The S-Space repsitory, from the AIrhead-Research group

Recent Trends in Deep Learning Based Natural Language Processing

Exploring Topic Coherence over Many Models and Many Topics

Empirical Methods in Natural Language Processing

Unsupervised Modeling of Topical Relevance in L2 Learner Text

Workshop on Innovative Use of NLP for Building Educational Applications

An Evaluation of Graded Sense Disambiguation using Word Sense Induction

Joint Conference on Lexical and Computational Semantics

Topical Phrase Extraction from Clinical Reports by Incorporating both Local and Global Context

Semantically Motivated Hebrew Verb-Noun Multi-Word Expressions Identification

International Conference on Computational Linguistics


The add-on "Carbonalyser" allows to visualize the electricity consumption and greenhouse gases (GHG) emissions that your Internet browsing leads to.


The third major version of the MUltiScale Coupling Library and Environment

Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model

VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Easing Multiscale Model Design and Coupling with MUSCLE 3

Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit

Building a turbulence-transport workflow incorporating uncertainty quantification for predicting core profiles in a tokamak plasma


TCR and BCR assembly from RNA-seq data

TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data

Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data


A text generation benchmarking platform

Texygen: A Benchmarking Platform for Text Generation Models

PlotMachines: Outline-Conditioned Generation with Dynamic Plot State Tracking

Text Data Augmentation Made Simple By Leveraging NLP Cloud APIs

Jointly Measuring Diversity and Quality in Text Generation Models

Towards Controllable and Personalized Review Generation

Latent Code and Text-based Generative Adversarial Networks for Soft-text Generation

Tailoring Language Generation Models under Total Variation Distance

DGSAN: Discrete Generative Self-Adversarial Network

Generative Adversarial Nets for Information Retrieval: Fundamentals and Advances

Sequence Generation with Guider Network


OmegaFold Release Code

xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein

The transformative power of transformers in protein structure prediction

Proceedings of the National Academy of Sciences of the United States of America

Updated Phylogeny and Protein Structure Predictions Revise the Hypothesis on the Origin of MADS-box Transcription Factors in Land Plants

Machine Learning-based Modeling of Olfactory Receptors in their Inactive State: Human OR51E2 as a Case Study


MT3: Multi-Task Multitrack Music Transcription

Multi-instrument Music Synthesis with Spectrogram Diffusion

Multitrack Music Transcription with a Time-Frequency Perceiver

Jointist: Simultaneous Improvement of Multi-instrument Transcription and Music Source Separation via Joint Training

Onsets and Velocities: Affordable Real-Time Piano Transcription Using Convolutional Neural Networks


Racmacs R package for performing antigenic cartography

Immune evasion, infectivity, and fusogenicity of SARS-CoV-2 BA.2.86 and FLip variants

Deep immunological imprinting due to the ancestral spike in the current bivalent COVID-19 vaccine

Bivalent COVID-19 mRNA booster vaccination (BA.1 or BA.4/BA.5) increases neutralization of matched Omicron variants

Distinct patterns of SARS-CoV-2 BA.2.87.1 and JN.1 variants in immune evasion, antigenicity, and cell-cell fusion

Characteristics of JN.1-derived SARS-CoV-2 subvariants SLip, FLiRT, and KP.2 in neutralization escape, infectivity and membrane fusion

Emergent variant modeling of the serological repertoire to norovirus in young children


Square’s meticulous HTTP client for the JVM, Android, and GraalVM.

What Makes a Good Commit Message?

Proceedings of the 44th International Conference on Software Engineering

Refactoring Graphs: Assessing Refactoring over Time

Security Header Fields in HTTP Clients

A Novel Refactoring and Semantic Aware Abstract Syntax Tree Differencing
  Tool and a Benchmark for Evaluating the Accuracy of Diff Tools

Verifying Semantic Conflict-Freedom in Three-Way Program Merges

Device-centric Federated Analytics At Ease

Relationships between design problem agglomerations and concerns having types and domains of software as transverse dimensions

Journal of the Brazilian Computer Society


alignment to variation graph inducer

Unbiased pangenome graphs

Computational graph pangenomics: a tutorial on data structures and their applications

StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs


Astronomy and Astrophysics - Near infrared spectroscopy and star-formation histories of 3 ≤ z ≤ 4 quiescent galaxies

Evidence for GN-z11 as a luminous galaxy at redshift 10.957

An Extremely Massive Quiescent Galaxy at z = 3.493: Evidence of Insufficiently Rapid Quenching Mechanisms in Theoretical Models*

The Massive Ancient Galaxies at z > 3 NEar-infrared (MAGAZ3NE) Survey: Confirmation of Extremely Rapid Star Formation and Quenching Timescales for Massive Galaxies in the Early Universe

ZFIRE: GALAXY CLUSTER KINEMATICS, H alpha STAR FORMATION RATES, AND GAS PHASE METALLICITIES OF XMM-LSS J02182-05102 AT z(cl)=1.6233

Spectroscopic Confirmation of a Protocluster at z = 3.37 with a High Fraction of Quiescent Galaxies

The Early Phases of Supernova 2020pni: Shock Ionization of the Nitrogen-enriched Circumstellar Material

Predicting Ly alpha Emission from Galaxies via Empirical Markers of Production and Escape in the KBSS

A possible bright ultraviolet flash from a galaxy at redshift z ≈ 11

Revisiting the gas kinematics in SSA22 Lyman-α Blob 1 with radiative transfer modelling in a multiphase, clumpy medium

Monthly notices of the Royal Astronomical Society


Electricity monitoring library - install in Arduino IDE's libraries folder then restart the IDE


Easy to use extractive text summarization with BERT

Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks

Leveraging BERT for Extractive Text Summarization on Lectures

DepressionNet: A Novel Summarization Boosted Deep Framework for Depression Detection on Social Media

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

Connecting the Dots Between Fact Verification and Fake News Detection

ConceptEVA: Concept-Based Interactive Exploration and Customization of Document Summaries

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems

Quantifying the Suicidal Tendency on Social Media: A Survey

Nutri-bullets: Summarizing Health Studies by Composing Segments

Shaping Political Discourse using multi-source News Summarization


Bayesian inference in HSMMs and HMMs

Driving Style Analysis Using Primitive Driving Patterns With Bayesian Nonparametric Approaches

Bayesian Nonparametric Hidden Semi-Markov Models

Sniff-synchronized, gradient-guided olfactory search by freely moving mice

Segmenting accelerometer data from daily life with unsupervised machine learning

Unsupervised Incremental Learning and Prediction of Music Signals

IEEE/ACM Transactions on Audio, Speech, and Language Processing

Temporally-Reweighted Chinese Restaurant Process Mixtures for Clustering, Imputing, and Forecasting Multivariate Time Series


ATP Tennis Rankings, Results, and Stats

Neural Networks and Betting Strategies for Tennis

Pairwise Comparisons with Flexible Time-Dynamics

The paradox of talent: How chance affects success in tennis tournaments

Early Career Wins and Tournament Prestige Characterize Tennis Players' Trajectories


An Efficient Lexical Analyzer for Chinese

SECaps: A Sequence Enhanced Capsule Model for Charge Prediction

VCWE: Visual Character-Enhanced Word Embeddings

NE–LP: Normalized entropy- and loss prediction-based sampling for active learning in Chinese word segmentation on EHRs

Recurrent Attention for Neural Machine Translation

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing

Discussion on Bilingual Cognition in International Exchange Activities

Constructing Uyghur Name Entity Recognition System using Neural Machine Translation Tag Projection


A Simple Multi-Modality Transfer Learning Baseline for Sign Language Translation

Two-Stream Network for Sign Language Recognition and Translation

Natural Language-Assisted Sign Language Recognition

CiCo: Domain-Aware Sign Language Retrieval via Cross-Lingual Contrastive Learning

Conditional Variational Autoencoder for Sign Language Translation with Cross-Modal Alignment

Towards Online Continuous Sign Language Recognition and Translation

A Simple Baseline for Spoken Language to Sign Language Translation with 3D Avatars


Extreme weather detection and characterization

TempestExtremes: a framework for scale-insensitive pointwise feature tracking on unstructured grids

TempestExtremes v2.1: a community framework for feature detection, tracking, and analysis in large datasets

Assessing sensitivities in algorithmic detection of tropical cyclones in climate data

GenCast: Diffusion-based ensemble forecasting for medium-range weather

Evaluation of a unique approach to high-resolution climate modeling using the Model for Prediction Across Scales – Atmosphere (MPAS-A) version 5.1

TempestExtremes v1.0: A Framework for Scale-Insensitive Pointwise Feature Tracking on Unstructured Grids

An Assessment of Nonhydrostatic and Hydrostatic Dynamical Cores at Seasonal Time Scales in the Energy Exascale Earth System Model (E3SM)

Journal of Advances in Modeling Earth Systems

A Comparative Study Between Regional Atmospheric Model Simulations Coupled and Uncoupled to a Regional Ocean Model of the Indian Summer Monsoon

Connecting Large‐Scale Meteorological Patterns to Extratropical Cyclones in CMIP6 Climate Models Using Self‐Organizing Maps


MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is a facility instrument designed for the 10.4m GTC telescope in La Palma (Spain).

The 60 pc Environment of FRB 20180916B

NGC 7469 as seen by MEGARA: new results from high-resolution IFU spectroscopy

TXS 2116−077: A Gamma-Ray Emitting Relativistic Jet Hosted in a Galaxy Merger

MEGARA-GTC stellar spectral library – II. MEGASTAR first release

Monthly Notices of the Royal Astronomical Society

Spatially-resolved properties of the ionized gas in the HII galaxy J084220+115000


Caffe implementation of Google MobileNet SSD detection network, with pretrained weights on VOC0712 and mAP=0.727.

