Flexible tool for bias detection, visualization, and mitigation

Fairness Beyond Disparate Treatment & Disparate Impact: Learning Classification without Disparate Mistreatment

fairmodels: A Flexible Tool For Bias Detection, Visualization, And Mitigation

Fairness Measures for Regression via Probabilistic Classification


A Riemannian Modification of Artifact Subspace Reconstruction for EEG Artifact Handling

Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach

Dynamics of directional tuning and reference frames in humans: A high-density EEG study

Neural and behavioral adaptations to frontal theta neurofeedback training: A proof of concept study

MuseStudio: Brain Activity Data Management Library for Low-Cost EEG Devices

An open-source human-in-the-loop BCI research framework: method and design

NeuXus: A Biosignal Processing and Classification Pipeline for Real-Time Brain-Computer Interaction

SigViewer: Visualizing Multimodal Signals Stored in XDF (Extensible Data Format) Files


scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network

Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review

基因组蛋白质组与生物信息学报

From single- to multi-omics: future research trends in medicinal plants

Deep Learning in Single-Cell Analysis

Reference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network


ABIDES: Agent-Based Interactive Discrete Event Simulation

Differentially Private Secure Multi-Party Computation for Federated Learning in Financial Applications

ABIDES: Towards High-Fidelity Market Simulation for AI Research.

Get Real: Realism Metrics for Robust Limit Order Book Market Simulations

Flamingo: Multi-Round Single-Server Secure Aggregation with Applications to Private Federated Learning

Explaining Agent-Based Financial Market Simulation

Robust Risk-Sensitive Reinforcement Learning Agents for Trading Markets


The plan validation system.

Vision-Language Interpreter for Robot Task Planning

AutoPlanBench: : Automatically generating benchmarks for LLM planners
  from PDDL


ChatYuan: Large Language Model for Dialogue in Chinese and English

A Survey of Large Language Models for Healthcare: from Data, Technology,
  and Applications to Accountability and Ethics

Zero-Shot Cross-Lingual Summarization via Large Language Models

MetaAID 2.0: An Extensible Framework for Developing Metaverse
  Applications via Human-controllable Pre-trained Models

CARE-MI: Chinese Benchmark for Misinformation Evaluation in Maternity
  and Infant Care

Understanding LLMs: A Comprehensive Overview from Training to Inference

Flames: Benchmarking Value Alignment of Chinese Large Language Models

SADAS: A Dialogue Assistant System Towards Remediating Norm Violations in Bilingual Socio-Cultural Conversations


Themis™ is a software fairness tester.

A comparative study of fairness-enhancing interventions in machine learning

Fairness Testing: Testing Software for Discrimination

Fairness Testing: A Comprehensive Survey and Analysis of Trends

Amazon SageMaker Clarify: Machine Learning Bias Detection and Explainability in the Cloud


Twitter stream + search API grabber

The rhythms of the night: increase in online night activity and emotional resilience during the spring 2020 Covid-19 lockdown

Assessing the influence of French vaccine critics during the two first
  years of the COVID-19 pandemic


A library for k-nearest neighbor search

ANN-Benchmarks: A Benchmarking Tool for Approximate Nearest Neighbor Algorithms

Fast Approximate Nearest Neighbor Search With The Navigating Spreading-out Graph

A Comprehensive Survey and Experimental Comparison of Graph-Based Approximate Nearest Neighbor Search

Optimization of Indexing Based on k-Nearest Neighbor Graph for Proximity Search in High-dimensional Data.

A Revisit of Hashing Algorithms for Approximate Nearest Neighbor Search

High Dimensional Similarity Search with Satellite System Graph: Efficiency, Scalability, and Unindexed Query Compatibility

Approximate Nearest Neighbor Search on High Dimensional Data ---
  Experiments, Analyses, and Improvement (v1.0)

Flexible retrieval with NMSLIB and FlexNeuART

Fast Cosine Similarity Search in Binary Space with Angular Multi-Index Hashing

Large-Scale Visual Search with Binary Distributed Graph at Alibaba

PROCEEDINGS OF THE 28TH ACM INTERNATIONAL CONFERENCE ON INFORMATION & KNOWLEDGE MANAGEMENT (CIKM '19)


High-performance implementation of SLIM-based approaches for Top-N recommendation

Boosting Item-based Collaborative Filtering via Nearly Uncoupled Random Walks

Local Collaborative Autoencoders

Differentiable Ranking Metric Using Relaxed Sorting for Top-K Recommendation

A Differentiable Ranking Metric Using Relaxed Sorting Opeartion for Top-K Recommender Systems.


Repository for benchmarking graph neural networks

Do Transformers Really Perform Bad for Graph Representation?

Benchmarking Graph Neural Networks

Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting

Adversarial Graph Augmentation to Improve Graph Contrastive Learning

Graph Neural Networks with Local Graph Parameters

Learning Graph Normalization for Graph Neural Networks

Debiasing Graph Neural Networks via Learning Disentangled Causal
  Substructure

Walking Out of the Weisfeiler Leman Hierarchy: Graph Learning Beyond
  Message Passing

On Structural Expressive Power of Graph Transformers


Guess gender from first name in Python 2 and 3

A Bag of Tricks for Dialogue Summarization

Worldwide Gender Differences in Public Code Contributions and how they have been affected by the COVID-19 pandemic

Proceedings of the 2022 ACM/IEEE 44th International Conference on Software Engineering: Software Engineering in Society

Authorship in top-ranked mathematical and physical journals: Role of gender on self-perceptions and bibliographic evidence

Gender-Related Differences in Online Comment Sections: Findings From a Large-Scale Content Analysis of Commenting Behavior

Bias, Fairness, and Accountability with AI and ML Algorithms

From Asking to Answering: Getting More Involved on Stack Overflow


Models and datasets for perturbational single-cell omics

Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens

A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response

Pooled CRISPR screening with single-cell transcriptome read-out

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens

Massively multiplex chemical transcriptomics at single-cell resolution

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes

On the design of CRISPR-based single cell molecular screens

A curated database reveals trends in single-cell transcriptomics

Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing


TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

TSA-Seq 2.0 reveals both conserved and variable chromosomal distances to nuclear speckles

Topologically Associating Domain Boundaries are Commonly Required for Normal Genome Function

Axon guidance genes modulate neurotoxicity of ALS-associated UBQLN2

Integrated 3D genome, epigenome and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice


ORB-SLAM3: An Accurate Open-Source Library for Visual, Visual-Inertial and Multi-Map SLAM

VideoDex: Learning Dexterity from Internet Videos

Panoptic Segmentation Forecasting

INS/LIDAR/Stereo SLAM Integration for Precision Navigation in GNSS-Denied Environments

A Multi-modal Garden Dataset and Hybrid 3D Dense Reconstruction
  Framework Based on Panoramic Stereo Images for a Trimming Robot


Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

Massive migration from the steppe was a source for Indo-European languages in Europe

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

Ancient human genomes suggest three ancestral populations for present-day Europeans

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

High-frequency, precise modification of the tomato genome

AdapterRemoval: easy cleaning of next-generation sequencing reads

Ultrasmall copper-based nanoparticles for reactive oxygen species scavenging and alleviation of inflammation related diseases

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan


Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Universal Masking is Urgent in the COVID-19 Pandemic: SEIR and Agent Based Models, Empirical Validation, Policy Recommendations

Adaptive cyclic exit strategies from lockdown to suppress COVID-19 and allow economic activity

A social network model of COVID-19

Structural Identifiability and Observability of Compartmental Models of
  the COVID-19 Pandemic

Analysis of mobility data to build contact networks for COVID-19

A Two-Phase Stochastic Dynamic Model for COVID-19 Mid-Term Policy Recommendations in Greece: A Pathway towards Mass Vaccination

Assessing the interplay between travel patterns and SARS-CoV-2 outbreak in realistic urban setting

Optimizing testing policies for detecting COVID-19 outbreaks

Estimating Brazilian states’ demands for intensive care unit and clinical hospital beds during the COVID-19 pandemic: development of a predictive model

Prioritizing vaccination based on analysis of community networks


Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.

Results of the 2020 fastMRI Challenge for Machine Learning MR Image Reconstruction

Benchmarking MRI Reconstruction Neural Networks on Large Public Datasets

Pyramid Convolutional RNN for MRI Image Reconstruction

XPDNet for MRI Reconstruction: an application to the 2020 fastMRI challenge

Density Compensated Unrolled Networks for Non-Cartesian MRI Reconstruction

Is good old GRAPPA dead?


