network For Time-Domain Speech Separation


Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:

[18F]FDG PET signal is driven by astroglial glutamate transport

Subcortical Shape Changes, Hippocampal Atrophy and Cortical Thinning in Future Alzheimer's Disease Patients

Neuroanatomy in mouse models of Rett syndrome is related to the severity of Mecp2 mutation and behavioral phenotypes

Neuroanatomical and Symptomatic Sex Differences in Individuals at Clinical High Risk for Psychosis

Personality disorder symptomatology is associated with anomalies in striatal and prefrontal morphology

Habenular Involvement in Response to Subcallosal Cingulate Deep Brain Stimulation for Depression

Brain Structures and Networks Underlying Treatment Response to Deep Brain Stimulation Targeting the Inferior Thalamic Peduncle in Obsessive-Compulsive Disorder

Stereotactic and functional neurosurgery

MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses

Bilateral Amygdala Radio-Frequency Ablation for Refractory Aggressive Behavior Alters Local Cortical Thickness to a Pattern Found in Non-refractory Patients

A Functional Connectome of Parkinson's Disease Patients Prior to Deep Brain Stimulation: A Tool for Disease-Specific Connectivity Analyses


Latex code for making neural networks diagrams

On Circuit-Based Hybrid Quantum Neural Networks for Remote Sensing Imagery Classification

CNN-Based Tree Species Classification Using High Resolution RGB Image Data from Automated UAV Observations

Robotic Table Tennis with Model-Free Reinforcement Learning

Prediction of wall-bounded turbulence from wall quantities using convolutional neural networks

Radial Basis Function Networks for Convolutional Neural Networks to Learn Similarity Distance Metric and Improve Interpretability

FN-OCT: Disease Detection Algorithm for Retinal Optical Coherence Tomography Based on a Fusion Network

deepBlink: threshold-independent detection and localization of diffraction-limited spots

Dispersal inference from population genetic variation using a convolutional neural network

Deep Complex Networks for Protocol-Agnostic Radio Frequency Device Fingerprinting in the Wild

Learning to Play the Chess Variant Crazyhouse Above World Champion Level With Deep Neural Networks and Human Data


software for UCE (and general) phylogenomics

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

PHYLUCE is a software package for the analysis of conserved genomic loci

Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics

A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing

Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics.

Enriching the ant tree of life: enhanced UCE bait set for genome-scale phylogenetics of ants and other Hymenoptera

Identifying conserved genomic elements and designing universal bait sets to enrich them


just annotate it, dammit!

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic–pituitary–gonadal (HPG) axis

Streamlining data-intensive biology with workflow systems

Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury

Transcriptomic Evidence for Reproductive Suppression in Male Peromyscus eremicus (Cactus Mouse) Subjected to Acute Dehydration

The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia

Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size

Comparative Genomics of Color Morphs In the Coral Montastraea cavernosa

RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification

Characterizing the Adult and Larval Transcriptome of the Multicolored Asian Lady Beetle, Harmonia axyridis


Submanifold sparse convolutional networks

SECOND: Sparsely Embedded Convolutional Detection

3D Semantic Segmentation with Submanifold Sparse Convolutional Networks

Fractional Max-Pooling

Spatially-sparse convolutional neural networks

Sparse 3D convolutional neural networks

Multi-view PointNet for 3D Scene Understanding

MASC: Multi-scale Affinity with Sparse Convolution for 3D Instance Segmentation

Point Transformer V3: Simpler, Faster, Stronger

Large-Scale 3D Shape Reconstruction and Segmentation from ShapeNet Core55


A library for federated learning (a distributed machine learning process) in an enterprise environment.

IBM Federated Learning: an Enterprise Framework White Paper V0.1

Federated Learning for Healthcare Domain - Pipeline, Applications and Challenges

ACM Transactions on Computing for Healthcare

Architectural Patterns for the Design of Federated Learning Systems

FLoRA: Single-shot Hyper-parameter Optimization for Federated Learning

Deepfakes, Phrenology, Surveillance, and More! A Taxonomy of AI Privacy Risks

Adaptive Aggregation For Federated Learning

FLRA: A Reference Architecture for Federated Learning Systems

Single-shot Hyper-parameter Optimization for Federated Learning: A General Algorithm & Analysis

Intrusion Detection based on Federated Learning: a systematic review

FLIPS: Federated Learning using Intelligent Participant Selection


BLOCKBENCH: A Framework for Analyzing Private Blockchains. Blockbench contains workloads for measuring the data processing performance, and workloads for understanding the performance of different layers of Blockchain systems.