Optimizing the Trade-off between Single-Stage and Two-Stage Object Detectors using Image Difficulty Prediction

Tiny-DSOD: Lightweight Object Detection for Resource-Restricted Usages

UAV Framework for Autonomous Onboard Navigation and People/Object Detection in Cluttered Indoor Environments

The art and practice of data science pipelines

Con-Pi: A Distributed Container-Based Edge and Fog Computing Framework

Cluster Pruning: An Efficient Filter Pruning Method for Edge AI Vision Applications

IEEE Journal on Selected Topics in Signal Processing

Drone-Based Autonomous Motion Planning System for Outdoor Environments under Object Detection Uncertainty

A Care Robot with Ethical Sensing System for Older Adults at Home

Reducing Object Detection Uncertainty from RGB and Thermal Data for UAV Outdoor Surveillance

A Room Monitoring System Using Deep Learning and Perspective Correction Techniques


A library for Multilingual Unsupervised or Supervised word Embeddings

Exploiting Similarities among Languages for Machine Translation

Word Translation Without Parallel Data

Unsupervised Machine Translation Using Monolingual Corpora Only

A Survey Of Cross-lingual Word Embedding Models

Offline bilingual word vectors, orthogonal transformations and the inverted softmax

Improving zero-shot learning by mitigating the hubness problem

Unsupervised Alignment of Embeddings with Wasserstein Procrustes

Contrastive Learning for Many-to-many Multilingual Neural Machine Translation

Deep Learning Models for Multilingual Hate Speech Detection

GLUECoS : An Evaluation Benchmark for Code-Switched NLP


Web application to manage plants


Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

Deciphering the Multi-Chromosomal Mitochondrial Genome of Populus simonii

Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome

The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis

ntLink: a toolkit for de novo genome assembly scaffolding and mapping using long reads

De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids

DNA research : an international journal for rapid publication of reports on genes and genomes

MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution

Chromosome-level genome assembly of Amomum tsao-ko provides insights into the biosynthesis of flavor compounds

High-quality genome assembly of Metaphire vulgaris

Complete genome sequences and comparative secretomic analysis for the industrially cultivated edible mushroom Lyophyllum decastes reveals insights on evolution and lignocellulose degradation potential


Code for our EMNLP 2023 Paper: "LLM-Adapters: An Adapter Family for Parameter-Efficient Fine-Tuning of Large Language Models"

Astraios: Parameter-Efficient Instruction Tuning Code Large Language Models

Shears: Unstructured Sparsity with Neural Low-rank Adapter Search

RoseLoRA: Row and Column-wise Sparse Low-rank Adaptation of Pre-trained Language Model for Knowledge Editing and Fine-tuning

SVFT: Parameter-Efficient Fine-Tuning with Singular Vectors


This includes the original implementation of SELF-RAG: Learning to Retrieve, Generate and Critique through self-reflection by Akari Asai, Zeqiu Wu, Yizhong Wang, Avirup Sil, and Hannaneh Hajishirzi.

Self-RAG: Learning to Retrieve, Generate, and Critique through Self-Reflection

Improving medical reasoning through retrieval and self-reflection with retrieval-augmented large language models


An R package for accessing elevation data

Global field observations of tree die-off reveal hotter-drought fingerprint for Earth’s forests

A Generalizable and Accessible Approach to Machine Learning with Global Satellite Imagery

Sampling related individuals within ponds biases estimates of population structure in a pond‐breeding amphibian

Auxiliary-task learning for geographic data with autoregressive embeddings

MacroSheds: a synthesis of long-term biogeochemical, hydroclimatic, and geospatial data from small watershed ecosystem studies

The ozone climate penalty, NAAQS attainment, and health equity along the Colorado Front Range

Journal of exposure science & environmental epidemiology

Thermal stress jeopardizes carbonate production of coral reefs across the western and central Pacific Ocean

Landscape Genetic Connectivity and Evidence for Recombination in the North American Population of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans

Integrative systematic revision of a new genus of Eumolpinae (Coleoptera: Chrysomelidae) endemic to New Caledonia: Dematotrichus gen. nov. and its numerous new hairy species

Analysis of intrinsic evolutionary factors leading to microendemic distributions in New Caledonian leaf beetles


An R package  making it easy to query, preview, download and preprocess multiple kinds of spatial data  via R. All beta.

Mammals adjust diel activity across gradients of urbanization

A Machine Learning Based Downscaling Approach to Produce High Spatio-Temporal Resolution Land Surface Temperature of the Antarctic Dry Valleys from MODIS Data


The Replica Dataset v1 as published in https://arxiv.org/abs/1906.05797 .

The Replica Dataset: A Digital Replica of Indoor Spaces

Habitat-Matterport 3D Dataset (HM3D): 1000 Large-scale 3D Environments for Embodied AI

A Survey on Human-aware Robot Navigation

Semantic Curiosity for Active Visual Learning

How NeRFs and 3D Gaussian Splatting are Reshaping SLAM: a Survey

Vision-language navigation: a survey and taxonomy

Simultaneous Localization and Mapping Related Datasets: A Comprehensive Survey

3D reconstruction using Structure for Motion

From Perfect to Noisy World Simulation: Customizable Embodied
  Multi-modal Perturbations for SLAM Robustness Benchmarking


A simple, fully convolutional model for real-time instance segmentation.

YOLACT: Real-time Instance Segmentation

Enhancing Geometric Factors in Model Learning and Inference for Object Detection and Instance Segmentation

Human segmentation in surveillance video with deep learning

Dynamic Object Tracking and Masking for Visual SLAM

Metamorphic Testing for Object Detection Systems

Developing a Free and Open-Source Semi-Automated Building Exterior Crack Inspection Software for Construction and Facility Managers


open-source feature selection repository in python

Feature Selection: A Data Perspective

Few-Shot Learning-Based Human Activity Recognition

Differentiable Unsupervised Feature Selection based on a Gated Laplacian

Patterns and correlates of physical activity in adult Norwegians: a forecasted evolution up to 2025 based on machine learning approach

Block Model Guided Unsupervised Feature Selection


A distributed, fault-tolerant graph database

Demystifying Graph Databases: Analysis and Taxonomy of Data Organization, System Designs, and Graph Queries

Graph Databases: Their Power and Limitations

An introduction to Graph Data Management

Open source libraries and frameworks for biological data visualisation: A guide for developers

Cybersecurity knowledge graphs

GRAPHiQL: A graph intuitive query language for relational databases

Certified Graph View Maintenance with Regular Datalog

Theory and Practice of Logic Programming

Timed Epistemic Knowledge Bases for Social Networks (Extended Version)

biggy: An Implementation of Unified Framework for Big Data Management System


a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage: interactive visualization of de novo genome assemblies

Presence of Mobile Tigecycline Resistance Gene tet(X4) in Clinical Klebsiella pneumoniae

Comparison of De Novo Assembly Strategies for Bacterial Genomes

International journal of molecular sciences

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Phenotypic and genotypic features of the Mycobacterium tuberculosis lineage 1 subgroup in central Vietnam

Complete chloroplast genome sequence of Oxytropis glabra (Leguminosae)

Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus

The complete diploid reference genome of RPE-1 identifies human phased epigenetic landscapes

bioRxiv : the preprint server for biology


Reinforcement Learning Testbed for Power Consumption Optimization using EnergyPlus

Building HVAC Scheduling Using Reinforcement Learning via Neural Network Based Model Approximation

Reinforcement Learning Testbed for Power-Consumption Optimization


PyTorch implementation of the NIPS-17 paper "Poincaré Embeddings for Learning Hierarchical Representations"

Learning Continuous Hierarchies in the Lorentz Model of Hyperbolic Geometry

Hyperbolic Neural Networks++

Tree! I am no Tree! I am a Low Dimensional Hyperbolic Embedding

Robust Large-Margin Learning in Hyperbolic Space

Riemannian Adaptive Optimization Algorithm and Its Application to Natural Language Processing

Social centralization and semantic collapse: Hyperbolic embeddings of networks and text

Federated Learning on Riemannian Manifolds with Differential Privacy

Nested Subspace Arrangement for Representation of Relational Data

Unit Ball Model for Embedding Hierarchical Structures in the Complex Hyperbolic Space


PyTorch implementation of MoCo: https://arxiv.org/abs/1911.05722

Momentum Contrast for Unsupervised Visual Representation Learning

Improved Baselines with Momentum Contrastive Learning

Understanding Contrastive Representation Learning through Alignment and Uniformity on the Hypersphere

Contrastive Learning with Hard Negative Samples

Hard Negative Mixing for Contrastive Learning

See through Gradients: Image Batch Recovery via GradInversion

CoST: Contrastive Learning of Disentangled Seasonal-Trend Representations for Time Series Forecasting

8-bit Optimizers via Block-wise Quantization

The Unsurprising Effectiveness of Pre-Trained Vision Models for Control

Instance Localization for Self-supervised Detection Pretraining


Massively parallel hybrid particle-field molecular dynamics in Python.

HylleraasMD: A Domain Decomposition-Based Hybrid Particle-Field Software for Multiscale Simulations of Soft Matter

Journal of chemical theory and computation

Soft Matter under Pressure: Pushing Particle-Field Molecular Dynamics to the Isobaric Ensemble

Journal of chemical information and modeling

HylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Python


Android Package Inspector - dynamic analysis with api hooks, start unexported activities and more. (Xposed Module)

A Performance-Sensitive Malware Detection System Using Deep Learning on Mobile Devices

IEEE Transactions on Information Forensics and Security

Investigating the Security of EV Charging Mobile Applications as an Attack Surface

User Privacy and Data Flow Control for Android Apps: Systematic Literature Review


Free football data from StatsBomb

Expected passes

Flexible marked spatio-temporal point processes with applications to event sequences from association football

A Strategic Framework for Optimal Decisions in Football 1-vs-1 Shot-Taking Situations: An Integrated Approach of Machine Learning, Theory-Based Modeling, and Game Theory

Location analysis of players in UEFA EURO 2020 and 2022 using generalized valuation of defense by estimating probabilities

Learning Football Body-Orientation as a Matter of Classification

Distances for Comparing Multisets and Sequences

A data-driven framing of player and team performance in U.S. Women's soccer


CREPE: A Convolutional REpresentation for Pitch Estimation -- pre-trained model (ICASSP 2018)

CREPE: A Convolutional Representation for Pitch Estimation

Traditional Machine Learning for Pitch Detection

Addressing the confounds of accompaniments in singer identification

Score and Lyrics-Free Singing Voice Generation

Cross-domain Neural Pitch and Periodicity Estimation

The Efficacy of Self-Supervised Speech Models for Audio Representations

CREPE Notes: A new method for segmenting pitch contours into discrete notes


LZFSE compression library and command line tool

Interpretation-enabled Software Reuse Detection Based on a Multi-Level Birthmark Model

Lightweight compression with encryption based on Asymmetric Numeral
  Systems

A Review of the Asymmetric Numeral System and Its Applications to Digital Images

Fat Pointers for Temporal Memory Safety of C

The Efficiency of the ANS Entropy Encoding


Real Time Speech Enhancement in the Waveform Domain (Interspeech 2020)We provide a PyTorch implementation of the paper Real Time Speech Enhancement in the Waveform Domain. In which, we present a causal speech enhancement model working on the raw waveform that runs in real-time on a laptop CPU. The proposed model is based on an encoder-decoder architecture with skip-connections. It is optimized on both time and frequency domains, using multiple loss functions. Empirical evidence shows that it is capable of removing various kinds of background noise including stationary and non-stationary noises, as well as room reverb. Additionally, we suggest a set of data augmentation techniques applied directly on the raw waveform which further improve model performance and its generalization abilities.