The Graph-Cut RANSAC algorithm proposed in paper: Daniel Barath and Jiri Matas; Graph-Cut RANSAC, Conference on Computer Vision and Pattern Recognition, 2018. It is available at http://openaccess.thecvf.com/content_cvpr_2018/papers/Barath_Graph-Cut_RANSAC_CVPR_2018_paper.pdf

Image Matching Across Wide Baselines: From Paper to Practice

International journal of computer vision

Graph-Cut RANSAC

EPOS: Estimating 6D Pose of Objects with Symmetries

MAGSAC++, a fast, reliable and accurate robust estimator

Progressive-X: Efficient, Anytime, Multi-Model Fitting Algorithm

Five-point Fundamental Matrix Estimation for Uncalibrated Cameras

Homography from two orientation- and scale-covariant features

Graph-Cut RANSAC: Local Optimization on Spatially Coherent Structures

IEEE transactions on pattern analysis and machine intelligence

Relative planar motion for vehicle-mounted cameras from a single affine correspondence

RANSAC for Robotic Applications: A Survey


A curated list of awesome Active Learning

Active Learning

Synthesis lectures on artificial intelligence and machine learning

Consistency-based Semi-supervised Active Learning: Towards Minimizing
  Labeling Cost

Active Semi-Supervised Learning Using Sampling Theory for Graph Signals

Ask me better questions: active learning queries based on rule induction

Active learning using on-line algorithms

Deep Reinforcement Active Learning for Medical Image Classification

Medical Image Computing and Computer-Assisted Intervention


Language Models are Multilingual Chain-of-Thought Reasoners

Square One Bias in NLP: Towards a Multi-Dimensional Exploration of the Research Manifold

Writing System and Speaker Metadata for 2,800+ Language Varieties

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION

Bilex Rx: Lexical Data Augmentation for Massively Multilingual Machine
  Translation

TaTa: A Multilingual Table-to-Text Dataset for African Languages

Diffusion Language Models Can Perform Many Tasks with Scaling and
  Instruction-Finetuning

GlotScript: A Resource and Tool for Low Resource Writing System
  Identification


Models to perform neural summarization (extractive and abstractive) using machine learning transformers and a tool to convert abstractive summarization datasets to the extractive task.

BART: Denoising Sequence-to-Sequence Pre-training for Natural Language
  Generation, Translation, and Comprehension

Text Summarization with Pretrained Encoders

Fine-tune BERT for Extractive Summarization

Extractive Summarization as Text Matching

A comprehensive review of automatic text summarization techniques: method, data, evaluation and coding

Keyphrase Extraction from Scientific Articles via Extractive Summarization

Proceedings of the Second Workshop on Scholarly Document Processing

IDN-Sum: A New Dataset for Interactive Digital Narrative Extractive Text Summarisation


(Python, R, C/C++) Isolation Forest and variations such as SCiForest and EIF, with some additions (outlier detection + similarity + NA imputation)

Extended Isolation Forest

IEEE transactions on knowledge and data engineering

Isolation Kernel and Its Effect on SVM

Randomized outlier detection with trees

Distance approximation using Isolation Forests

Revisiting randomized choices in isolation forests

Imputing missing values with unsupervised random trees

Isolation forests: looking beyond tree depth


Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.


Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

A Reference Genome Sequence for Giant Sequoia

Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)

Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer

Topologically associating domains and their role in the evolution of genome structure and function in Drosophila

Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts

Computational and structural biotechnology journal

Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin

Chromosome-level assembly of the Caenorhabditis remanei genome reveals conserved patterns of nematode genome organization

Six new reference-quality bat genomes illuminate the molecular basis and evolution of bat adaptations

Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I


Zero-1-to-3: Zero-shot One Image to 3D Object (ICCV 2023)

NeRDi: Single-View NeRF Synthesis with Language-Guided Diffusion as General Image Priors

Consistent-1-to-3: Consistent Image to 3D View Synthesis via
  Geometry-aware Diffusion Models

iNVS: Repurposing Diffusion Inpainters for Novel View Synthesis

GeoDream: Disentangling 2D and Geometric Priors for High-Fidelity and
  Consistent 3D Generation

Free3D: Consistent Novel View Synthesis without 3D Representation


Code for reco-gym: A Reinforcement Learning Environment for the problem of Product Recommendation in Online Advertising

RecoGym: A Reinforcement Learning Environment for the problem of Product Recommendation in Online Advertising

Open Bandit Dataset and Pipeline: Towards Realistic and Reproducible Off-Policy Evaluation

RL4RS: A Real-World Dataset for Reinforcement Learning based Recommender System

Improving Long-Term Metrics in Recommendation Systems using Short-Horizon Reinforcement Learning

Examining Policy Entropy of Reinforcement Learning Agents for
  Personalization Tasks


PANNs: Large-Scale Pretrained Audio Neural Networks for Audio Pattern Recognition

Large-scale Contrastive Language-Audio Pretraining with Feature Fusion and Keyword-to-Caption Augmentation

Source separation with weakly labelled data: An approach to
  computational auditory scene analysis


Dynamic hydrology-hydraulic water quality simulation model

Hydrograph peak-shaving using a graph-theoretic algorithm for placement of hydraulic control structures


It is a forest of random projection trees

ANN-Benchmarks: A Benchmarking Tool for Approximate Nearest Neighbor Algorithms

Approximate kNN Classification for Biomedical Data

ParlayANN: Scalable and Deterministic Parallel Graph-Based Approximate Nearest Neighbor Search Algorithms

Medical image retrieval via nearest neighbor search on pre-trained image features

Exact and/or Fast Nearest Neighbors.

A Survey on Efficient Processing of Similarity Queries over Neural Embeddings


Prevent oil and gas companies from co-opting your work and extracting more fossil fuels with this software license.


Python Implementations of Word Sense Disambiguation (WSD) Technologies.

LEXenstein: A Framework for Lexical Simplification

PROCEEDINGS OF THE 53RD ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS AND THE 7TH INTERNATIONAL JOINT CONFERENCE ON NATURAL LANGUAGE PROCESSING (ACL-IJCNLP 2015): SYSTEM DEMONSTRATIONS

UNAL-NLP: Combining Soft Cardinality Features for Semantic Textual Similarity, Relatedness and Entailment

International Workshop on Semantic Evaluation

A Neural Approach to Pun Generation

PROCEEDINGS OF THE 56TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL), VOL 1

Calculating the similarity between words and sentences using a lexical database and corpus statistics.

Syn-QG: Syntactic and Shallow Semantic Rules for Question Generation

How to Avoid Sentences Spelling Boring? Towards a Neural Approach to Unsupervised Metaphor Generation

North American Chapter of the Association for Computational Linguistics

Pun-GAN: Generative Adversarial Network for Pun Generation

Data Augmentation in a Hybrid Approach for Aspect-Based Sentiment Analysis

Weisfeiler-Leman in the BAMBOO: Novel AMR Graph Metrics and a Benchmark
  for AMR Graph Similarity

An Unsupervised Word Sense Disambiguation System for Under-Resourced Languages


Implementation for the paper "Compositional Attention Networks for Machine Reasoning" (Hudson and Manning, ICLR 2018)

GQA: A New Dataset for Real-World Visual Reasoning and Compositional Question Answering

Learning by Abstraction: The Neural State Machine

Attention on Abstract Visual Reasoning

Differentiable Adaptive Computation Time for Visual Reasoning

Learning Dynamics of Attention: Human Prior for Interpretable Machine Reasoning


Improved version of DBow2

A LiDAR/Visual SLAM Backend with Loop Closure Detection and Graph Optimization

Panoramic annular SLAM with loop closure and global optimization

Visual Features Assisted Robot Localization in Symmetrical Environment Using Laser SLAM

OpenMPR: Recognize places using multimodal data for people with visual impairments

NYU-VPR: Long-Term Visual Place Recognition Benchmark with View Direction and Data Anonymization Influences

Lightweight Object-level Topological Semantic Mapping and Long-term
  Global Localization based on Graph Matching

Integrating Sparse Learning-Based Feature Detectors into Simultaneous Localization and Mapping—A Benchmark Study


For calculating global feature importance using Shapley values.

Understanding Global Feature Contributions With Additive Importance Measures

Explaining by Removing: A Unified Framework for Model Explanation

Improving KernelSHAP: Practical Shapley Value Estimation via Linear Regression

Shapley variable importance clouds for interpretable machine learning

DCI-ES: An Extended Disentanglement Framework with Connections to
  Identifiability

Marginal Contribution Feature Importance -- an Axiomatic Approach for
  The Natural Case


Most popular metrics used to evaluate object detection algorithms.

A Survey on Performance Metrics for Object-Detection Algorithms

PROCEEDINGS OF THE 2020 INTERNATIONAL CONFERENCE ON SYSTEMS, SIGNALS AND IMAGE PROCESSING (IWSSIP), 27TH EDITION

A Comparative Analysis of Object Detection Metrics with a Companion Open-Source Toolkit

Fast Personal Protective Equipment Detection for Real Construction Sites Using Deep Learning Approaches

NDFTC: A New Detection Framework of Tropical Cyclones from Meteorological Satellite Images with Deep Transfer Learning

Flipping food during grilling tasks, a dataset of utensils kinematics and dynamics, food pose and subject gaze

Surround-View Cameras based Holistic Visual Perception for Automated
  Driving


A curated list of ground-truth forest datasets for the machine learning and forestry community.

TRY – a global database of plant traits

The global forest above-ground biomass pool for 2010 estimated from high-resolution satellite observations

BAAD: a Biomass And Allometry Database for woody plants


Get hourly meteorological data from one of thousands of global stations

COVID-19 pandemic dynamics in South Africa and epidemiological characteristics of three variants of concern (Beta, Delta, and Omicron)

medRxiv : the preprint server for health sciences

Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010–2014

Proceedings of the National Academy of Sciences of the United States of America


R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

Massive mining of publicly available RNA-seq data from human and mouse

Metabolic landscape of the tumor microenvironment at single cell resolution

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development

t-Distributed Stochastic Neighbor Embedding (t-SNE): A tool for eco-physiological transcriptomic analysis

Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy

Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson’s disease

Emerging genetic diversity among clinical isolates of SARS-CoV-2: Lessons for today

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

FoxA1 and FoxA2 drive gastric differentiation and suppress squamous identity in NKX2-1-negative lung cancer

Retinoblastoma from human stem cell-derived retinal organoids


[ICCV 2021 Oral] PoinTr: Diverse Point Cloud Completion with Geometry-Aware Transformers

SnowflakeNet: Point Cloud Completion by Snowflake Point Deconvolution with Skip-Transformer

AdaPoinTr: Diverse Point Cloud Completion With Adaptive Geometry-Aware Transformers


High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies

bioRxiv : the preprint server for biology

Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection

Phage ImmunoPrecipitation Sequencing (PhIP-Seq): The Promise of High Throughput Serology


This is the moment for probabilistic loops

Solving Invariant Generation for Unsolvable Loops


MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is a facility instrument designed for the 10.4m GTC telescope in La Palma (Spain).