Multilayer Environment and Toolchain for Holistic NetwOrk Design and Analysis

An End-to-End Performance Comparison of Seven Permissioned Blockchain Systems

Proceedings of the 24th International Middleware Conference on ZZZ


A GPU-accelerated TSDF and ESDF library for robots equipped with RGB-D cameras.

Obstacle avoidance using Raycasting and Riemannian Motion Policies at kHz rates for MAVs

cuRobo: Parallelized Collision-Free Minimum-Jerk Robot Motion Generation

nvblox: GPU-Accelerated Incremental Signed Distance Field Mapping

Incremental Multimodal Surface Mapping via Self-Organizing Gaussian Mixture Models

Online and Certifiably Correct Visual Odometry and Mapping


Mamba SSM architecture

Mamba: Linear-Time Sequence Modeling with Selective State Spaces

Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Duality

xLSTM: Extended Long Short-Term Memory

MambaByte: Token-free Selective State Space Model

ZigMa: A DiT-style Zigzag Mamba Diffusion Model

Decision Mamba: Reinforcement Learning via Sequence Modeling with
  Selective State Spaces

StableSSM: Alleviating the Curse of Memory in State-space Models through Stable Reparameterization

SWIFT:A Scalable lightWeight Infrastructure for Fine-Tuning

RankMamba: Benchmarking Mamba's Document Ranking Performance in the Era of Transformers

Understanding the differences in Foundation Models: Attention, State Space Models, and Recurrent Neural Networks


An R-package designed for climate and weather data analysis, empirical-statistical downscaling, and visualisation.

On using principal components to represent stations in empirical–statistical downscaling

Tellus A: Dynamic Meteorology and Oceanography

A Hybrid Downscaling Approach for Future Temperature and Precipitation Change

Journal of Applied Meteorology and Climatology

Testing a simple formula for calculating approximate intensity-duration-frequency curves

A Norwegian Approach to Downscaling

Downscaling probability of long heatwaves based on seasonal mean daily maximum temperatures

Advances in statistical climatology, meteorology and oceanography


Perceptual Quality Estimator for speech and audio

High Fidelity Neural Audio Compression

ViSQOL v3: An Open Source Production Ready Objective Speech and Audio Metric

UniAudio: An Audio Foundation Model Toward Universal Audio Generation

Objective Measures of Perceptual Audio Quality Reviewed: An Evaluation of Their Application Domain Dependence

IEEE/ACM Transactions on Audio, Speech, and Language Processing

Can You See Me Now? A Measurement Study of Zoom, Webex, and Meet

PROCEEDINGS OF THE 2021 ACM INTERNET MEASUREMENT CONFERENCE, IMC 2021

Assessment of QoE for Video and Audio in WebRTC Applications Using Full-Reference Models

From Discrete Tokens to High-Fidelity Audio Using Multi-Band Diffusion

APCodec: A Neural Audio Codec with Parallel Amplitude and Phase Spectrum
  Encoding and Decoding

Perceptual Evaluation of 360 Audiovisual Quality and Machine Learning Predictions

InSE-NET: A Perceptually Coded Audio Quality Model based on CNN


ChatGLM2-6B: An Open Bilingual Chat LLM | 开源双语对话语言模型

Chain-of-Thought Prompting Elicits Reasoning in Large Language Models

GLM: General Language Model Pretraining with Autoregressive Blank Infilling

GLM-130B: An Open Bilingual Pre-trained Model

Instruction Tuning for Large Language Models: A Survey

Zero-Shot Information Extraction via Chatting with ChatGPT

TrustLLM: Trustworthiness in Large Language Models

L-Eval: Instituting Standardized Evaluation for Long Context Language Models

RoleLLM: Benchmarking, Eliciting, and Enhancing Role-Playing Abilities of Large Language Models

MetaTool Benchmark for Large Language Models: Deciding Whether to Use Tools and Which to Use

GPT Can Solve Mathematical Problems Without a Calculator


This is an official implementation for "Swin Transformer: Hierarchical Vision Transformer using Shifted Windows".