SEGAN: Speech Enhancement Generative Adversarial Network

Parallel WaveGAN: A fast waveform generation model based on generative adversarial networks with multi-resolution spectrogram

Self-Supervised Learning for Speech Enhancement through Synthesis

Restoring speech intelligibility for hearing aid users with deep learning

Improving Speech Enhancement through Fine-Grained Speech Characteristics

TAPLoss: A Temporal Acoustic Parameter Loss for Speech Enhancement

Neural Comb Filtering using Sliding Window Attention Network for Speech Enhancement

Circuits, systems, and signal processing

Exploration of Adapter for Noise Robust Automatic Speech Recognition

Building a Luganda Text-to-Speech Model From Crowdsourced Data


:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2

ggmsa: a visual exploration tool for multiple sequence alignment and associated data

A cis-acting structural variation at the ZNF558 locus controls a gene regulatory network in human brain development.

Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Magnaporthe oryzae Species Complex

RT-PCR/MALDI-TOF Diagnostic Target Performance Reflects Circulating SARS-CoV-2 Variant Diversity in New York City

Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits


Deep learning toolbox based on PyTorch for hyperspectral data classification.

Spectral–Spatial Classification of Hyperspectral Imagery with 3D Convolutional Neural Network

Going Deeper With Contextual CNN for Hyperspectral Image Classification

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Deep Learning for Classification of Hyperspectral Data: A Comparative Review

IEEE Geoscience and Remote Sensing Magazine

HSI-CNN: A Novel Convolution Neural Network for Hyperspectral Image

Exploring Cross-Domain Pretrained Model for Hyperspectral Image Classification

IEEE Transactions on Geoscience and Remote Sensing

A High-Performance Spectral-Spatial Residual Network for Hyperspectral Image Classification with Small Training Data

Training Methods of Multi-Label Prediction Classifiers for Hyperspectral Remote Sensing Images

DEEP FEATURE EXTRACTION BASED ON DYNAMIC GRAPH CONVOLUTIONAL NETWORKS FOR ACCELERATED HYPERSPECTRAL IMAGE CLASSIFICATION

XXIV ISPRS CONGRESS: IMAGING TODAY, FORESEEING TOMORROW, COMMISSION III


R Wrapper for Tetrad Library

Large-scale empirical validation of Bayesian Network structure learning algorithms with noisy data

Bayesian network structure learning with causal effects in the presence of latent variables

Hybrid Bayesian network discovery with latent variables by scoring multiple interventions

Discovery and density estimation of latent confounders in Bayesian networks with evidence lower bound


Creative Commons Attribution 4.0 International

Open biodiversity data publication by the INBO

GPS tracking data of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast

A checklist recipe: making species data open and FAIR

Database : the journal of biological databases and curation

Watervogels – Wintering waterbirds in Flanders, Belgium


Image to prompt with BLIP and CLIP

Synthbuster: Towards Detection of Diffusion Model Generated Images

Zenodo (CERN European Organization for Nuclear Research)

GenAssist: Making Image Generation Accessible

DEADiff: An Efficient Stylization Diffusion Model with Disentangled Representations

Benchmarking Deepart Detection

Prompting for Discovery: Flexible Sense-Making for AI Art-Making with Dreamsheets

Prompt Expansion for Adaptive Text-to-Image Generation

Diffusing Colors: Image Colorization with Text Guided Diffusion

IntentTuner: An Interactive Framework for Integrating Human Intentions in Fine-tuning Text-to-Image Generative Models

A New Creative Generation Pipeline for Click-Through Rate with Stable Diffusion Model

VA3: Virtually Assured Amplification Attack on Probabilistic Copyright Protection for Text-to-Image Generative Models


Mellotron: a multispeaker voice synthesis model based on Tacotron 2 GST that can make a voice emote and sing without emotive or singing training data

Mellotron: Multispeaker Expressive Voice Synthesis by Conditioning on Rhythm, Pitch and Global Style Tokens

Using previous acoustic context to improve Text-to-Speech synthesis

An objective evaluation of the effects of recording conditions and speaker characteristics in multi-speaker deep neural speech synthesis


A fast multi-threaded k-mer counter

Highly accurate long-read HiFi sequencing data for five complex genomes

Predicting the impact of non-coding variants on DNA methylation

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

High molecular weight glutenin gene diversity in Aegilops tauschii demonstrates unique origin of superior wheat quality

A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies

Estimation of genome size using k-mer frequencies from corrected long reads

The chromosome-level genome of Gypsophila paniculata reveals the molecular mechanism of floral development and ethylene insensitivity

A telomere-to-telomere reference genome provides genetic insight into the pentacyclic triterpenoid biosynthesis in Chaenomeles speciosa

Fast Approximation of Frequent k-mers and Applications to Metagenomics


A PyTorch implementation of the Transformer model in "Attention is All You Need".

Attention Is All You Need

A Structured Self-attentive Sentence Embedding

Hardware Accelerator for Multi-Head Attention and Position-Wise Feed-Forward in the Transformer

Robustness to Unbounded Smoothness of Generalized SignSGD

Conditional Self-Attention for Query-based Summarization

Adaptive Precision Training: Quantify Back Propagation in Neural Networks with Fixed-point Numbers

Medformer: A Multi-Granularity Patching Transformer for Medical
  Time-Series Classification

On Suppressing Range of Adaptive Stepsizes of Adam to Improve Generalisation Performance

Extending AdamW by Leveraging Its Second Moment and Magnitude

Adaptive Strategies in Non-convex Optimization


Source code for generating the QGreenland package hosted at https://qgreenland.org/


Evaluation kit for the HEAR Benchmark

HEAR: Holistic Evaluation of Audio Representations

Masked Spectrogram Modeling using Masked Autoencoders for Learning General-purpose Audio Representation

Self-Supervised Audio Teacher-Student Transformer for Both Clip-Level and Frame-Level Tasks

BYOL-S: Learning Self-supervised Speech Representations by Bootstrapping

Audio Barlow Twins: Self-Supervised Audio Representation Learning

Cacophony: An Improved Contrastive Audio-Text Model

Masked Autoencoders with Multi-Window Local-Global Attention Are Better Audio Learners


CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Spatial multiomics map of trophoblast development in early pregnancy

Spatially resolved multiomics of human cardiac niches

Mapping and Validation of scRNA-Seq-Derived Cell-Cell Communication Networks in the Tumor Microenvironment

Single-cell RNA sequencing depicts the local cell landscape in thyroid-associated ophthalmopathy

NADase CD38 is a key determinant of ovarian aging

CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics data

A spatiotemporal gene expression and cell atlases of the developing rat ovary

Spatiotemporal Transcriptome Analysis Reveals Activation of the AP1 Pathway in the Ovarian Microenvironment during the Transition from Premenopause to Postmenopause


BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

The Social Impact of Generative AI: An Analysis on ChatGPT

Proceedings of the 2023 ACM Conference on Information Technology for Social Good

Leveraging Biomolecule and Natural Language through Multi-Modal
  Learning: A Survey

Language model and its interpretability in biomedicine: A scoping review

Applications of cutting-edge artificial intelligence technologies in biomedical literature and document mining

MediSwift: Efficient Sparse Pre-trained Biomedical Language Models


A Large-scale Chinese Short-Text Conversation Dataset and Chinese pre-training dialog models

The Curious Case of Neural Text Degeneration

Neural Responding Machine for Short-Text Conversation

TransferTransfo: A Transfer Learning Approach for Neural Network Based Conversational Agents

A Large-Scale Chinese Short-Text Conversation Dataset

Towards an Online Empathetic Chatbot with Emotion Causes

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

CPED: A Large-Scale Chinese Personalized and Emotional Dialogue Dataset for Conversational AI

Retrieve, Discriminate and Rewrite: A Simple and Effective Framework for Obtaining Affective Response in Retrieval-Based Chatbots

Findings of the Association for Computational Linguistics: EMNLP 2021

Prediction, Selection, and Generation: Exploration of Knowledge-Driven Conversation System

RealMedDial: A Real Telemedical Dialogue Dataset Collected from Online Chinese Short-Video Clips

International Conference on Computational Linguistics


The PyTorch improved version of TPAMI 2017 paper: Face Alignment in Full Pose Range: A 3D Total Solution.

IEEE transactions on pattern analysis and machine intelligence

Towards Fast, Accurate and Stable 3D Dense Face Alignment

Appearance-based Gaze Estimation With Deep Learning: A Review and Benchmark

Face Forgery Detection by 3D Decomposition

Towards High Fidelity Monocular Face Reconstruction with Rich Reflectance using Self-supervised Learning and Ray Tracing

DAD-3DHeads: A Large-scale Dense, Accurate and Diverse Dataset for 3D Head Alignment from a Single Image

Face Synthesis for Eyeglass-Robust Face Recognition

SPACE: Speech-driven Portrait Animation with Controllable Expression

GANDiffFace: Controllable Generation of Synthetic Datasets for Face Recognition with Realistic Variations

Towards Pose-invariant Lip-Reading


ACOLITE: generic atmospheric correction module

Using Optical Water Types to Monitor Changes in Optically Complex Inland and Coastal Waters

Analysis and Classification of Stormwater and Wastewater Runoff From the Tijuana River Using Remote Sensing Imagery

Validation of Landsat 8 high resolution Sea Surface Temperature using surfers


DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort

Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing

Whole-genome CNV analysis: advances in computational approaches

Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features

Parliament2: Accurate structural variant calling at scale

Structure–function analysis of oncogenic EGFR Kinase Domain Duplication reveals insights into activation and a potential approach for therapeutic targeting

Reference SVA insertion polymorphisms are associated with Parkinson’s Disease progression and differential gene expression

Analysis pipelines for cancer genome sequencing in mice

A locus conferring tolerance to Theileria infection in African cattle

PopDel identifies medium-size deletions simultaneously in tens of thousands of genomes


RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

The Transcription Factor bZIP60 Links the Unfolded Protein Response to the Heat Stress Response in Maize.

Methods to study splicing from high-throughput RNA sequencing data.