The 60 pc Environment of FRB 20180916B

NGC 7469 as seen by MEGARA: new results from high-resolution IFU spectroscopy

Monthly notices of the Royal Astronomical Society

TXS 2116−077: A Gamma-Ray Emitting Relativistic Jet Hosted in a Galaxy Merger

MEGARA-GTC stellar spectral library – II. MEGASTAR first release

Monthly Notices of the Royal Astronomical Society

Spatially-resolved properties of the ionized gas in the HII galaxy
  J084220+115000


PineAPPL is not an extension of APPLgrid

PineAPPL: combining EW and QCD corrections for fast evaluation of LHC processes

The Journal of high energy physics/The journal of high energy physics


Access to Biological Collection Data (ABCD)

Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?

A story of data won, data lost and data re-found: the realities of ecological data preservation

ABCD 3.0 Ready to Use

Biodiversity Information Science and Standards

Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology


BISulfite-seq CUI Toolkit

Focal disruption of DNA methylation dynamics at enhancers in IDH-mutant AML cells

Performance comparisons of methylation and structural variants from low-input whole-genome methylation sequencing

Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing


This is CASA eMERLIN pipeline to calibrate data from the e-MERLIN array. Please fork the repository before making any changes and read the Coding Practices page in the wiki. Please add issues with the pipeline in the issues tab.

Investigating the spectral age problem with powerful radio galaxies

WISDOM project – VIII. Multiscale feedback cycles in the brightest cluster galaxy NGC 0708

Software and Techniques for VLBI Data Processing and Analysis

VLBI observations of GRB 201015A, a relatively faint GRB with a hint of very high-energy gamma-ray emission

An early peak in the radio light curve of short-duration gamma-ray burst 200826A

Sub-kpc radio jets in the brightest central galaxy of the cool-core galaxy cluster RXJ1720.1+2638

Radio jets in NGC 1068 with e-MERLIN and VLA: structure and morphology


Official Implement of "ADBench: Anomaly Detection Benchmark", NeurIPS 2022.

ADBench: Anomaly Detection Benchmark

Deep Anomaly Detection under Labeling Budget Constraints

Zero-Shot Anomaly Detection via Batch Normalization

TOD: GPU-accelerated Outlier Detection via Tensor Operations

OptIForest: Optimal Isolation Forest for Anomaly Detection

Calculating the matrix profile from noisy data


Metagenomics-focused BAM file manipulation

Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities

Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep

Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations

Moisture Modulates Soil Reservoirs of Active DNA and RNA Viruses

Zenodo (CERN European Organization for Nuclear Research)

Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment

Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community

Continuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice


Easy and versatile open-source  code to explore Kepler, K2 and TESS data in the search for exoplanets

GJ 273: on the formation, dynamical evolution, and habitability of a planetary system hosted by an M dwarf at 3.75 parsec

Two temperate super-Earths transiting a nearby late-type M dwarf

A large sub-Neptune transiting the thick-disk M4 V TOI-2406

A transit survey to search for planets around hot subdwarfs: I. methods and performance tests on light curves from Kepler, K2, TESS, and CHEOPS

Keele Research Repository (Keele University)

TOI-2257 b: A highly eccentric long-period sub-Neptune transiting a nearby M dwarf

The HD 260655 system: Two rocky worlds transiting a bright M dwarf at 10 pc

A super-Earth and a mini-Neptune near the 2:1 MMR straddling the radius valley around the nearby mid-M dwarf TOI-2096

Two super-Earths at the edge of the habitable zone of the nearby M dwarf
  TOI-2095

TOI-2084 b and TOI-4184 b: Two new sub-Neptunes around M dwarf stars

Refining the properties of the TOI-178 system with CHEOPS and TESS


A package to calculate ensemble averaged waves in heterogeneous materials. The focus is on wave propagation, scattering, and reflection, from particulate and porous materials.

A proof that multiple waves propagate in ensemble-averaged particulate materials

Multiple Waves Propagate in Random Particulate Materials

Reflection from a multi-species material and its transmitted effective wavenumber

Proceedings. Mathematical, physical, and engineering sciences

The average transmitted wave in random particulate materials


Tools and Modeling Code for the MASSIVE dataset

MASSIVE: A 1M-Example Multilingual Natural Language Understanding Dataset with 51 Typologically-Diverse Languages

Transcending the "Male Code": Implicit Masculine Biases in NLP Contexts

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems

Efficiently Aligned Cross-Lingual Transfer Learning for Conversational
  Tasks using Prompt-Tuning


Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of "Not Evaluated" species, for any taxon or geographic region of interest. https://iucnn.github.io/IUCNN/

Automated conservation assessment of the orchid family with deep learning

IUCNN – Deep learning approaches to approximate species' extinction risk


Holistically-Attracted Wireframe Parsing [TPAMI'23] & [CVPR' 20]

HEAT: Holistic Edge Attention Transformer for Structured Reconstruction

A Comprehensive Review of Image Line Segment Detection and Description:
  Taxonomies, Comparisons, and Challenges


Python implementation of the METRIC model


Github repo for Jerasure Library - C Implementation of Reed-Solomon coding

Proofs of Writing for Efficient and Robust Storage

Commune: Shared Ownership in an Agnostic Cloud

Design of a Resilient, High-Throughput, Persistent Storage System for the ATLAS Phase-II DAQ System


Simple and extensible GAN image-to-image translation framework. Supports natural and medical images.

Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks

Contrastive Learning for Unpaired Image-to-Image Translation

Reversible GANs for Memory-efficient Image-to-Image Translation


Open Generation, Storage, and Transmission Operation and Expansion Planning Model with RES and ESS (openTEPES)


Bayesian inference in HSMMs and HMMs

Bayesian nonparametric hidden semi-Markov models

Driving Style Analysis Using Primitive Driving Patterns With Bayesian Nonparametric Approaches

Segmenting accelerometer data from daily life with unsupervised machine learning

Sniff-synchronized, gradient-guided olfactory search by freely moving mice

Unsupervised Incremental Learning and Prediction of Music Signals

IEEE/ACM transactions on audio, speech, and language processing

Temporally-Reweighted Chinese Restaurant Process Mixtures for Clustering, Imputing, and Forecasting Multivariate Time Series


PyTorch Implementation of BioBERT

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?

IEEE access : practical innovations, open solutions

LIQUID: A Framework for List Question Answering Dataset Generation

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information

2022 IEEE International Conference on Big Data (Big Data)

Simple Questions Generate Named Entity Recognition Datasets

Regularization for Long Named Entity Recognition

EasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and
  Dictionary-based Named Entity Recognition from Medical Text


Tool suite for analysing molecular dynamics trajectories using network analysis and PRS

MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamics

Novel dynamic residue network analysis approaches to study allosteric modulation: SARS-CoV-2 Mpro and its evolutionary mutations as a case study

Computational and structural biotechnology journal

Allosteric pockets and dynamic residue network hubs of falcipain 2 in mutations including those linked to artemisinin resistance

Evolutionary progression of collective mutations in Omicron sub-lineages towards efficient RBD-hACE2: Allosteric communications between and within viral and human proteins


A code to estimate transport coefficients from the cepstral analysis of a (multi)variate current stationary time series -- [FKA "thermocepstrum"]

Heat transport in liquid water from first-principles and deep neural network simulations

Heat and charge transport in H2O at ice-giant conditions from ab initio molecular dynamics simulations

Invariance principles in the theory and computation of transport coefficients

The European physical journal. B, Condensed matter physics/European physical journal. B, Condensed matter and complex systems

SporTran: A code to estimate transport coefficients from the cepstral analysis of (multivariate) current time series

QEHeat: An open-source energy flux calculator for the computation of heat-transport coefficients from first principles


Learning to See in the Dark. CVPR 2018

Learning to See in the Dark

CNN-generated images are surprisingly easy to spot... for now

Seeing Motion in the Dark

International Conference on Computer Vision

Countering Malicious DeepFakes: Survey, Battleground, and Horizon


SolTrace


Patterns and behaviors for GPU computing

A Memory Bandwidth-Efficient Hybrid Radix Sort on GPUs

SIGMOD'17: PROCEEDINGS OF THE 2017 ACM INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA

GPU acceleration of ADMM for large-scale quadratic programming

Journal of parallel and distributed computing

GPU LSM: A Dynamic Dictionary Data Structure for the GPU

MetaCache-GPU: Ultra-Fast Metagenomic Classification

Euler Meets GPU: Practical Graph Algorithms with Theoretical Guarantees


Naszilla is a Python library for neural architecture search (NAS)

BANANAS: Bayesian Optimization with Neural Architectures for Neural Architecture Search