Swin Transformer V2: Scaling Up Capacity and Resolution

Local Relation Networks for Image Recognition

Focal Self-attention for Local-Global Interactions in Vision Transformers

HTS-AT: A Hierarchical Token-Semantic Audio Transformer for Sound Classification and Detection

Efficient Self-supervised Vision Transformers for Representation Learning

Self-Supervised Learning with Swin Transformers

Efficient Training of Visual Transformers with Small Datasets

Tutel: Adaptive Mixture-of-Experts at Scale

Vision Transformers with Patch Diversification


A MNIST-like fashion product database. Benchmark :point_down:

Fashion-MNIST: a Novel Image Dataset for Benchmarking Machine Learning Algorithms

Client Selection for Federated Learning with Heterogeneous Resources in Mobile Edge

International Conference on Communications

Overcoming catastrophic forgetting with hard attention to the task

Learning from Noisy Labels with Deep Neural Networks: A Survey

Evolving Deep Convolutional Neural Networks for Image Classification

Deep Learning for Classical Japanese Literature

Deep Learning for Case-Based Reasoning through Prototypes: A Neural Network that Explains Its Predictions

Inference Suboptimality in Variational Autoencoders

The Anisotropic Noise in Stochastic Gradient Descent: Its Behavior of Escaping from Sharp Minima and Regularization Effects

Making deep neural networks right for the right scientific reasons by interacting with their explanations


Precision HLA typing from next-generation sequencing data

Genomic Features of Response to Combination Immunotherapy in Patients with Advanced Non-Small-Cell Lung Cancer

OptiType: precision HLA typing from next-generation sequencing data

Longitudinal molecular trajectories of diffuse glioma in adults

Genomic analyses of hair from Ludwig van Beethoven

Extensive pedigrees reveal the social organization of a Neolithic community

An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer

Computational cancer neoantigen prediction: current status and recent advances

Investigations of sequencing data and sample type on HLA class Ia typing with different computational tools

Detecting pathogenic variants in autoimmune diseases using high‐throughput sequencing

HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort


An open-source microcontroller system based on RISC-V

LO-FAT: Low-Overhead Control Flow ATtestation in Hardware

PROCEEDINGS OF THE 2017 54TH ACM/EDAC/IEEE DESIGN AUTOMATION CONFERENCE (DAC)

RISQ-V: Tightly Coupled RISC-V Accelerators for Post-Quantum Cryptography

IACR Transactions on Cryptographic Hardware and Embedded Systems

Sponge-Based Control-Flow Protection for IoT Devices

A Pragmatic Methodology for Blind Hardware Trojan Insertion in Finalized Layouts

Proceedings of the 41st IEEE/ACM International Conference on Computer-Aided Design

Pointing in the Right Direction - Securing Memory Accesses in a Faulty World

Asia-Pacific Computer Systems Architecture Conference


:zap: :aquarius: Rapid prokaryotic genome annotation

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Cooperative Recognition of Internationally Disseminated Ceftriaxone-Resistant Neisseria gonorrhoeae Strain.

Rapid evolution of bacterial mutualism in the plant rhizosphere

Synergy and oxygen adaptation for development of next-generation probiotics

INSaFLU: an automated open web-based bioinformatics suite “from-reads” for influenza whole-genome-sequencing-based surveillance

Brasilianoids A–F, New Meroterpenoids From the Sponge-Associated Fungus Penicillium brasilianum

Beneficial Chromosomal Integration of the Genes for CTX-M Extended-Spectrum β-Lactamase in Klebsiella pneumoniae for Stable Propagation

The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study

The Journal of antimicrobial chemotherapy

Prospective study on human fecal carriage of Enterobacteriaceae possessing mcr-1 and mcr-2 genes in a regional hospital in Hong Kong

Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation


Bolt is a deep learning library with high performance and heterogeneous flexibility.

Recurrent Bilinear Optimization for Binary Neural Networks

BiFSMNv2: Pushing Binary Neural Networks for Keyword Spotting to Real-Network Performance

IDa-Det: An Information Discrepancy-aware Distillation for 1-bit Detectors

Resilient Binary Neural Network

Binary Neural Networks as a general-propose compute paradigm for on-device computer vision

DCP-NAS: Discrepant Child-Parent Neural Architecture Search for 1-bit CNNs

Binarizing by Classification: Is Soft Function Really Necessary?