SPLICEOSOMAL PRE-MRNA SPLICING: METHODS AND PROTOCOLS

A simple guide to de novo transcriptome assembly and annotation

Gasdermin D inhibition confers antineutrophil-mediated cardioprotection in acute myocardial infarction

WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling

Prioritizing natural-selection signals from the deep-sequencing genomic data suggests multi-variant adaptation in Tibetan highlanders

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Mitochondrial Ca2+ Overload Leads to Mitochondrial Oxidative Stress and Delayed Meiotic Resumption in Mouse Oocytes

Frontiers in cell and developmental biology

Translational control of one-carbon metabolism underpins ribosomal protein phenotypes in cell division and longevity

Chromosome-level assembly and analysis of the Thymus genome provide insights into glandular secretory trichome formation and monoterpenoid biosynthesis in thyme


Python halo mass function calculator

The Dearth of z~10 Galaxies in all HST Legacy Fields -- The Rapid
  Evolution of the Galaxy Population in the First 500 Myr

HMFcalc: An Online Tool for Calculating Dark Matter Halo Mass Functions

The halo model as a versatile tool to predict intrinsic alignments

ASTROPHYSICAL JOURNAL (ISSN 0004-637X) - The Rest-frame Optical (900 nm) Galaxy Luminosity Function at z ̃ 4-7: Abundance Matching Points to Limited Evolution in the M STAR /M HALO Ratio at z ≥ 4

A model for multiproperty galaxy cluster statistics

How well do we know the halo mass function?

Monthly Notices of the Royal Astronomical Society: Letters

The impact of scatter in the galaxy UV luminosity to halo mass relation on Ly α visibility during the epoch of reionization

Monthly notices of the Royal Astronomical Society

ON THE CONTRIBUTION OF FLUORESCENCE TO LYα HALOS AROUND STAR-FORMING GALAXIES

TheHaloMod: An online calculator for the halo model

THE MASSIVE AND DISTANT CLUSTERS OF WISE SURVEY: MOO J1142+1527, A 10 15 M ⊙ GALAXY CLUSTER AT z = 1.19


Single-Cell Genotyping Tool

Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data

A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

Whole-organism eQTL mapping at cellular resolution with single-cell sequencing

Single-cell RNA sequencing reveals spatiotemporal heterogeneity and malignant progression in pancreatic neuroendocrine tumor

International journal of biological sciences

Single-cell transcriptional regulation and genetic evolution of neuroendocrine prostate cancer

Clonal competition within complex evolutionary hierarchies shapes AML over time

Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction

bioRxiv : the preprint server for biology

A single cell atlas of sexual development inPlasmodium falciparum

The impact of neoadjuvant chemotherapy on the tumor microenvironment in advanced high-grade serous carcinoma


Polarized covariant radiative transport code

PATOKA: Simulating Electromagnetic Observables of Black Hole Accretion

The Astrophysical Journal Supplement Series

The Role of Adaptive Ray Tracing in Analyzing Black Hole Structure

Updated Transfer Coefficients for Magnetized Plasmas

Shadows of loop quantum black holes: semi-analytical simulations of loop quantum gravity effects on Sagittarius A* and M87*

Comparison of Polarized Radiative Transfer Codes Used by the EHT Collaboration

Modeling the inner part of M87 jet: confronting jet morphology with theory


Analysis of high resolution spectroscopic time-series of exoplanets

Titanium oxide and chemical inhomogeneity in the atmosphere of the exoplanet WASP-189 b

Vanadium oxide and a sharp onset of cold-trapping on a giant exoplanet

The Mantis Network II: examining the 3D high-resolution observable properties of the UHJs WASP-121b and WASP-189b through GCM modelling

Searching for NLTE effects in the high-resolution transmission spectrum of WASP-121 b with cloudy for exoplanets

The atmospheric composition of the ultra-hot Jupiter WASP-178 b observed with ESPRESSO


The open-source particle-in-cell post-processor.

Kinetic and finite ion mass effects on the transition to relativistic self-induced transparency in laser-driven ion acceleration

Demonstration of passive plasma lensing of a laser wakefield accelerated electron bunch

Controlling the Self-Injection Threshold in Laser Wakefield Accelerators

Characterization of laser-driven proton acceleration from water microdroplets


Survival package for R

hsCRP Level and the Risk of Death or Recurrent Cardiovascular Events in Patients With Myocardial Infarction: a Healthcare‐Based Study

Journal of the American Heart Association : Cardiovascular and Cerebrovascular Disease

Automated image analysis of NSCLC biopsies to predict response to anti-PD-L1 therapy

Survival analysis: part II – applied clinical data analysis

Allele-Specific DNA Methylation and Its Interplay with Repressive Histone Marks at Promoter-Mutant TERT Genes

Determinants of frailty development and progression using a multidimensional frailty index: Evidence from the English Longitudinal Study of Ageing

Integrative Tumor and Immune Cell Multi-omic Analyses Predict Response to Immune Checkpoint Blockade in Melanoma

When and where mortality occurs throughout the annual cycle changes with age in a migratory bird: individual vs population implications

Expressed fusion gene landscape and its impact in multiple myeloma

Unraveling the Host Plant Alternation of Cacopsylla pruni – Adults but Not Nymphs Can Survive on Conifers Due to Phloem/Xylem Composition

Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma


Line Modeling Engine

Water in star-forming regions (WISH): Physics and chemistry from clouds to disks as probed by Herschel spectroscopy

HAL (Le Centre pour la Communication Scientifique Directe)

Constraining Gas-phase Carbon, Oxygen, and Nitrogen in the IM Lup Protoplanetary Disk

The First Detection of 13C17O in a Protoplanetary Disk: A Robust Tracer of Disk Gas Mass

HOW DENSE IS YOUR GAS? ON THE RECOVERABILITY OF LVG MODEL PARAMETERS

Challenges and Techniques for Simulating Line Emission

MAGRITTE, a modern software library for 3D radiative transfer: I. Non-LTE atomic and molecular line modelling

Gravitational instabilities in a protosolar-like disc – II. Continuum emission and mass estimates

Arp 220: New Observational Insights into the Structure and Kinematics of the Nuclear Molecular Disks and Surrounding Gas

A SUBLIME 3D Model for Cometary Coma Emission: The Hypervolatile-rich Comet C/2016 R2 (PanSTARRS)

Synthetic line and continuum observations of simulated turbulent clouds: the apparent widths of filaments


The MLST pipeline developed by the PathOGiST research group

MentaLiST – A fast MLST caller for large MLST schemes

International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives

Whole-Genome Analysis of Staphylococcus aureus Isolates from Ready-to-Eat Food in Russia

Plasmid Composition, Antimicrobial Resistance and Virulence Genes Profiles of Ciprofloxacin- and Third-Generation Cephalosporin-Resistant Foodborne Salmonella enterica Isolates from Russia

Genomic Characterization of Clinical Acinetobacter baumannii Isolates Obtained from COVID-19 Patients in Russia


Yosys Open SYnthesis Suite

Efficient Edge-AI Application Deployment for FPGAs

Synthesizing Functional Reactive Programs

MAFIA: Protecting the Microarchitecture of Embedded Systems Against Fault Injection Attacks

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems

High-level Synthesis using the Julia Language

Countering the Path Explosion Problem in the Symbolic Execution of Hardware Designs


Nvidia Semantic Segmentation monorepo

PointPainting: Sequential Fusion for 3D Object Detection

Hierarchical Multi-Scale Attention for Semantic Segmentation

Improving Semantic Segmentation via Video Propagation and Label Relaxation

DeepFusion: Lidar-Camera Deep Fusion for Multi-Modal 3D Object Detection

PandaSet: Advanced Sensor Suite Dataset for Autonomous Driving

SDCNet: Video Prediction Using Spatially-Displaced Convolution

SemSegMap – 3D Segment-based Semantic Localization

Simple and Efficient Architectures for Semantic Segmentation

Vision-based Large-scale 3D Semantic Mapping for Autonomous Driving Applications

Contour-Aware Equipotential Learning for Semantic Segmentation


Evaluation code for various unsupervised automated metrics for Natural Language Generation.

UniVL: A Unified Video and Language Pre-Training Model for Multimodal Understanding and Generation

Relevance of Unsupervised Metrics in Task-Oriented Dialogue for Evaluating Natural Language Generation

Towards Emotional Support Dialog Systems

Knowledge-Grounded Dialogue Generation with Pre-trained Language Models

Step-by-Step: Separating Planning from Realization in Neural Data-to-Text Generation

TM2T: Stochastic and Tokenized Modeling for the Reciprocal Generation of 3D Human Motions and Texts

Low-Resource Knowledge-Grounded Dialogue Generation

CDL: Curriculum Dual Learning for Emotion-Controllable Response Generation

Contrastive Learning with Adversarial Perturbations for Conditional Text Generation

GraDA: Graph Generative Data Augmentation for Commonsense Reasoning

Proceedings of the 2nd Workshop on Deep Learning on Graphs for Natural Language Processing (DLG4NLP 2022)


CloudDrift accelerates the use of Lagrangian data for atmospheric, oceanic, and climate sciences.