A Study on Encodings for Neural Architecture Search

Exploring the Loss Landscape in Neural Architecture Search

Surrogate-assisted evolutionary neural architecture search with network embedding

B2EA: An Evolutionary Algorithm Assisted by Two Bayesian Optimization
  Modules for Neural Architecture Search

Shortest Edit Path Crossover: A Theory-driven Solution to the
  Permutation Problem in Evolutionary Neural Architecture Search


Multimodal model for text and tabular data with HuggingFace transformers as building block for text data

MultiBench: Multiscale Benchmarks for Multimodal Representation Learning

A Package for Learning on Tabular and Text Data with Transformers

Proceedings of the Third Workshop on Multimodal Artificial Intelligence

High-Modality Multimodal Transformer: Quantifying Modality & Interaction
  Heterogeneity for High-Modality Representation Learning


Genetic Programming version of GOMEA. Also includes standard tree-based GP, and Semantic Backpropagation-based GP

Contemporary Symbolic Regression Methods and their Relative Performance

Model-based Genetic Programming with GOMEA for Symbolic Regression of Small Expressions

Machine learning for automatic construction of pseudo-realistic
  pediatric abdominal phantoms


A Python toolkit for running and coupling Earth surface models


The Aegean source finding program and associated tools

GaLactic and Extragalactic All-sky Murchison Widefield Array (GLEAM) survey - I. A low-frequency extragalactic catalogue

Extragalactic Peaked-spectrum Radio Sources at Low Frequencies

The 154 MHz radio sky observed by the Murchison Widefield Array: noise, confusion and first source count analyses

The ASKAP/EMU Source Finding Data Challenge

Publications of the Astronomical Society of Australia/Publications Astronomical Society of Australia

GaLactic and Extragalactic All-sky Murchison Widefield Array (GLEAM)
  survey II: Galactic Plane 345^∘ < l < 67^∘, 180^∘ < l <
  240^∘

Interplanetary scintillation studies with the Murchison Widefield Array - II. Properties of sub-arcsecond compact sources at low radio frequencies

Monthly Notices of the Royal Astronomical Society

Low-Frequency Spectral Energy Distributions of Radio Pulsars Detected with the Murchison Widefield Array

Remnant radio galaxies discovered in a multi-frequency survey

A study of halo and relic radio emission in merging clusters using the Murchison Widefield Array

The GLEAM 4-Jy (G4Jy) Sample: I. Definition and the catalogue


Tools for tissue image stain normalisation and augmentation in Python 3

Predicting molecular phenotypes from histopathology images: a
  transcriptome-wide expression-morphology analysis in breast cancer

HistoCartography: A Toolkit for Graph Analytics in Digital Pathology

Artificial Intelligence-based Tumor Segmentation in Mouse Models of Lung Adenocarcinoma

Predicting colorectal cancer microsatellite instability with a self-attention-enabled convolutional neural network

Towards a representative reference for MRI-based human axon radius assessment using light microscopy

Hybrid guiding: A multi-resolution refinement approach for semantic
  segmentation of gigapixel histopathological images

Breast cancer histopathology image-based gene expression prediction using spatial transcriptomics data and deep learning

Multi-domain stain normalization for digital pathology: A
  cycle-consistent adversarial network for whole slide images


Sandbox for celestial mechanics calculations

REBOUNDx: a library for adding conservative and dissipative forces to otherwise symplectic N-body integrations

Monthly notices of the Royal Astronomical Society

Predicting the long-term stability of compact multiplanet systems

Fundamental limits from chaos on instability time predictions in compact planetary systems

A Criterion for the Onset of Chaos in Compact, Eccentric Multiplanet Systems

How Close are Compact Multi-Planet Systems to the Stability Limit?

Modeling Radial Velocity Data of Resonant Planets to Infer Migration Histories

Stability Constrained Characterization of the 23 Myr Old V1298 Tau System: Do Young Planets Form in Mean Motion Resonance Chains?

Period Ratio Sculpting near Second-order Mean-motion Resonances

celmech: A Python Package for Celestial Mechanics


Full list of bad words and top swear words banned by Google.

Machine Learning Suites for Online Toxicity Detection

AlexU-BackTranslation-TL at SemEval-2020 Task 12: Improving Offensive Language Detection Using Data Augmentation and Transfer Learning

International Workshop on Semantic Evaluation

MemeCap: A Dataset for Captioning and Interpreting Memes


This repository contains the source code for the semantic image segmentation method described in the ICCV 2015 paper: Conditional Random Fields as Recurrent Neural Networks. http://crfasrnn.torr.vision/

On the Robustness of Semantic Segmentation Models to Adversarial Attacks

ModaNet: A Large-Scale Street Fashion Dataset with Polygon Annotations


The Distributed Generation Market Demand (dGen) model simulates customer adoption of distributed energy resources (DERs) for residential, commercial, and industrial entities in the United States and other countries.

Forecasting distributed energy resources adoption for power systems


Path diagrams and visual analysis of various SEM packages' output

The Relationship between English Language Learner Characteristics and Online Self-regulation: A Structural Equation Modeling Approach

strum: an R package for structural modeling of latent variables for general pedigrees

Genetic Relationships Among Physiological Processes, Phenology, and Grain Yield Offer an Insight Into the Development of New Cultivars in Soybean (Glycine max L. Merr)

Health-Related Behaviors in Adolescents Mediate the Association between Subjective Social Status and Body Mass Index

International journal of environmental research and public health

The Italian version of the mobile phone problematic use scale for adults (MPPUS): A validation study

A longitudinal model for psychological distress in the COVID-19 crisis among brazilian graduate students

The Validity and Reliability of the Malay Version of the Cyberbullying Scale among Secondary School Adolescents in Malaysia

The Grid of Burnout, Engagement and Job Satisfaction: a Case Study in Greece

International journal of human resource studies

Medición y comparación de la actitud docente hacia la salud mental en la escuela (Measurement and comparison of teacher attitude towards mental health in school)

Retos: nuevas tendencias en educación física, deporte y recreación


Python library for CMA Evolution Strategy.

Warm Starting CMA-ES for Hyperparameter Optimization

Rethinking Optimization with Differentiable Simulation from a Global
  Perspective

CMA-ES with Learning Rate Adaptation: Can CMA-ES with Default Population Size Solve Multimodal and Noisy Problems?

Proceedings of the Genetic and Evolutionary Computation Conference

cmaes : A Simple yet Practical Python Library for CMA-ES

Quantum computer based feature selection in machine learning

An Optimization-based Baseline for Rigid 2D/3D Registration Applied to Spine Surgical Navigation Using CMA-ES


Declarative, On-Device Machine Learning for iOS, Android, and React Native. Deploy. Predict. Train.

Federated Learning for Healthcare Informatics

A comprehensive review of federated learning for COVID‐19 detection

International journal of intelligent systems

Reviewing Federated Machine Learning and Its Use in Diseases Prediction

OpenFed: A Comprehensive and Versatile Open-Source Federated Learning Framework


Implementation of RETRO, Deepmind's Retrieval based Attention net, in Pytorch

Improving language models by retrieving from trillions of tokens

DeepNet: Scaling Transformers to 1,000 Layers

Copy Is All You Need

Current Limitations of Language Models: What You Need is Retrieval

Retrieval is Accurate Generation


Benchmark your model on out-of-distribution datasets with carefully collected human comparison data (NeurIPS 2021 Oral)

Scaling Up Your Kernels to 31x31: Revisiting Large Kernel Design in CNNs

Last Layer Re-Training is Sufficient for Robustness to Spurious
  Correlations

Partial success in closing the gap between human and machine vision

UniRepLKNet: A Universal Perception Large-Kernel ConvNet for Audio,
  Video, Point Cloud, Time-Series and Image Recognition

FFT-based Dynamic Token Mixer for Vision


Keras/Pytorch implementation of N-BEATS: Neural basis expansion analysis for interpretable time series forecasting.

Spectral Temporal Graph Neural Network for Multivariate Time-series Forecasting

Simultaneously Reconciled Quantile Forecasting of Hierarchically Related Time Series

A deep learning approach to solar radio flux forecasting

End-to-End Modeling of Hierarchical Time Series Using Autoregressive Transformer and Conditional Normalizing Flow-based Reconciliation

Full Scaling Automation for Sustainable Development of Green Data Centers

SLOTH: Structured Learning and Task-based Optimization for Time Series
  Forecasting on Hierarchies


Easy to use extractive text summarization with BERT

Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks

Leveraging BERT for Extractive Text Summarization on Lectures

DepressionNet: A Novel Summarization Boosted Deep Framework for Depression Detection on Social Media

SIGIR '21 - PROCEEDINGS OF THE 44TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

Connecting the Dots Between Fact Verification and Fake News Detection

ConceptEVA: Concept-Based Interactive Exploration and Customization of Document Summaries

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems

Nutri-bullets: Summarizing Health Studies by Composing Segments

Quantifying the Suicidal Tendency on Social Media: A Survey

Shaping Political Discourse using multi-source News Summarization


Similarity or Distance Metrics, e.g. Levenshtein, for Java

Distributed representations of tuples for entity resolution

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain

Introducing CitedReferencesExplorer (CRExplorer): A program for reference publication year spectroscopy with cited references standardization

Generating Concise Entity Matching Rules

Automatic Ontology Construction Using Text Corpora and Ontology Design Patterns (ODPs) in Alzheimer’s Disease

Jurnal ilmu komputer dan informasi (Journal of computer science and information)/Jurnal Ilmu Komputer dan Informasi

Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents

BMC medical informatics and decision making

UoW: Multi-task Learning Gaussian Process for Semantic Textual Similarity

Private Exploration Primitives for Data Cleaning.