HW-TSC’s Participation in the WMT 2021 Efficiency Shared Task


Algorithms for Quantitative Pedology


hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

The human gut virome: composition, colonization, interactions, and impacts on human health

No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study

Hecatomb: an integrated software platform for viral metagenomics


Text recognition (optical character recognition) with deep learning methods, ICCV 2019

What Is Wrong With Scene Text Recognition Model Comparisons? Dataset and Model Analysis

Text Recognition in the Wild: A Survey

SCATTER: Selective Context Attentional Scene Text Recognizer

TextOCR: Towards large-scale end-to-end reasoning for arbitrary-shaped scene text

What If We Only Use Real Datasets for Scene Text Recognition? Toward Scene Text Recognition With Fewer Labels

SynthTIGER: Synthetic Text Image GEneratoR Towards Better Text Recognition Models

Exploring Stroke-Level Modifications for Scene Text Editing

Out-of-Vocabulary Challenge Report

COO: Comic Onomatopoeia Dataset for Recognizing Arbitrary or Truncated Texts

RewriteNet: Reliable Scene Text Editing with Implicit Decomposition of Text Contents and Styles


Brunel Visualization

Data2Vis: Automatic Generation of Data Visualizations Using Sequence to Sequence Recurrent Neural Networks

On the State of Computing in Statistics Education: Tools for Learning and for Doing

VegaProf: Profiling Vega Visualizations


Python wrapper of Android uiautomator test tool.

Fill in the Blank: Context-aware Automated Text Input Generation for Mobile GUI Testing

Make LLM a Testing Expert: Bringing Human-like Interaction to Mobile GUI Testing via Functionality-aware Decisions

Chatting with GPT-3 for Zero-Shot Human-Like Mobile Automated GUI Testing

Large Language Model-Based Agents for Software Engineering: A Survey

Unblind Text Inputs: Predicting Hint-text of Text Input in Mobile Apps via LLM

Proceedings of the CHI Conference on Human Factors in Computing Systems

Large Language Models for Mobile GUI Text Input Generation: An Empirical
  Study

Vision-driven Automated Mobile GUI Testing via Multimodal Large Language
  Model


libcmaes is a multithreaded C++11 library with Python bindings for high performance blackbox stochastic optimization using the CMA-ES algorithm for Covariance Matrix Adaptation Evolution Strategy

Strong first order electroweak phase transition in the CP-conserving 2HDM revisited

Black-Box Data-efficient Policy Search for Robotics

MoG-VQE: Multiobjective genetic variational quantum eigensolver

BSMPT (Beyond the Standard Model Phase Transitions): A tool for the electroweak phase transition in extended Higgs sectors

RegARD: Symmetry-Based Coarse Registration of Smartphone's Colorful Point Clouds with CAD Drawings for Low-Cost Digital Twin Buildings

A novel JEAnS analysis of the Fornax dwarf using evolutionary algorithms: mass follows light with signs of an off-centre merger

Monthly Notices of the Royal Astronomical Society

Multi-objective Model-based Policy Search for Data-efficient Learning with Sparse Rewards

Morpho Evolution With Learning Using a Controller Archive as an Inheritance Mechanism

Learning to Race through Coordinate Descent Bayesian Optimisation

International Conference on Robotics and Automation

Evolutionary strategy for inverse charge measurements of dielectric particles


Evaluate layer and volume potentials accurately. Solve integral equations.

Optimization of fast algorithms for global Quadrature by Expansion using target-specific expansions

Simulation of Multiscale Hydrophobic Lipid Dynamics via Efficient Integral Equation Methods

High-order finite element–integral equation coupling on embedded meshes

Adjoint-based control of three dimensional Stokes droplets


Sparse matrix tools extending scipy.sparse, but with incompatible licenses

The NANOGrav 11 yr Data Set: Limits on Gravitational Wave Memory

HybridSVD: When Collaborative Information is Not Enough

RECSYS 2019: 13TH ACM CONFERENCE ON RECOMMENDER SYSTEMS

Approximation of Hermitian Matrices by Positive Semidefinite Matrices using Modified Cholesky Decompositions

A New Method for the Reconstruction of Strongly Lensed Galaxies with Resolved Kinematics


A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

Attention Is All You Need

Decision Transformer: Reinforcement Learning via Sequence Modeling

Offline Reinforcement Learning as One Big Sequence Modeling Problem

Bailando: 3D Dance Generation by Actor-Critic GPT with Choreographic Memory

Towards Revealing the Mystery behind Chain of Thought: A Theoretical Perspective

Transformers are Sample-Efficient World Models

Inductive Biases and Variable Creation in Self-Attention Mechanisms

Broken Neural Scaling Laws

Preference Fine-Tuning of LLMs Should Leverage Suboptimal, On-Policy
  Data

Q-learning Decision Transformer: Leveraging Dynamic Programming for Conditional Sequence Modelling in Offline RL


The official repo of Qwen-VL (通义千问-VL) chat & pretrained large vision language model proposed by Alibaba Cloud.