A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks

Molecular layer interneurons in the cerebellum encode for valence in associative learning

Construction and imaging of a neurovascular unit model

Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience

CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations


hyperSpec: Tools for Spectroscopy (R package)

Metabolite Quantification by Fourier Transform Infrared Spectroscopy in Diatoms: Proof of Concept on Phaeodactylum tricornutum

Label-free Surface Enhanced Raman Scattering (SERS) on Centrifugal Silver Plasmonic Paper (CSPP): A Novel Methodology for Unprocessed Biofluids Sampling and Analysis

Raman Spectroscopic Differentiation of Streptococcus pneumoniae From Other Streptococci Using Laboratory Strains and Clinical Isolates

Frontiers in cellular and infection microbiology


The Opportunistic Network Environment simulator

A self-sustainable opportunistic solution for emergency detection in ageing people living in rural areas

An Efficient Routing Protocol with Overload Control for Group Mobility in Delay-Tolerant Networking

Genetic Improvement of Routing Protocols for Delay Tolerant Networks

ACM Transactions on Evolutionary Learning and Optimization


Anomaly Detection with R

A review on outlier/anomaly detection in time series data

Evaluating Real-Time Anomaly Detection Algorithms -- The Numenta Anomaly Benchmark

International Conference on Machine Learning and Applications

Automatic Anomaly Detection in the Cloud Via Statistical Learning

The Building Data Genome Project 2, energy meter data from the ASHRAE Great Energy Predictor III competition

Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data

RobustTAD: Robust Time Series Anomaly Detection via Decomposition and Convolutional Neural Networks

Unsupervised Anomaly Detection Approach for Time-Series in Multi-Domains Using Deep Reconstruction Error

ReRe: A Lightweight Real-Time Ready-to-Go Anomaly Detection Approach for Time Series

Computer Software and Applications Conference

RePAD: Real-time Proactive Anomaly Detection for Time Series

Precision and Recall for Range-Based Anomaly Detection


Simulation-Based Calibration Checking for Bayesian Computation: The Choice of Test Quantities Shapes Sensitivity

Intuitive joint priors for Bayesian linear multilevel models: The R2D2M2 prior


A simple and highly efficient RTS-game-inspired environment for reinforcement learning (formerly Gym-MicroRTS)

Gym-μRTS: Toward Affordable Full Game Real-time Strategy Games Research with Deep Reinforcement Learning

Action Guidance: Getting the Best of Sparse Rewards and Shaped Rewards for Real-time Strategy Games

Comparing Observation and Action Representations for Deep Reinforcement Learning in μRTS

Transformers as Policies for Variable Action Environments

A Competition Winning Deep Reinforcement Learning Agent in microRTS


An open source, embedded, high performance g-code-parser and CNC milling controller written in optimized C that will run on a straight Arduino

Intrinsic motivation and episodic memories for robot exploration of high-dimensional sensory spaces

Opportunities for Robotic Systems and Automation in Cotton Production

Design and Implementation of an Urban Farming Robot

Recent Developments Regarding Painting Robots for Research in Automatic Painting, Artificial Creativity, and Machine Learning

Ecology of fear in highly invasive fish revealed by robots

How particle shape affects granular segregation in industrial and geophysical flows

Proceedings of the National Academy of Sciences of the United States of America

Opportunistic and Location-Based Collaboration Architecture among Mobile Assets and Fixed Manufacturing Processes

Concept for a precise academic Gripper


Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients.

Characterizing dedifferentiation of thyroid cancer by integrated analysis

Single-Cell Transcriptomics Reveals the Complexity of the Tumor Microenvironment of Treatment-Naive Osteosarcoma

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

Human Bone Marrow Organoids for Disease Modeling, Discovery, and Validation of Therapeutic Targets in Hematologic Malignancies

The developing mouse coronal suture at single-cell resolution

Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer

Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients

Macrophages orchestrate the expansion of a proangiogenic perivascular niche during cancer progression


Data and analysis for NA12878 genome on nanopore

Nanopore sequencing and assembly of a human genome with ultra-long reads

Nanopore native RNA sequencing of a human poly(A) transcriptome

RNA modifications detection by comparative Nanopore direct RNA sequencing

Beyond mass spectrometry, the next step in proteomics

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

Profiling the genome-wide landscape of tandem repeat expansions

DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

The RNA Atlas expands the catalog of human non-coding RNAs

Zenodo (CERN European Organization for Nuclear Research)

Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing


PyTorch implementation of Super SloMo by Jiang et al.

Super SloMo: High Quality Estimation of Multiple Intermediate Frames for Video Interpolation

Channel Attention Is All You Need for Video Frame Interpolation

THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE

Quadratic video interpolation

Zooming Slow-Mo: Fast and Accurate One-Stage Space-Time Video Super-Resolution

Deep Animation Video Interpolation in the Wild

V2E: From video frames to realistic DVS event camera streams.

ST-MFNet: A Spatio-Temporal Multi-Flow Network for Frame Interpolation

Motion-based frame interpolation for film and television effects

Zooming SlowMo: An Efficient One-Stage Framework for Space-Time Video Super-Resolution

Video Interpolation and Prediction with Unsupervised Landmarks


Performance-portable geometric search library

ArborX: A Performance Portable Geometric Search Library

Simulating Hydrodynamics in Cosmology with CRK-HACC

A single-tree algorithm to compute the Euclidean minimum spanning tree on GPUs

Fast tree-based algorithms for DBSCAN for low-dimensional data on GPUs

Proceedings of the 52nd International Conference on Parallel Processing

PANDORA: A Parallel Dendrogram Construction Algorithm for Single Linkage Clustering on GPU

Revising Apetrei's bounding volume hierarchy construction algorithm to
  allow stackless traversal


Code for a multi-agent particle environment used in the paper "Multi-Agent Actor-Critic for Mixed Cooperative-Competitive Environments"

Actor-Attention-Critic for Multi-Agent Reinforcement Learning

Learning Transferable Cooperative Behavior in Multi-Agent Teams

Learning Implicit Credit Assignment for Cooperative Multi-Agent Reinforcement Learning

Feudal Multi-Agent Hierarchies for Cooperative Reinforcement Learning

Learning Structured Communication for Multi-agent Reinforcement Learning

Plan Better Amid Conservatism: Offline Multi-Agent Reinforcement Learning with Actor Rectification

Delay-Aware Multi-Agent Reinforcement Learning.

GCS: Graph-based Coordination Strategy for Multi-Agent Reinforcement Learning

Continuously Discovering Novel Strategies via Reward-Switching Policy Optimization


aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment)

What You Say and How You Say It Matters: Predicting Stock Volatility Using Verbal and Vocal Cues

Meeting of the Association for Computational Linguistics

VolTAGE: Volatility Forecasting via Text Audio Fusion with Graph Convolution Networks for Earnings Calls

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)

LibriVoxDeEn: A Corpus for German-to-English Speech Translation and German Speech Recognition

Learning to Detect Bipolar Disorder and Borderline Personality Disorder with Language and Speech in Non-Clinical Interviews

M-Arg: Multimodal Argument Mining Dataset for Political Debates with Audio and Transcripts

Development and Evaluation of Speech Synthesis System Based on Deep Learning Models

BERT, can HE predict contrastive focus? Predicting and controlling prominence in neural TTS using a language model

Multimodal Argument Mining: A Case Study in Political Debates

Creation and Detection of German Voice Deepfakes

ManaTTS Persian: a recipe for creating TTS datasets for lower resource
  languages


PyTorch implementations of Generative Adversarial Networks.

Image-to-Image Translation with Conditional Adversarial Networks

Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks

Unsupervised Representation Learning with Deep Convolutional Generative Adversarial Networks

Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network

Improved Training of Wasserstein GANs

Context Encoders: Feature Learning by Inpainting

On the Effectiveness of Least Squares Generative Adversarial Networks

Wasserstein GAN

InfoGAN: Interpretable Representation Learning by Information Maximizing Generative Adversarial Nets

StarGAN: Unified Generative Adversarial Networks for Multi-Domain Image-to-Image Translation


RNA velocity estimation in Python

A single-cell transcriptomic atlas characterizes the silk-producing organ in the silkworm

The heterogeneity of mammalian utricular cells over the course of development

A novel memory-like Tfh cell subset is precursor to effector Tfh cells in recall immune responses

Microgel-based carriers enhance skeletal stem cell reprogramming towards immunomodulatory phenotype in osteoarthritic therapy


The Open Multilingual Wordnet

Intrinsically Interlingual: The Wn Python Library for Wordnets

Some Issues with Building a Multilingual Wordnet

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

Pinchah Kristang: A Dictionary of Kristang

Improving Medical Entity Recognition in Spanish by Means of Biomedical Language Models


Medusa: Simple Framework for Accelerating LLM Generation with Multiple Decoding Heads

Medusa: Simple LLM Inference Acceleration Framework with Multiple Decoding Heads

Towards Efficient Generative Large Language Model Serving: A Survey from Algorithms to Systems

A Survey of Resource-efficient LLM and Multimodal Foundation Models

SnapKV: LLM Knows What You are Looking for Before Generation

Efficient Interactive LLM Serving with Proxy Model-based Sequence Length
  Prediction

BiTA: Bi-Directional Tuning for Lossless Acceleration in Large Language Models


NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Accurate detection of complex structural variations using single molecule sequencing

Technology dictates algorithms: Recent developments in read alignment

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

Long-read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure

Long-read sequencing in human genetics

Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes

Study of complex structural variations of X-linked deafness-2 based on single-molecule sequencing

Detection of trait-associated structural variations using short-read sequencing


Large-scale pretraining for dialogue

DIALOGPT : Large-Scale Generative Pre-training for Conversational Response Generation

Towards a Human-like Open-Domain Chatbot

Knowledge-Grounded Dialogue Generation with Pre-trained Language Models

RedditBias: A Real-World Resource for Bias Evaluation and Debiasing of Conversational Language Models

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Zero-Resource Knowledge-Grounded Dialogue Generation

Conversations Are Not Flat: Modeling the Dynamic Information Flow across Dialogue Utterances

Personalized Response Generation via Generative Split Memory Network

North American Chapter of the Association for Computational Linguistics

Item Response Theory for Efficient Human Evaluation of Chatbots

Proceedings of the First Workshop on Evaluation and Comparison of NLP Systems

On the Generation of Medical Dialogs for COVID-19


Pytorch implementation for Semantic Segmentation/Scene Parsing on MIT ADE20K dataset

Pyramid Scene Parsing Network

Deep High-Resolution Representation Learning for Visual Recognition

Unified Perceptual Parsing for Scene Understanding

Semantic Understanding of Scenes Through the ADE20K Dataset

High-Resolution Representations for Labeling Pixels and Regions

CARAFE: Content-Aware ReAssembly of FEatures

Semi-supervised semantic segmentation needs strong, varied perturbations

MegDet: A Large Mini-Batch Object Detector

Differentiable Learning-to-Normalize via Switchable Normalization

Diffusion-based Image Translation using Disentangled Style and Content Representation


phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes

Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps

phyloFlash – Rapid SSU rRNA profiling and targeted assembly from metagenomes

Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2

Sugars dominate the seagrass rhizosphere

Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community

Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys

Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf

Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis

Microbial Diversity of Co-occurring Heterotrophs in Cultures of Marine Picocyanobacteria


Fast genome and metagenome distance estimation using MinHash

Mash: fast genome and metagenome distance estimation using MinHash

A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources

Potential Rhodopsin and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier

Core Defense Hotspots withinPseudomonas aeruginosaare a consistent and rich source of anti-phage defense systems

Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples

Genome-resolved metagenomics using environmental and clinical samples

Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance

Genomic and phenotypic characterization of Streptococcus mutans isolates suggests key gene clusters in regulating its interaction with Streptococcus gordonii

A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus)

Mycobacteriophage CRB2 defines a new subcluster in mycobacteriophage classification


Python implementation of CMA-ES

Scalable Global Optimization via Local Bayesian Optimization

Phoenics: A Bayesian Optimizer for Chemistry

Adaptive and Safe Bayesian Optimization in High Dimensions via One-Dimensional Subspaces

High-Dimensional Bayesian Optimization with Sparse Axis-Aligned Subspaces

Learning Search Space Partition for Black-box Optimization using Monte Carlo Tree Search

Re-Examining Linear Embeddings for High-Dimensional Bayesian Optimization

Scalable Constrained Bayesian Optimization

Policy Transfer with Strategy Optimization

Design-Bench: Benchmarks for Data-Driven Offline Model-Based Optimization

Escaping local minima with local derivative-free methods: a numerical investigation


A (PyTorch) imbalanced dataset sampler for oversampling low frequent classes and undersampling high frequent ones.