Bipartite Graph Matching Algorithms for Clean-Clean Entity Resolution:
  An Empirical Evaluation

SEPDA@ISWC - An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines.


Multi-modal features toolkit in Python

Learning Multimodal Word Representation via Dynamic Fusion Methods

Speaking, Seeing, Understanding: Correlating semantic models with conceptual representation in the brain

Empirical Methods in Natural Language Processing

Bridging Languages through Images with Deep Partial Canonical Correlation Analysis

PROCEEDINGS OF THE 56TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL), VOL 1

MMFeat: A Toolkit for Extracting Multi-Modal Features

PROCEEDINGS OF 54TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL-2016): SYSTEM DEMONSTRATIONS

Investigating Inner Properties of Multimodal Representation and Semantic Compositionality with Brain-based Componential Semantics

Visual Denotations for Recognizing Textual Entailment

Investigating Rich Feature Sources for Conceptual Representation Encoding

Workshop on Cognitive Aspects of the Lexicon

Visual Objects As Context: Exploiting Visual Objects for Lexical Entailment


MASS: Masked Sequence to Sequence Pre-training for Language Generation

MPNet: Masked and Permuted Pre-training for Language Understanding

A Comprehensive Survey of AI-Generated Content (AIGC): A History of
  Generative AI from GAN to ChatGPT

Self-Attention Guided Copy Mechanism for Abstractive Summarization

Meeting of the Association for Computational Linguistics

GLGE: A New General Language Generation Evaluation Benchmark

Code-switching pre-training for neural machine translation

Evaluating the Evaluation of Diversity in Natural Language Generation

Friendly Topic Assistant for Transformer Based Abstractive Summarization

PROCEEDINGS OF THE 2020 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING (EMNLP)

XL-AMR: Enabling Cross-Lingual AMR Parsing with Transfer Learning Techniques

Improving Readability for Automatic Speech Recognition Transcription


Package for Heart Rate Variability analysis in Python

Ultra-Short Window Length and Feature Importance Analysis for Cognitive Load Detection from Wearable Sensors

Mental Workload Estimation Based on Physiological Features for Pilot-UAV Teaming Applications

Alignment Between Heart Rate Variability From Fitness Trackers and Perceived Stress: Perspectives From a Large-Scale In Situ Longitudinal Study of Information Workers

Wearable Sensor-Based Detection of Influenza in Presymptomatic and Asymptomatic Individuals

The journal of infectious diseases (Online. University of Chicago Press)/The Journal of infectious diseases

An Improved Subject-Independent Stress Detection Model Applied to Consumer-grade Wearable Devices

Postural Correlates of Pollution Perception

vital_sqi: A Python package for physiological signal quality control


Python energy landscape explorer

Energy landscapes for machine learning

Physical chemistry chemical physics/PCCP. Physical chemistry chemical physics

Turning intractable counting into sampling: Computing the configurational entropy of three-dimensional jammed packings

Numerical test of the Edwards conjecture shows that all packings are equally probable at jamming

Spontaneous Domain Formation in Spherically Confined Elastic Filaments

Superposition-Enhanced Estimation of Optimal Temperature Spacings for Parallel Tempering Simulations

Journal of chemical theory and computation


scale ethereum with snarks

A Survey: Security, Transparency, and Scalability Issues of NFT’s and Its Marketplaces

Enabling Blockchain Services for IoE with Zk-Rollups

Zecale: Reconciling Privacy and Scalability on Ethereum

Accountable Safety for Rollups


Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

The Cymbidium genome reveals the evolution of unique morphological traits

Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

bioRxiv : the preprint server for biology

Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative Phytophthora palmivora

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Genomic analyses of rice bean landraces reveal adaptation and yield related loci to accelerate breeding

Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice

Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis

A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis

Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota)


A library for distributed ML training with PyTorch

CORA: Benchmarks, Baselines, and Metrics as a Platform for Continual Reinforcement Learning Agents

Improving Policy Learning via Language Dynamics Distillation

NetHack is Hard to Hack

Katakomba: Tools and Benchmarks for Data-Driven NetHack

Open RL Benchmark: Comprehensive Tracked Experiments for Reinforcement
  Learning


Genetic multiplexing of barcoded single cell RNA-seq

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

scds: Computational Annotation of Doublets in Single Cell RNA Sequencing Data

Benchmarking UMI-based single cell RNA-sequencing preprocessing workflows

iMyoblasts for ex vivo and in vivo investigations of human myogenesis and disease modeling

Single cell profiling of capillary blood enables out of clinic human immunity studies

Shared acute phase traits in effector and memory human CD8 T cells


Automatically exported from code.google.com/p/figtree

raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater

medRxiv : the preprint server for health sciences

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

V367F Mutation in SARS-CoV-2 Spike RBD Emerging during the Early Transmission Phase Enhances Viral Infectivity through Increased Human ACE2 Receptor Binding Affinity

Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events

The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins

CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates

Triangulation supports agricultural spread of the Transeurasian languages


Empirical Review of Automated Analysis Tools on 47,587 Ethereum Smart Contracts

International Conference on Software Engineering

Designing Secure Ethereum Smart Contracts: A Finite State Machine Based Approach

Empirical Vulnerability Analysis of Automated Smart Contracts Security
  Testing on Blockchains

VeriSolid: Correct-by-Design Smart Contracts for Ethereum

Tool Demonstration: FSolidM for Designing Secure Ethereum Smart Contracts


C++ implementation of the Coherent Point Drift point set registration algorithm.

DeepVCP: An End-to-End Deep Neural Network for Point Cloud Registration

International Conference on Computer Vision

Fast and Robust Iterative Closest Point

Fast and Accurate Point Cloud Registration using Trees of Gaussian Mixtures

Comparison of 3D scan matching techniques for autonomous robot navigation in urban and agricultural environments


Implementation of BERT that could load official pre-trained models for feature extraction and prediction

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Parameter-Efficient Transfer Learning for NLP

WiC-TSV: An Evaluation Benchmark for Target Sense Verification of Words in Context

LISAC FSDM-USMBA Team at SemEval-2020 Task 12: Overcoming AraBERT’s pretrain-finetune discrepancy for Arabic offensive language identification

International Workshop on Semantic Evaluation

NUAA-QMUL at SemEval-2020 Task 8: Utilizing BERT and DenseNet for Internet Meme Emotion Analysis

False News Detection on Social Media

Towards a corpus for credibility assessment in software practitioner blog articles

What can we learn from a Chinese social media used by glaucoma patients?


Trained model files for dlib example programs.

MaskedFace-Net – A dataset of correctly/incorrectly masked face images in the context of COVID-19

Characterizing the Variability in Face Recognition Accuracy Relative to Race

Neonatal pain detection in videos using the iCOPEvid dataset and an ensemble of descriptors extracted from Gaussian of Local Descriptors

Fully Automatic Landmarking of Syndromic 3D Facial Surface Scans Using 2D Images

Improving Memory Utilization in Convolutional Neural Network Accelerators

DIF : Dataset of Perceived Intoxicated Faces for Drunk Person Identification

Distillation of an End-to-End Oracle for Face Verification and Recognition Sensors

Eigenfaces-Based Steganography

Estimating Structural Disparities for Face Models

Regulating Facial Processing Technologies: Tensions Between Legal and Technical Considerations in the Application of Illinois BIPA


TinyEMU based full system cycle-level micro-architectural research simulator for single-core RISC-V systems


Fast Wilcoxon and auROC

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis

Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease

Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target

Presto scales Wilcoxon and auROC analyses to millions of observations

Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

Cell type specific transcriptomic differences in depression show similar patterns between males and females but implicate distinct cell types and genes

Single-cell RNA-seq differential expression tests within a sample should use pseudo-bulk data of pseudo-replicates

Metabolic modeling of single bronchoalveolar macrophages reveals regulators of hyperinflammation in COVID-19

In Situ Spatial Reconstruction of Distinct Normal and Pathological Cell Populations Within the Human Adrenal Gland


An Efficient implementation of TransE and its extended models for Knowledge Representation Learning

A Survey on Knowledge Graphs: Representation, Acquisition, and Applications

IEEE transactions on neural networks and learning systems

DeepPath: A Reinforcement Learning Method for Knowledge Graph Reasoning

OpenKE: An Open Toolkit for Knowledge Embedding

Word-Entity Duet Representations for Document Ranking

SIGIR'17: PROCEEDINGS OF THE 40TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL

Keyword Search on RDF Graphs - A Query Graph Assembly Approach

Learning Representation Mapping for Relation Detection in Knowledge Base Question Answering

Relation path embedding in knowledge graphs

Knowledge Embedding with Geospatial Distance Restriction for Geographic Knowledge Graph Completion

ISPRS international journal of geo-information

Leveraging prior knowledge for protein–protein interaction extraction with memory network

Database : the journal of biological databases and curation

Knowledge-aware attention network for protein-protein interaction extraction


EPFL logic synthesis benchmarks

CONTRA: Area-Constrained Technology Mapping Framework For Memristive Memory Processing Unit