LoRA: Low-Rank Adaptation of Large Language Models

QLoRA: Efficient Finetuning of Quantized LLMs

Qwen-VL: A Versatile Vision-Language Model for Understanding, Localization, Text Reading, and Beyond

Multimodal ArXiv: A Dataset for Improving Scientific Comprehension of
  Large Vision-Language Models

Safety of Multimodal Large Language Models on Images and Text

PhD: A Prompted Visual Hallucination Evaluation Dataset

VLKEB: A Large Vision-Language Model Knowledge Editing Benchmark

Debiasing Multimodal Large Language Models

Multimodal Task Vectors Enable Many-Shot Multimodal In-Context Learning


Python and C library for source extraction and photometry

Strong dependence of Type Ia supernova standardization on the local specific star formation rate

The Lyman Continuum Escape Survey: Ionizing Radiation from [O iii]-strong Sources at a Redshift of 3.1

Fully automated integral field spectrograph pipeline for the SEDMachine: pysedm

scarlet: Source separation in multi-band images by Constrained Matrix Factorization

AN EXTREME STARBURST IN THE CORE OF A RICH GALAXY CLUSTER AT z=1.7

Using Surface Brightness Fluctuations to Study Nearby Satellite Galaxy Systems: Calibration and Methodology

Using Surface Brightness Fluctuations to Study nearby Satellite Galaxy Systems: The Complete Satellite System of M101

Testing the Presence of Multiple Photometric Components in Nearby Early-type Galaxies Using SDSS

Accuracy of environmental tracers and consequence for determining the Type Ia Supernovae magnitude step.

Machine learning on difference image analysis: A comparison of methods for transient detection


From Entropy to Information: Biased Typewriters and the Origin of Life

Does self-replication imply evolvability?

Spatial resource heterogeneity creates local hotspots of evolutionary potential

Origin of life in a digital microcosm

Amorphous Fortress: Observing Emergent Behavior in Multi-Agent FSMs

How the footprint of history shapes the evolution of digital organisms


A distributed graph deep learning framework.

Graph Neural Networks: A Review of Methods and Applications

Deep Learning on Graphs: A Survey

Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph Neural Networks

HyGCN: A GCN Accelerator with Hybrid Architecture

DistDGL: Distributed Graph Neural Network Training for Billion-Scale Graphs

IntentGC: a Scalable Graph Convolution Framework Fusing Heterogeneous Information for Recommendation

EnGN: A High-Throughput and Energy-Efficient Accelerator for Large Graph Neural Networks

Automated Machine Learning on Graphs: A Survey

BGL: GPU-Efficient GNN Training by Optimizing Graph Data I/O and Preprocessing

Graph Intention Network for Click-through Rate Prediction in Sponsored Search


First-principles statistical mechanical software for the study of multi-component crystalline solids

Machine learning materials physics: Integrable deep neural networks enable scale bridging by learning free energy functions

Computer Methods in Applied Mechanics and Engineering

Prediction of structure and cation ordering in an ordered normal-inverse double spinel

PRISMS-PF: A general framework for phase-field modeling with a matrix-free finite element method

Comparing crystal structures with symmetry and geometry

Prediction of the Al-rich part of the Al-Cu phase diagram using cluster expansion and statistical mechanics

Scale bridging materials physics: Active learning workflows and integrable deep neural networks for free energy function representations in alloys

Kinetic Monte Carlo simulations of vacancy diffusion in non-dilute Ni-X (X=Re,W,Ta) alloys

Intercalation Chemistry of the Disordered Rocksalt Li3V2O5 Anode from Cluster Expansions and Machine Learning Interatomic Potentials

First-principles analysis of precipitation in Mg-Zn alloys

Unlocking the origin of compositional fluctuations in InGaN light emitting diodes