Affect Expression Behaviour Analysis in the Wild using Spatio-Channel Attention and Complementary Context Information

NYCU_TWD@LT-EDI-ACL2022: Ensemble Models with VADER and Contrastive Learning for Detecting Signs of Depression from Social Media

Proceedings of the Second Workshop on Language Technology for Equality, Diversity and Inclusion

Multi-Scale Speaker Embedding-Based Graph Attention Networks For Speaker Diarisation

CNN-based event classification of alpha-decay events in nuclear emulsion

Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment

Dynamic Adaptive Threshold based Learning for Noisy Annotations Robust Facial Expression Recognition

Generative Adversarial Networks for Morphological–Temporal Classification of Stem Cell Images

A Novel Incremental Cross-Modal Hashing Approach

Similar Image Retrieval using Autoencoder. I. Automatic Morphology Classification of Galaxies

Online Continual Learning via Multiple Deep Metric Learning and Uncertainty-guided Episodic Memory Replay -- 3rd Place Solution for ICCV 2021 Workshop SSLAD Track 3A Continual Object Classification


ChiantiPy is a python package to calculate the radiative properties of astrophysical plasmas based on the CHIANTI atomic database

CHIANTI-An Atomic Database for Emission Lines. XV. Version 9, Improvements for the X-Ray Satellite Lines

The Astrophysical Journal Supplement Series

AU Microscopii in the Far-UV: Observations in Quiescence, during Flares, and Implications for AU Mic b and c

Hydrodynamic Atmospheric Escape in HD 189733 b: Signatures of Carbon and Hydrogen Measured with the Hubble Space Telescope

Modelling thermochemical processes in protoplanetary discs I: numerical methods

Monthly Notices of the Royal Astronomical Society

R-matrix Electron-impact Excitation Data for the H- and He-like Ions with Z = 6−30


PASA software

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution

A bird’s white-eye view on avian sex chromosome evolution

A draft genome, resequencing, and metabolomes reveal the genetic background and molecular basis of the nutritional and medicinal properties of loquat (Eriobotrya japonica (Thunb.) Lindl)

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

bioRxiv : the preprint server for biology

The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution

The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies

Patterns of recombination in snakes reveal a tug of war between PRDM9 and promoter-like features

Genome sequencing of Sitopsis species provides insights into their contribution to the B subgenome of bread wheat

Gossypium purpurascens genome provides insight into the origin and domestication of upland cotton


RAPPOR: Privacy-Preserving Reporting Algorithms

Practical Locally Private Heavy Hitters

Local Differential Privacy: a tutorial

ARA: Aggregated RAPPOR and Analysis for Centralized Differential Privacy

Local Differentially Private Fuzzy Counting in Stream Data Using Probabilistic Data Structures

IEEE Transactions on Knowledge and Data Engineering


PyTorch to Keras model convertor

Responsible AI Pattern Catalogue: A Collection of Best Practices for AI Governance and Engineering

Towards a Roadmap on Software Engineering for Responsible AI

COVID-19 detection using chest X-rays: is lung segmentation important for generalization?

Investigating the impact of transient hardware faults on deep learning neural network inference

Software testing, verification & reliability


Python tools for spatial trajectory and time-series data analysis

Rodent Arena Tracker (RAT): A Machine Vision Rodent Tracking Camera and Closed Loop Control System

Automated Analysis of Stroke Mouse Trajectory Data With Traja

Enabling Spatial Digital Twins: Technologies, Challenges, and Future Research Directions

Deep Learning for Trajectory Data Management and Mining: A Survey and
  Beyond

An overview of open source Deep Learning-based libraries for Neuroscience


AMR-to-text Generation with Synchronous Node Replacement Grammar

Creation of a Balanced State-of-the-Art Multilayer Corpus for NLU

PROCEEDINGS OF THE ELEVENTH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2018)

Augmenting Abstract Meaning Representation for Human-Robot Dialogue

Proceedings of the First International Workshop on Designing Meaning Representations

A Human Evaluation of AMR-to-English Generation Systems

Adposition and Case Supersenses v2.6: Guidelines for English

Abstract Syntax as Interlingua: Scaling Up the Grammatical Framework from Controlled Languages to Robust Pipelines

Spanish Abstract Meaning Representation: Annotation of a General Corpus

Abstract meaning representation of Turkish

World Models for Math Story Problems

Semantic-Based Opinion Summarization

Recent Advances in Natural Language Processing


EvoloPy toolbox provides classical and recent nature-inspired metaheuristic for the global optimization.

Swarm Intelligence Algorithms in Text Document Clustering with Various Benchmarks

Opytimizer: A Nature-Inspired Python Optimizer

A New Metaheuristic Approach to Solving Benchmark Problems: Hybrid Salp Swarm Jaya Algorithm

Computers, materials & continua/Computers, materials & continua (Print)


The Bitcoin Fungibility Framework

Adoption and Actual Privacy of Decentralized CoinJoin Implementations in Bitcoin

Pinpointing and Measuring Wasabi and Samourai CoinJoins in the Bitcoin Ecosystem.

BaseSAP: Modular Stealth Address Protocol for Programmable Blockchains

Heuristics for Detecting CoinJoin Transactions on the Bitcoin Blockchain


This repository contains the results of the FAIR Metrics Group

Evaluating FAIR maturity through a scalable, automated, community-governed framework

Unlocking the Power of Artificial Intelligence and Big Data in Medicine

Open Government Data: Usage trends and metadata quality

A Semi-Automated Workflow for FAIR Maturity Indicators in the Life Sciences

OpenPVSignal: Advancing Information Search, Sharing and Reuse on Pharmacovigilance Signals via FAIR Principles and Semantic Web Technologies

Making Neural Networks FAIR

Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles

Two real use cases of FAIR maturity indicators in the life sciences


ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

ENIGMA HALFpipe: Interactive, reproducible, and efficient analysis for resting-state and task-based fMRI data

Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium

ENIGMA’s simple seven: Recommendations to enhance the reproducibility of resting-state fMRI in traumatic brain injury

Intrusive Traumatic Re-Experiencing Domain: Functional Connectivity Feature Classification by the ENIGMA PTSD Consortium

Biological psychiatry global open science


Tevatron - A flexible toolkit for neural retrieval research and development.

Dense Passage Retrieval for Open-Domain Question Answering

Dense Text Retrieval Based on Pretrained Language Models: A Survey

Fine-Tuning LLaMA for Multi-Stage Text Retrieval

Tevatron: An Efficient and Flexible Toolkit for Dense Retrieval

Improving Query Representations for Dense Retrieval with Pseudo Relevance Feedback: A Reproducibility Study

DataLab: A Platform for Data Analysis and Intervention

Sparsifying Sparse Representations for Passage Retrieval by Top-k Masking

The tale of two MS MARCO -- and their unfair comparisons

DataFinder: Scientific Dataset Recommendation from Natural Language Descriptions

Towards Best Practices for Training Multilingual Dense Retrieval Models


Diagnostics for HierArchical Regession Models

Should Dairy Cattle Be Trained to a Virtual Fence System as Individuals or in Groups?

Animals : an open access journal from MDPI

Behavioural Diversity Study in Bottlenose Dolphin (Tursiops truncatus) Groups and Its Implications for Welfare Assessments

Pathogen evasion of social immunity

Area, isolation and climate explain the diversity of mammals on islands worldwide

Detecting Ultra- and Circadian Activity Rhythms of Dairy Cows in Automatic Milking Systems Using the Degree of Functional Coupling—A Pilot Study

Influence of Soldiers on Exploratory Foraging Behavior in the Formosan Subterranean Termite, Coptotermes formosanus (Blattodea: Rhinotermitidae)

Examining the potential influence of crosslinguistic lexical similarity on word-choice transfer in L2 English


Pointcept: a codebase for point cloud perception research. Latest works: PTv3 (CVPR'24 Oral), PPT (CVPR'24), OA-CNNs (CVPR'24), MSC (CVPR'23)

4D Spatio-Temporal ConvNets: Minkowski Convolutional Neural Networks

Point Transformer

Searching Efficient 3D Architectures with Sparse Point-Voxel Convolution

PointContrast: Unsupervised Pre-training for 3D Point Cloud Understanding

PointGroup: Dual-Set Point Grouping for 3D Instance Segmentation

Stratified Transformer for 3D Point Cloud Segmentation

Exploring Data-Efficient 3D Scene Understanding with Contrastive Scene Contexts

Point Transformer V2: Grouped Vector Attention and Partition-based Pooling

Mix3D: Out-of-Context Data Augmentation for 3D Scenes

Point Transformer V3: Simpler, Faster, Stronger


SPAdes Genome Assembler

Metaviral SPAdes: assembly of viruses from metagenomic data

Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner

Plasmid detection and assembly in genomic and metagenomic data sets

A simple guide to de novo transcriptome assembly and annotation

HASLR: Fast Hybrid Assembly of Long Reads

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Improving the Inhibitory Effect of Phages against Pseudomonas aeruginosa Isolated from a Burn Patient Using a Combination of Phages and Antibiotics

Extending rnaSPAdes functionality for hybrid transcriptome assembly

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs


mPLUG-Owl: The Powerful Multi-modal Large Language Model  Family

mPLUG-Owl: Modularization Empowers Large Language Models with Multimodality

mPLUG-Owl2: Revolutionizing Multi-modal Large Language Model with Modality Collaboration

mPLUG-2: A Modularized Multi-modal Foundation Model Across Text, Image and Video

Unified Hallucination Detection for Multimodal Large Language Models

Examining Gender and Racial Bias in Large Vision-Language Models Using a
  Novel Dataset of Parallel Images

mPLUG-Owl3: Towards Long Image-Sequence Understanding in Multi-Modal Large Language Models

PhD: A Prompted Visual Hallucination Evaluation Dataset

Explainable Multimodal Emotion Recognition

VideoCon: Robust Video-Language Alignment via Contrast Captions

VideoPhy: Evaluating Physical Commonsense for Video Generation


Explain, analyze, and visualize NLP language models. Ecco creates interactive visualizations directly in Jupyter notebooks explaining the behavior of Transformer-based language models (like GPT2, BERT, RoBERTA, T5, and T0).