Extending Boolean Methods for Scalable Logic Synthesis

Circuit Minimization with QBF-Based Exact Synthesis

Proceedings of the AAAI Conference on Artificial Intelligence


COMmon Bayesian Optimization

COMBO: An efficient Bayesian optimization library for materials science

Bayesian optimization of chemical composition: A comprehensive framework and its application to
RFe12
-type magnet compounds

Machine learning in materials modeling—fundamentals and the opportunities in 2D materials

Continuous surrogate-based optimization algorithms are well-suited for expensive discrete problems

Communications in computer and information science

Fourier Representations for Black-Box Optimization over Categorical Variables

First-principles investigation of Nd(Fe,M)12 (M = K--Br) and
  Nd(Fe,Cr,Co,Ni,Ge,As)12: Possible enhancers of Curie temperature for NdFe12
  magnetic compounds


Coherence + Recurrent Neural Network +  Convolutional Neural Network

Trends in Integration of Vision and Language Research: A Survey of Tasks, Datasets, and Methods

Expressing an Image Stream with a Sequence of Natural Sentences

Visual Writing Prompts: Character-Grounded Story Generation with Curated Image Sequences


A tool for learning vector representations of words and entities from Wikipedia

Joint Learning of the Embedding of Words and Entities for Named Entity Disambiguation

Neural Entity Linking: A Survey of Models Based on Deep Learning

Novel Entity Discovery from Web Tables

WEB CONFERENCE 2020: PROCEEDINGS OF THE WORLD WIDE WEB CONFERENCE (WWW 2020)

Neural Attentive Bag-of-Entities Model for Text Classification

Representation Learning of Entities and Documents from Knowledge Base Descriptions

Studio Ousia's Quiz Bowl Question Answering System

The Springer series on challenges in machine learning

On the Coherence of Fake News Articles


PyMatching: A Python/C++ library for decoding quantum error correcting codes with minimum-weight perfect matching.

LEMON - an Open Source C++ Graph Template Library

Electronic notes in theoretical computer science

PyMatching: A Python Package for Decoding Quantum Codes with Minimum-Weight Perfect Matching

Fusion Blossom: Fast MWPM Decoders for QEC

Real-time decoding for fault-tolerant quantum computing: progress, challenges and outlook

Partially Fault-tolerant Quantum Computing Architecture with
  Error-corrected Clifford Gates and Space-time Efficient Analog Rotations

High photon-loss threshold quantum computing using GHZ-state
  measurements

Belief propagation as a partial decoder

Deep Quantum Error Correction


NTT-based Fast Lattice library

Survey on Fully Homomorphic Encryption, Theory, and Applications

Hail the Closest Driver on Roads: Privacy-Preserving Ride Matching in Online Ride Hailing Services


Face detection, tracking and clustering in videos

Context-Aware Emotion Recognition Networks

Collaborations on YouTube: From Unsupervised Detection to the Impact on Video and Channel Popularity

DIF : Dataset of Perceived Intoxicated Faces for Drunk Person Identification

DIF : Dataset of Intoxicated Faces for Drunk Person Identification.


A Keras implementation of CapsNet in NIPS2017 paper "Dynamic Routing Between Capsules". Now test error ＝ 0.34%.

Dynamic Routing Between Capsules

CapsuleGAN: Generative Adversarial Capsule Network

Attention routing between capsules

HitNet: a neural network with capsules embedded in a Hit-or-Miss layer, extended with hybrid data augmentation and ghost capsules

Deep medical image analysis with representation learning and neuromorphic computing

MalCaps: A Capsule Network Based Model for the Malware Classification

Towards an effective model for lung disease classification

Multi-lane LBP-Gabor Capsule Network with K-means Routing for Medical Image Analysis

International journal of advanced computer science and applications/International journal of advanced computer science & applications


CLIP (Contrastive Language–Image Pre-training) for Italian

Learning Transferable Visual Models From Natural Language Supervision

Persistent Anti-Muslim Bias in Large Language Models

WIT: Wikipedia-based Image Text Dataset for Multimodal Multilingual Machine Learning

Contrastive Language-Image Pre-training for the Italian Language


Reinforcement learning for energy systems


An out-of-box human parsing representation extractor.

Self-Correction for Human Parsing

Body Part-Based Representation Learning for Occluded Person Re-Identification

High-Fidelity Neural Human Motion Transfer from Monocular Video


Atomistic Line Graph Neural Network https://scholar.google.com/citations?user=9Q-tNnwAAAAJ&hl=en

Atomistic Line Graph Neural Network for improved materials property predictions

Recent advances and applications of deep learning methods in materials science

Unified graph neural network force-field for the periodic table: solid state applications

Examining graph neural networks for crystal structures: Limitations and opportunities for capturing periodicity

Recent progress in the JARVIS infrastructure for next-generation data-driven materials design

LLM-Prop: Predicting Physical And Electronic Properties Of Crystalline
  Solids From Their Text Descriptions


AFINN sentiment analysis in Python

Over a decade of social opinion mining: a systematic review

A Review of Different Approaches for Detecting Emotion from Text

IOP conference series. Materials science and engineering

Subversive Toxicity Detection using Sentiment Information

THIRD WORKSHOP ON ABUSIVE LANGUAGE ONLINE

A systematic review of machine learning techniques for stance detection and its applications

Ternary Twitter Sentiment Classification with Distant Supervision and Sentiment-Specific Word Embeddings

Empirical Methods in Natural Language Processing

Impact of Sentiment Detection to Recognize Toxic and Subversive Online Comments.

Prediction of USA November 2020 Election Results Using Multifactor
  Twitter Data Analysis Method

Lexicon-Enhancement of Embedding-based Approaches Towards the Detection of Abusive Language

Using Sentiment Information for Preemptive Detection of Toxic Comments in Online Conversations

An Enhanced Text Classification to Explore Health based Indian
  Government Policy Tweets


[CVPR 2020] Interpreting the Latent Space of GANs for Semantic Face Editing

A Style-Based Generator Architecture for Generative Adversarial Networks

Progressive Growing of GANs for Improved Quality, Stability, and Variation

InterFaceGAN: Interpreting the Disentangled Face Representation Learned by GANs

FakeSpotter: A Simple yet Robust Baseline for Spotting AI-Synthesized Fake Faces

EditGAN: High-Precision Semantic Image Editing

Countering Malicious DeepFakes: Survey, Battleground, and Horizon

Smoothing the Disentangled Latent Style Space for Unsupervised Image-to-Image Translation

High Resolution Face Editing with Masked GAN Latent Code Optimization

Surrogate Gradient Field for Latent Space Manipulation


TensorFlow2 Reinforcement Learning

Variable Compliance Control for Robotic Peg-in-Hole Assembly: A Deep-Reinforcement-Learning Approach

Learning Force Control for Contact-Rich Manipulation Tasks With Rigid Position-Controlled Robots

International Conference on Robotics and Automation

Position-Agnostic Autonomous Navigation in Vineyards with Deep Reinforcement Learning

2022 IEEE 18th International Conference on Automation Science and Engineering (CASE)

Robotic Imitation of Human Assembly Skills Using Hybrid Trajectory and Force Learning

An Adaptive Imitation Learning Framework for Robotic Complex Contact-Rich Insertion Tasks

OPIRL: Sample Efficient Off-Policy Inverse Reinforcement Learning via Distribution Matching

PIC4rl-gym: a ROS2 modular framework for Robots Autonomous Navigation
  with Deep Reinforcement Learning

Challenges in migrating imperative deep learning programs to graph execution

Proceedings of the 19th International Conference on Mining Software Repositories

On the Guaranteed Almost Equivalence Between Imitation Learning From Observation and Demonstration

Learning Contact-Rich Manipulation Tasks with Rigid Position-Controlled Robots: Learning to Force Control.


An R package to hold and facilitate interaction with natural earth map data :earth_africa:

CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases

Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast

Indian genetic heritage in Southeast Asian populations

Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites

Adulis and the transshipment of baboons during classical antiquity

The Bay of Bengal exposes abundant photosynthetic picoplankton and newfound diversity along salinity-driven gradients.

Genetic Diversity and Structure of a Diverse Population of Picea sitchensis Using Genotyping-by-Sequencing


Automatic White Matter Bundle Segmentation

Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning

An overview of deep learning in medical imaging focusing on MRI

TractSeg - Fast and accurate white matter tract segmentation

Combined tract segmentation and orientation mapping for bundle-specific tractography

Tract orientation mapping for bundle-specific tractography

Prevalence of white matter pathways coming into a single white matter voxel orientation: The bottleneck issue in tractography

Fiber tractography bundle segmentation depends on scanner effects, vendor effects, acquisition resolution, diffusion sampling scheme, diffusion sensitization, and bundle segmentation workflow

Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation

Detecting microstructural deviations in individuals with deep diffusion MRI tractometry

Population-based tract-to-region connectome of the human brain and its hierarchical topology


Official implementation of SEED-LLaMA (ICLR 2024).

InstructPix2Pix: Learning to Follow Image Editing Instructions

Multimodal C4: An Open, Billion-scale Corpus of Images Interleaved with
  Text

Planting a SEED of Vision in Large Language Model

Making LLaMA SEE and Draw with SEED Tokenizer


A small library to modify all page-table levels of all processes from user space for x86_64 and ARMv8.