AMMUS : A Survey of Transformer-based Pretrained Models in Natural Language Processing

Ecco: An Open Source Library for the Explainability of Transformer Language Models

Meeting of the Association for Computational Linguistics

Foundation Models for Natural Language Processing -- Pre-trained Language Models Integrating Media

GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models

GeMI: interactive interface for transformer-based Genomic Metadata Integration

Database : the journal of biological databases and curation


Minimal keyword extraction with BERT

Generative Transformers for Design Concept Generation

Natural Language Processing in-and-for Design Research

TEXTOIR: An Integrated and Visualized Platform for Text Open Intent Recognition

Retrieval augmentation of large language models for lay language generation

A Comparative Assessment of State-Of-The-Art Methods for Multilingual Unsupervised Keyphrase Extraction

IFIP advances in information and communication technology

LatestEval: Addressing Data Contamination in Language Model Evaluation through Dynamic and Time-Sensitive Test Construction

Empathetic Dialogue Generation with Pre-trained RoBERTa-GPT2 and External Knowledge

Enhancing patent retrieval using text and knowledge graph embeddings: a technical note

ConvTrans: Transforming Web Search Sessions for Conversational Dense Retrieval

Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing

SAPPHIRE: Approaches for Enhanced Concept-to-Text Generation


Spatial alignment of single cell transcriptomic data.

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

Zenodo (CERN European Organization for Nuclear Research)

Benchmarking and integration of methods for deconvoluting spatial transcriptomic data

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

A single-cell time-lapse of mouse prenatal development from gastrula to birth


Problem Agnostic Speech Encoder

Adversarial Autoencoders

Multi-task self-supervised learning for Robust Speech Recognition

Learning Problem-agnostic Speech Representations from Multiple Self-supervised Tasks

Self-supervised audio representation learning for mobile devices

Multi-Task Self-Supervised Pre-Training for Music Classification

From Inference to Generation: End-to-end Fully Self-supervised Generation of Human Face from Speech

On permutation invariant training for speech source separation


Dingo: Deep inference for gravitational-wave observations

Real-time gravitational-wave science with neural posterior estimation

Neural Importance Sampling for Rapid and Reliable Gravitational-Wave Inference

Flow Matching for Scalable Simulation-Based Inference

Group equivariant neural posterior estimation

Evidence for eccentricity in the population of binary black holes
  observed by LIGO-Virgo-KAGRA

Dawning of a New Era in Gravitational Wave Data Analysis: Unveiling Cosmic Mysteries via Artificial Intelligence -- A Systematic Review

Self-supervised learning for gravitational wave signal identification


A tool that allows to get UMI counts from a single cell protein assay

Cell “hashing” with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells

An immune-cell signature of bacterial sepsis

Dynamics of the 4D genome during in vivo lineage specification and differentiation

A modified vaccinia Ankara vector-based vaccine protects macaques from SARS-CoV-2 infection, immune pathology, and dysfunction in the lungs

Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program

MYC deficiency impairs the development of effector/memory T lymphocytes

Physioxia-induced downregulation of Tet2 in hematopoietic stem cells contributes to enhanced self-renewal

Dissection of the 4D chromatin structure of the α-globin locus through in vivo erythroid differentiation with extreme spatial and temporal resolution

Defective LAT signalosome pathology in mice mimics human IgG4-related disease at single-cell level


keras implement of transformers for humans

ZLPR: A Novel Loss for Multi-label Classification

ELECTRA is a Zero-Shot Learner, Too

DACPGTN: Drug ATC Code Prediction Method Based on Graph Transformer Network for Drug Discovery

Development and Application of Knowledge Graphs for the Injection Molding Process

A Polyphone BERT for Polyphone Disambiguation in Mandarin Chinese


Enhancing {ggplot2} plots with statistical analysis

GRB10 and E2F3 as Diagnostic Markers of Osteoarthritis and Their Correlation with Immune Infiltration

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

Significant reduction in depressive symptoms among patients with moderately-severe to severe depressive symptoms after participation in a therapist-supported, evidence-based mobile health program delivered via a smartphone app

Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies

Distinct Profiles of 50 kHz Vocalizations Differentiate Between Social Versus Non-social Reward Approach and Consumption

Integrated Analysis of Tumor Mutation Burden and Immune Infiltrates in Hepatocellular Carcinoma

Identification of prognosis-related hub genes of ovarian cancer through bioinformatics analyses and experimental verification

Identification of Potential Key Biomarkers of Atrial Fibrillation and Their Correlation with Immune Infiltration in Atrial Tissue

Computational and mathematical methods in medicine

B2M is a Biomarker Associated With Immune Infiltration In High Altitude Pulmonary Edema

Combinatorial chemistry & high throughput screening

Bioinformatic Characterization of Whole Blood Neutrophils in Pelvic Inflammatory Disease: A Potential Prognostic Indicator for Transumbilical Single-Port Laparoscopic Pelvic Abscess Surgery


Simplest working implementation of Stylegan2, state of the art generative adversarial network, in Pytorch. Enabling everyone to experience disentanglement

Analyzing and Improving the Image Quality of StyleGAN

Efficient Attention: Attention with Linear Complexities

Gradient penalty from a maximum margin perspective

Text-only domain adaptation for end-to-end ASR using integrated text-to-mel-spectrogram generator

Assisting the Adversary to Improve GAN Training

An Empirical Study of the Effects of Sample-Mixing Methods for Efficient Training of Generative Adversarial Networks


An interactional aerodynamics and acoustics solver for multirotor aircraft and wind energy

High-Fidelity Modeling of Multirotor Aerodynamic Interactions for Aircraft Design

Modeling Multirotor Aerodynamic Interactions Through the Vortex Particle Method

Development of a Vortex Particle Code for the Modeling of Wake Interaction in Distributed Propulsion

On the Scope of Lagrangian Vortex Methods for Two-Dimensional Flow Simulations and the POD Technique Application for Data Storing and Analyzing


Source code for the LabelMe annotation tool.

Thermal Infrared Image Colorization for Nighttime Driving Scenes With Top-Down Guided Attention

Ship Detection under Complex Backgrounds Based on Accurate Rotated Anchor Boxes from Paired Semantic Segmentation

RT-Seg: A Real-Time Semantic Segmentation Network for Side-Scan Sonar Images

Rail Detection: An Efficient Row-based Network and A New Benchmark

Deep Learning on Ultrasound Images Visualizes the Femoral Nerve with Good Precision

A Cascaded Model Based on EfficientDet and YOLACT++ for Instance Segmentation of Cow Collar ID Tag in an Image

Developing a Free and Open-Source Semi-Automated Building Exterior Crack Inspection Software for Construction and Facility Managers

Video-based Smoky Vehicle Detection with A Coarse-to-Fine Framework

Nighttime Thermal Infrared Image Colorization with Feedback-based Object Appearance Learning


Public facing deeplift repo

Towards better understanding of gradient-based attribution methods for Deep Neural Networks

A unified view of gradient-based attribution methods for Deep Neural Networks

Human-grounded Evaluations of Explanation Methods for Text Classification

Explainable AI for Bioinformatics: Methods, Tools, and Applications

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

Interpreting Interpretations: Organizing Attribution Methods by Criteria

A Deep Neural Network for Gastric Cancer Prognosis Prediction Based on Biological Information Pathways

Challenges for cognitive decoding using deep learning methods

Genome Informatics 2016


QML: Quantum Machine Learning

Machine Learning Force Fields

Data‐Driven Materials Science: Status, Challenges, and Perspectives

Machine Learning for Electronically Excited States of Molecules

FCHL revisited: faster and more accurate quantum machine learning

Non-covalent interactions across organic and biological subsets of chemical space: Physics-based potentials parametrized from machine learning

On the role of gradients for machine learning of molecular energies and forces

Operators in quantum machine learning: Response properties in chemical space

IMPRESSION -- Prediction of NMR Parameters for 3-dimensional chemical structures using Machine Learning with near quantum chemical accuracy

Machine learning based energy-free structure predictions of molecules, transition states, and solids

Machine learning and excited-state molecular dynamics

Machine Learning: Science and Technology


EVA Series: Visual Representation Fantasies from BAAI

BLIP-2: Bootstrapping Language-Image Pre-training with Frozen Image Encoders and Large Language Models

EVA: Exploring the Limits of Masked Visual Representation Learning at Scale

EVA-CLIP: Improved Training Techniques for CLIP at Scale

EVA-02: A Visual Representation for Neon Genesis

Unleashing Vanilla Vision Transformer with Masked Image Modeling for Object Detection

EVA-CLIP-18B: Scaling CLIP to 18 Billion Parameters

Improved Baselines for Data-efficient Perceptual Augmentation of LLMs

Why are Visually-Grounded Language Models Bad at Image Classification?


IA's public Wayback Machine (moved from SourceForge)

Efficient construction of metadata-enhanced web corpora

Impact of URI Canonicalization on Memento Count

Difficulties of Timestamping Archived Web Pages

DaNewsroom: A Large-scale Danish Summarisation Dataset

PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION (LREC 2020)

ArchiveWeb: collaboratively extending and exploring web archive collections—How would you like to work with your collections?

International Journal on Digital Libraries

Replaying Archived Twitter: When your bird is broken, will it bring you down?

The Archive Query Log: Mining Millions of Search Result Pages of Hundreds of Search Engines from 25 Years of Web Archives

ArchiveWeb: Collaboratively Extending and Exploring Web Archive Collections

RESEARCH AND ADVANCED TECHNOLOGY FOR DIGITAL LIBRARIES, TPDL 2016

Making Changes in Webpages Discoverable: A Change-Text Search Interface for Web Archives

Extracting Information from Twitter Screenshots


Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions


pvcompare is a model for comparing the benefits of different PV technologies in local energy systems in different energy supply scenarios.