JackHammer: Efficient Rowhammer on Heterogeneous FPGA-CPU Platforms

Understanding TEE Containers, Easy to Use? Hard to Trust

Domain Page-Table Isolation

Layered Binary Templating: Efficient Detection of Compiler- and
  Linker-introduced Leakage


⚡ zeus: Lightning Fast MCMC ⚡

zeus: a PYTHON implementation of ensemble slice sampling for efficient Bayesian parameter inference

Monthly notices of the Royal Astronomical Society

Ensemble slice sampling

Impact of relativistic effects on the primordial non-Gaussianity signature in the large-scale clustering of quasars

Monthly Notices of the Royal Astronomical Society

Detecting the power spectrum turnover with H i intensity mapping

Measuring line-of-sight shear with Einstein rings: a proof of concept


Scala 2 bug reports only. Please, no questions — proper bug reports only.

Resolution as Intersection Subtyping via Modus Ponens

Proceedings of the ACM on programming languages

Type-Preserving Compilation of Class-Based Languages

Scala Implicits are Everywhere: A large-scale study of the use of
  Implicits in the wild

Auto-generated Spies Increase Test Maintainability


Fast genome analysis from unassembled short reads

Highly contiguous assemblies of 101 drosophilid genomes

Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution

Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.

Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome

DNA research : an international journal for rapid publication of reports on genes and genomes

Integrated global analysis in spider flowers illuminates features underlying the evolution and maintenance of C4 photosynthesis

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms


Snips Voice Platform: an embedded Spoken Language Understanding system for private-by-design voice interfaces

Zero-shot User Intent Detection via Capsule Neural Networks

CG-BERT: Conditional Text Generation with BERT for Generalized Few-shot Intent Detection

A post-processing method for detecting unknown intent of dialogue system via pre-trained deep neural network classifier

Composed Variational Natural Language Generation for Few-shot Intents

LINGUIST: Language Model Instruction Tuning to Generate Annotated
  Utterances for Intent Classification and Slot Tagging

Energy-based Unknown Intent Detection with Data Manipulation

Character-level White-Box Adversarial Attacks against Transformers via Attachable Subwords Substitution

Bi-directional Joint Neural Networks for Intent Classification and Slot Filling

Conditioned Text Generation with Transfer for Closed-Domain Dialogue Systems


geometric ray tracing for optical systems

Poke: An open-source ray-based physical optics platform

Hybrid propagation physics for the design and modeling of astronomical observatories: a coronagraphic example


EMNLP 2018: RESIDE: Improving Distantly-Supervised Neural Relation Extraction using Side Information

Improving Distantly Supervised Relation Extraction using Word and Entity Based Attention

Distantly-Supervised Long-Tailed Relation Extraction Using Constraint Graphs

Distantly-Supervised Neural Relation Extraction with Side Information using BERT

International Joint Conference on Neural Network

A Question-answering Based Framework for Relation Extraction Validation


PyTorch Framework for Developing Memory Efficient Deep Invertible Networks

The Reversible Residual Network: Backpropagation Without Storing Activations

Reversible GANs for Memory-efficient Image-to-Image Translation

iUNets: Fully invertible U-Nets with Learnable Up- and Downsampling


GUI for marking bounded boxes of objects in images for training neural network Yolo v3 and v2

Deep Learning for Retail Product Recognition: Challenges and Techniques

Computational intelligence and neuroscience

MOR-UAV: A Benchmark Dataset and Baselines for Moving Object Recognition in UAV Videos

Deep Learning-Based Object Detection System for Identifying Weeds Using UAS Imagery

AN APPROACH FOR IMAGE ANNOTATION AUTOMATIZATION FOR ARTIFICIAL INTELLIGENCE MODELS LEARNING

Адаптивні системи автоматичного управління

Design and Implementation of a Hydroponic Strawberry Monitoring and Harvesting Timing Information Supporting System Based on Nano AI-Cloud and IoT-Edge

DeepSperm: A robust and real-time bull sperm-cell detection in densely populated semen videos

CarFree: Hassle-Free Object Detection Dataset Generation Using Carla Autonomous Driving Simulator

Perspective-Corrected Spatial Referring Expression Generation for Human–Robot Interaction

Vineyard Gap Detection by Convolutional Neural Networks Fed by Multi-Spectral Images

Quevedo: Annotation and Processing of Graphical Languages

LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION


V2E: From video frames to DVS events

v2e: From Video Frames to Realistic DVS Events

V2E: From video frames to realistic DVS event camera streams.

Event Camera Simulator Improvements via Characterized Parameters


Documentation for Ross Wightman's timm image model library

Inconspicuous Adversarial Patches for Fooling Image Recognition Systems on Mobile Devices

CoroTrans-CL: A Novel Transformer-Based Continual Deep Learning Model for Image Recognition of Coronavirus Infections

DISCOVER: 2-D Multiview Summarization of Optical Coherence Tomography
  Angiography for Automatic Diabetic Retinopathy Diagnosis


SiMon -- Simulation Monitor

Stability of multiplanetary systems in star clusters

SiMon: Simulation Monitor for Computational Astrophysics

Publications of the Astronomical Society of the Pacific

Inside-Out Planet Formation: VI. Oligarchic Coagulation of Planetesimals from a Pebble Ring?

DeepGalaxy: Deducing the Properties of Galaxy Mergers from Images Using Deep Neural Networks

PROCEEDINGS OF 2020 IEEE/ACM 5TH WORKSHOP ON DEEP LEARNING ON SUPERCOMPUTERS (DLS 2020)


GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop.

Montblanc: GPU accelerated Radio Interferometer Measurement Equations in support of Bayesian Inference for Radio Observations

kern

Shakespeare and National Identity : A Dictionary

Resolving the blazar CGRaBS J0809+5341 in the presence of telescope systematics

Radio galaxy shape measurement with Hamiltonian Monte Carlo in the visibility domain

Radio galaxy detection in the visibility domain


A GenePattern module for running the ssGSEA method

Dissecting the DNA binding landscape and gene regulatory network of p63 and p53

Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress


The X Toolkit

Deciphering the mechanisms of developmental disorders: phenotype analysis of embryos from mutant mouse lines

Reusable Client-Side JavaScript Modules for Immersive Web-Based Real-Time Collaborative Neuroimage Visualization

brainR: Interactive 3 and 4D Images of High Resolution Neuroimage Data

Modern Scientific Visualizations on the Web

Exploring the Human Connectome Topology in Group Studies

From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research

N-Tools-Browser: Web-Based Visualization of Electrocorticography Data for Epilepsy Surgery

A Semantic Cross-Species Derived Data Management Application


Experiments towards neural network theorem proving

HOList: An Environment for Machine Learning of Higher-Order Theorem Proving

HolStep: A Machine Learning Dataset for Higher-order Logic Theorem Proving

Learning to Represent Programs with Property Signatures


LibAUC: A Deep Learning Library for X-Risk Optimization

Large-scale Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification

DORA: Exploring Outlier Representations in Deep Neural Networks

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining


MedicalGPT: Training Your Own Medical GPT Model with ChatGPT Training Pipeline. 训练医疗大模型，实现了包括增量预训练(PT)、有监督微调(SFT)、RLHF、DPO、ORPO。

Direct Preference Optimization: Your Language Model is Secretly a Reward
  Model

Survey on Factuality in Large Language Models: Knowledge, Retrieval and
  Domain-Specificity

TrustLLM: Trustworthiness in Large Language Models

DISC-MedLLM: Bridging General Large Language Models and Real-World
  Medical Consultation

HuatuoGPT-II, One-stage Training for Medical Adaption of LLMs

Datasets for Large Language Models: A Comprehensive Survey


A Python version of KinMS (github.com/TimothyADavis/KinMS)

The MBHBM* Project -- I: Measurement of the Central Black Hole Mass in
  Dwarf Galaxy NGC 3504 Using Molecular Gas Kinematics

Being KLEVER at cosmic noon: Ionized gas outflows are inconspicuous in low-mass star-forming galaxies but prominent in massive AGN hosts

WISDOM project – VIII. Multiscale feedback cycles in the brightest cluster galaxy NGC 0708

Evidence of Wind Signatures in the Gas Velocity Profiles of Red Geysers

The Complex Gaseous and Stellar Environments of the Nearby Dual Active Galactic Nucleus Mrk 739

Using machine learning to study the kinematics of cold gas in galaxies

A self-supervised, physics-aware, Bayesian neural network architecture for modelling galaxy emission-line kinematics

The ALMaQUEST Survey XIV: do radial molecular gas flows affect the
  star-forming ability of barred galaxies?


Library of released PBPK substance models and evaluation reports

Pharmacokinetics of the CYP3A4 and CYP2B6 Inducer Carbamazepine and Its Drug–Drug Interaction Potential: A Physiologically Based Pharmacokinetic Modeling Approach

A Physiologically Based Pharmacokinetic and Pharmacodynamic Model of the CYP3A4 Substrate Felodipine for Drug–Drug Interaction Modeling

Development of a Physiologically Based Pharmacokinetic Model for Tegoprazan: Application for the Prediction of Drug–Drug Interactions with CYP3A4 Perpetrators

A Physiologically Based Pharmacokinetic Model of Ketoconazole and Its Metabolites as Drug–Drug Interaction Perpetrators


Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel format and then simulated using the Netflux graphical interface. No computer programming is required. Netflux is written in MATLAB, with binary versions available for Windows and MacOS.