Blender addons to make the bridge between Blender and geographic data

Open Geospatial Software and Data: A Review of the Current State and A Perspective into the Future

ISPRS International Journal of Geo-Information

Ready Species One: Exploring the Use of Augmented Reality to Enhance Systematic Biology with a Revision of Fijian Strumigenys (Hymenoptera: Formicidae)

Usability of WebXR Visualizations in Urban Planning

TouchTerrain—3D Printable Terrain Models

Multispectral UAV Data and GPR Survey for Archeological Anomaly Detection Supporting 3D Reconstruction

Move The Object or Move The User: The Role of Interaction Techniques on Embodied Learning in VR

BRIDGING THE GAP: AN OPEN-SOURCE GIS+BIM SYSTEM FOR ARCHAEOLOGICAL DATA. THE CASE STUDY OF ALTINUM, ITALY

The international archives of the photogrammetry, remote sensing and spatial information sciences/International archives of the photogrammetry, remote sensing and spatial information sciences

ROOF3D: A REAL AND SYNTHETIC DATA COLLECTION FOR INDIVIDUAL BUILDING ROOF PLANE AND BUILDING SECTIONS DETECTION

ISPRS annals of the photogrammetry, remote sensing and spatial information sciences

Combining multiple shaded reliefs with hypsometric colouring and digital orthophotos using free and open-source software


zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

CancerSCEM: a database of single-cell expression map across various human cancers

Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals

High-throughput scNMT protocol for multiomics profiling of single cells from mouse brain and pancreatic organoids


A general-purpose encoder-decoder framework for Tensorflow

BLEURT: Learning Robust Metrics for Text Generation

Massive Exploration of Neural Machine Translation Architectures

Incremental Transformer with Deliberation Decoder for Document Grounded Conversations

Effective Domain Mixing for Neural Machine Translation

Proceedings of the Second Conference on Machine Translation

Wronging a Right: Generating Better Errors to Improve Grammatical Error Detection

Efficient Attention using a Fixed-Size Memory Representation

OpenNMT: Open-source Toolkit for Neural Machine Translation

Optimizing seed inputs in fuzzing with machine learning

Generation of Company descriptions using concept-to-text and text-to-text deep models: dataset collection and systems evaluation

International Conference on Natural Language Generation

A surprisingly effective out-of-the-box char2char model on the E2E NLG Challenge dataset

Annual Meeting of the Special Interest Group on Discourse and Dialogue


:earth_americas: Simple and fast watershed delineation in python.

A cross-scale study for compound flooding processes during Hurricane Florence

Natural hazards and earth system sciences

Hydrograph peak-shaving using a graph-theoretic algorithm for placement of hydraulic control structures

Ice volume and basal topography estimation using geostatistical methods and ground-penetrating radar measurements: application to the Tsanfleuron and Scex Rouge glaciers, Swiss Alps

Generating a Terrain-Robustness Benchmark for Legged Locomotion: A Prototype via Terrain Authoring and Active Learning


A workflow to build models of the European electricity system for Calliope.

Trade-Offs between Geographic Scale, Cost, and Infrastructure Requirements for Fully Renewable Electricity in Europe

euro-calliope: pre-built models

Harder, better, faster, stronger: understanding and improving the tractability of large energy system models


TFHE: Fast Fully Homomorphic Encryption Library over the Torus

A Survey on Homomorphic Encryption Schemes: Theory and Implementation

Fast Homomorphic Evaluation of Deep Discretized Neural Networks

Fully Homomorphic Encryption Encapsulated Difference Expansion for Reversible Data Hiding in Encrypted Domain

Privacy-preserving semi-parallel logistic regression training with fully homomorphic encryption

Efficient Privacy-Preserving Fingerprint-Based Authentication System Using Fully Homomorphic Encryption

Data Privacy in Trigger-Action Systems

SoK: Fully Homomorphic Encryption Accelerators

An Approach for Securing Cloud-Based Wide Area Monitoring of Smart Grid Systems


YOLOv4, YOLOv4-tiny, YOLOv3, YOLOv3-tiny Implemented in Tensorflow 2.0, Android. Convert YOLO v4 .weights tensorflow, tensorrt and tflite

YOLOv4: Optimal Speed and Accuracy of Object Detection

A Deep Learning Framework Performance Evaluation to Use YOLO in Nvidia Jetson Platform

Seed Phenotyping on Neural Networks using Domain Randomization and Transfer Learning

YOLO -- You only look 10647 times

PyMouseTracks: Flexible Computer Vision and RFID-Based System for Multiple Mouse Tracking and Behavioral Assessment

Iranian License Plate Recognition Using a Reliable Deep Learning Approach


A fortran package for analysis and diagnostics on NEMO ocean model output.

Climate and marine biogeochemistry during the Holocene from transient model simulations

On Constraining the Mesoscale Eddy Energy Dissipation Time‐Scale

The Impact of Tides on the Bay of Biscay Dynamics

Journal of Marine Science and Engineering

Ensemble quantification of short-term predictability of the ocean dynamics at kilometric-scale resolution: A Western Mediterranean test-case

Robust estimates for the decadal evolution of Agulhas leakage from the 1960s to the 2010s


A fast and robust point cloud registration library

TEASER: Fast and Certifiable Point Cloud Registration

Fast and Robust Iterative Closest Point

IEEE transactions on pattern analysis and machine intelligence

Graduated Non-Convexity for Robust Spatial Perception: From Non-Minimal Solvers to Global Outlier Rejection

International Conference on Robotics and Automation

A Polynomial-time Solution for Robust Registration with Extreme Outlier Rates

A Quaternion-based Certifiably Optimal Solution to the Wahba Problem with Outliers

A New Outlier Removal Strategy Based on Reliability of Correspondence Graph for Fast Point Cloud Registration

ARCS: Accurate Rotation and Correspondence Search

You Only Look at One: Category-Level Object Representations for Pose Estimation From a Single Example

Stress-Testing Point Cloud Registration on Automotive LiDAR


Separate repository for svSolver

Automated generation of 0D and 1D reduced-order models of patient-specific blood flow

A note on the accuracy of the generalized-alpha scheme for the incompressible Navier-Stokes equations

International Journal for Numerical Methods in Engineering

A reduced unified continuum formulation for vascular fluid–structure interaction

svMorph: Interactive geometry-editing tools for virtual patient-specific vascular anatomies

Rapid model-guided design of organ-scale synthetic vasculature for biomanufacturing

Bayesian Windkessel calibration using optimized 0D surrogate models


ELF: a platform for game research with AlphaGoZero/AlphaZero reimplementation

Playing the lottery with rewards and multiple languages: lottery tickets in RL and NLP

ELF OpenGo: An Analysis and Open Reimplementation of AlphaZero

Deep Reinforcement Learning

Practical Massively Parallel Monte-Carlo Tree Search Applied to Molecular Design

Artificial Intelligence for Games

Deep Pepper: Expert Iteration based Chess agent in the Reinforcement Learning Setting

Practical Large-Scale Distributed Parallel Monte-Carlo Tree Search Applied to Molecular Design.


SymSpell: 1 million times faster spelling correction & fuzzy search through Symmetric Delete spelling correction algorithm

Diverse values of nature for sustainability

Multimodal deep networks for text and image-based document classification

NeuSpell: A Neural Spelling Correction Toolkit

Characterizing the dynamics of learning in repeated reference games

Location Name Extraction from Targeted Text Streams using Gazetteer-based Statistical Language Models

Graph-based Event Extraction from Twitter

Recent Advances in Natural Language Processing

A Novel Approach for Detection and Ranking of Trendy and Emerging Cyber Threat Events in Twitter Streams

A context sensitive real-time Spell Checker with language adaptability

Predicting the Politics of an Image Using Webly Supervised Data

Spelling Correction with Denoising Transformer


An R package for adaptive shrinkage

False discovery rates: a new deal

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

A simple guide to de novo transcriptome assembly and annotation

Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum

Genetic influences on circulating retinol and its relationship to human health

DISSECTING TUMOR TRANSCRIPTIONAL HETEROGENEITY FROM SINGLE-CELL RNA-SEQ DATA BY GENERALIZED BINARY COVARIANCE DECOMPOSITION

bioRxiv : the preprint server for biology

Long-Term Maize-Legume Intercropping Shifts Structure and Composition of Soil Microbiome with Potential Impacts on Ecosystem Services and Food Safety

A novel framework to quantify uncertainty in peptide-tandem mass spectrum matches with application to nanobody peptide identification


SLAM performance evaluation framework

Introducing SLAMBench, a performance and accuracy benchmarking methodology for SLAM

SLAMBench2: Multi-Objective Head-to-Head Benchmarking for Visual SLAM

Robust SLAM Systems: Are We There Yet?

SLAMBooster: An Application-aware Controller for Approximation in SLAM


OpenMMLab optical flow toolbox and benchmark

FlowNet: Learning Optical Flow with Convolutional Networks

FlowNet 2.0: Evolution of Optical Flow Estimation with Deep Networks

PWC-Net: CNNs for Optical Flow Using Pyramid, Warping, and Cost Volume

RAFT: Recurrent All-Pairs Field Transforms for Optical Flow

LiteFlowNet: A Lightweight Convolutional Neural Network for Optical Flow Estimation

Learning to Estimate Hidden Motions with Global Motion Aggregation

Iterative Residual Refinement for Joint Optical Flow and Occlusion Estimation

MaskFlownet: Asymmetric Feature Matching with Learnable Occlusion Mask

A Lightweight Optical Flow CNN —Revisiting Data Fidelity and Regularization

PanoFlow: Learning 360° Optical Flow for Surrounding Temporal Understanding


The code of the Open Source Spatial Electrification Tool (OnSSET)


Finite Element Heat and Mass Transfer Code

Barometric Pumping Through Fractured Rock: A Mechanism for Venting Deep Methane to Mars' Atmosphere

Sub‐Diurnal Methane Variations on Mars Driven by Barometric Pumping and Planetary Boundary Layer Evolution

Journal of Geophysical Research: Planets


Novel Coronavirus 2019 time series data on cases

Excess deaths associated with covid-19 pandemic in 2020: age and sex disaggregated time series analysis in 29 high income countries

Neural Network Based Country Wise Risk Prediction of COVID-19

Preprinting the COVID-19 pandemic

Community movement and COVID-19: a global study using Google's Community Mobility Reports

Deep learning models for forecasting and analyzing the implications of COVID-19 spread on some commodities markets volatilities

Data Science and Machine Learning Integrated Implementation Patterns for Cavernous Knowledge Discovery from COVID-19 Data

IOP Conference Series: Materials Science and Engineering

Assessing the influence of climate on wintertime SARS-CoV-2 outbreaks

GLOBAL FORECASTING OF COVID-19 USING ARIMA BASED FB-PROPHET

International Journal of Engineering Applied Sciences and Technology

COVID-19 cases prediction in multiple areas via shapelet learning

Applied intelligence (Dordrecht, Netherlands)

A SEIR model with time-varying coefficients for analysing the SARS-CoV-2 epidemic