Predictive model identifies key network regulators of cardiomyocyte mechano-signaling

Network Analysis Reveals a Distinct Axis of Macrophage Activation in Response to Conflicting Inflammatory Cues

The journal of immunology/The Journal of immunology

Roles of mTOR in thoracic aortopathy understood by complex intracellular signaling interactions

Multiscale model of heart growth during pregnancy: integrating mechanical and hormonal signaling

Computational Screen for Sex-Specific Drug Effects in a Cardiac Fibroblast Network Model

bioRxiv : the preprint server for biology

Vascular smooth muscle cell mechanotransduction through serum and glucocorticoid inducible kinase-1 promotes interleukin-6 production and macrophage accumulation in murine hypertension


iCount, protein-RNA interaction analytics

Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition

G-tract RNA removes Polycomb repressive complex 2 from genes

FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA

SRSF3 and SRSF7 modulate 3′UTR length through suppression or activation of proximal polyadenylation sites and regulation of CFIm levels

CDK11 is required for transcription of replication-dependent histone genes

Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock

clipplotr - a comparative visualisation and analysis tool for CLIP data

ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins

Loss of TDP-43 causes ectopic endothelial sprouting and migration defects through increased fibronectin, vcam 1 and integrin α4/β1

Frontiers in cell and developmental biology

U1A is a positive regulator of the expression of heterologous and cellular genes involved in cell proliferation and migration


Statistical fine-mapping pipeline in FinnGen

FinnGen: Unique genetic insights from combining isolated population and national health register data

Insights from complex trait fine-mapping across diverse populations

Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics

Genetic Risk Factors Associated With Preeclampsia and Hypertensive Disorders of Pregnancy


ChemEx is an analysis program for chemical exchange detected by NMR.

Measles virus nucleo- and phosphoproteins form liquid-like phase-separated compartments that promote nucleocapsid assembly

Thermal fluctuations of immature SOD1 lead to separate folding and misfolding pathways

Structural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space

Conserved conformational selection mechanism of Hsp70 chaperone-substrate interactions

How Detergent Impacts Membrane Proteins: Atomic-Level Views of Mitochondrial Carriers in Dodecylphosphocholine

The journal of physical chemistry letters

Visualizing protein breathing motions associated with aromatic ring flipping

Interleukin-2 druggability is modulated by global conformational transitions controlled by a helical capping switch

Structural basis and mechanism of the unfolding-induced activation of HdeA, a bacterial acid response chaperone

Chemical shift prediction of RNA imino groups: application toward characterizing RNA excited states

Correlating histone acetylation with nucleosome core particle dynamics and function

Proceedings of the National Academy of Sciences of the United States of America


MiniFE Finite Element Mini-Application

Kokkos 3: Programming Model Extensions for the Exascale Era

IEEE transactions on parallel and distributed systems

Fine-Grained Scheduling for Containerized HPC Workloads in Kubernetes
  Clusters


R Wrapper for Tetrad Library

Large-scale empirical validation of Bayesian Network structure learning algorithms with noisy data

Bayesian network structure learning with causal effects in the presence of latent variables

Hybrid Bayesian network discovery with latent variables by scoring multiple interventions

Discovery and density estimation of latent confounders in Bayesian
  networks with evidence lower bound


A Baseline for Multilingual Sentiment Analysis

An Automated Text Categorization Framework based on Hyperparameter Optimization

A Simple Approach to Multilingual Polarity Classification in Twitter

EvoMSA: A Multilingual Evolutionary Approach for Sentiment Analysis

IEEE computational intelligence magazine

INGEOTEC at SemEval 2017 Task 4: A B4MSA Ensemble based on Genetic Programming for Twitter Sentiment Analysis

Meeting of the Association for Computational Linguistics

INGEOTEC at SemEval-2018 Task 1: EvoMSA and μTC for Sentiment Analysis

North American Chapter of the Association for Computational Linguistics


Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection

Bayesian model comparison for simulation-based inference

Machine learning assisted Bayesian model comparison: learnt harmonic mean estimator

Learned harmonic mean estimation of the marginal likelihood with
  normalizing flows


Code for plotting bounds on the abundance of primordial black holes (PBHs)

Primordial black holes as a dark matter candidate

Journal of physics. G, Nuclear and particle physics

Eliminating the LIGO bounds on primordial black hole dark matter

Primordial black holes from the perturbations in the inflaton potential in peak theory

21 cm Forest Constraints on Primordial Black Holes

Dancing in the dark: detecting a population of distant primordial black holes

Journal of cosmology and astroparticle physics

bradkav/PBHbounds: Release version

Primordial black hole dark matter from catastrogenesis with unstable pseudo-Goldstone bosons

Signatures of primordial black hole dark matter at DUNE and THEIA

Primordial black holes from Higgs inflation with a Gauss-Bonnet coupling

Stellar prospects for FRB gravitational lensing


SED-fitting code for AGN and galaxies from a MCMC approach

AGNfitter: A BAYESIAN MCMC APPROACH TO FITTING SPECTRAL ENERGY DISTRIBUTIONS OF AGNs

Multi-wavelength properties of Type 1 and Type 2 AGN Host Galaxies in the Chandra-COSMOS Legacy Survey

A Spectroscopic Follow-up Program of Very Massive Galaxies at 3 < z < 4: Confirmation of Spectroscopic Redshifts, and a High Fraction of Powerful AGNs

Evidence of underdeveloped torus and broad-line region of weak emission line quasars based on their spectral energy distribution


Small collection of tools for performing quality control on coronavirus sequencing data and genomes

Precision Response to the Rise of the SARS-CoV-2 B.1.1.7 Variant of Concern by Combining Novel PCR Assays and Genome Sequencing for Rapid Variant Detection and Surveillance

Immunogenicity of convalescent and vaccinated sera against clinical isolates of ancestral SARS-CoV-2, Beta, Delta, and Omicron variants

Adverse Outcomes Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variant B.1.351 Infection in Vaccinated Residents of a Long-Term Care Home, Ontario, Canada

Clinical infectious diseases/Clinical infectious diseases (Online. University of Chicago. Press)

Factors contributing to a coronavirus disease 2019 (COVID-19) outbreak on a mixed medical-surgical unit in a Canadian acute-care hospital

Antimicrobial stewardship & healthcare epidemiology : ASHE

Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole-genome sequencing

The Journal of hospital infection/Journal of hospital infection


Fluid-Structure-Interaction / MHD Research Code. Relies on Fourier transforms for derivatives and the volume penalization method to include obstacles.

FluSI: A novel parallel simulation tool for flapping insect flight using
  a Fourier method with volume penalization

The dynamics of passive feathering rotation in hovering flight of bumblebees

Impact of turbulence on flying insects in tethered and free flight: High-resolution numerical experiments

Helical vortices generated by flapping wings of bumblebees

A mass-spring fluid-structure interaction solver: Application to flexible revolving wings

An experimental data-driven mass-spring model of flexible Calliphora wings

Fluid-structure interaction using volume penalization and mass-spring models with application to flapping bumblebee flight


A fast parallel implementation of RNN Transducer.

Speech Recognition with Deep Recurrent Neural Networks

Sequence Transduction with Recurrent Neural Networks

A New Training Pipeline for an Improved Neural Transducer

Librispeech Transducer Model with Internal Language Model Prior Correction


Thot toolkit for statistical machine translation

The New Thot Toolkit for Fully-Automatic and Interactive Statistical Machine Translation

Conference of the European Chapter of the Association for Computational Linguistics

Online Learning for Statistical Machine Translation

International Conference on Computational Logic

Online Automatic Post-editing for MT in a Multi-Domain Translation Environment

Automatic Post-Editing for Machine Translation

Instance Selection for Online Automatic Post-Editing in a multi-domain scenario

Conference of the Association for Machine Translation in the Americas


Package for processing and analyzing glycans and their role in biology.

Deep-Learning Resources for Studying Glycan-Mediated Host-Microbe Interactions

Glycowork: A Python package for glycan data science and machine learning

The Role of Fucose-Containing Glycan Motifs Across Taxonomic Kingdoms


Python API for the WRF-Hydro model


A trajectory optimization library for Matlab

Toward an Expressive Bipedal Robot: Variable Gait Synthesis and Validation in a Planar Model

International journal of social robotics

Robust Nonlinear Tracking Control with Exponential Convergence Using Contraction Metrics and Disturbance Estimation


'ggplot2' Based Publication Ready Plots

High-Resolution Transcriptomic Profiling of the Heart During Chronic Stress Reveals Cellular Drivers of Cardiac Fibrosis and Hypertrophy

Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain

Single-cell transcriptomic atlas of primate cardiopulmonary aging

In vitro interaction network of a synthetic gut bacterial community

MyelinJ: an ImageJ macro for high throughput analysis of myelinating cultures

Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L.

International journal of molecular sciences

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment: a randomized trial of preterm infants

A Link Between Mitochondrial Dysfunction and the Immune Microenvironment of Salivary Glands in Primary Sjogren’s Syndrome

In vitro Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition

Osteocytes regulate organismal senescence of bone and bone marrow


SemEval2024-task8: Multidomain, Multimodel and Multilingual Machine-Generated Text Detection

M4: Multi-generator, Multi-domain, and Multi-lingual Black-Box
  Machine-Generated Text Detection


The Coq Effective Algebra Library [maintainers=@CohenCyril,@proux01]

QWIRE Practice: Formal Verification of Quantum Circuits in Coq

Refinements for Free!

A Refinement-Based Approach to Computational Algebra in Coq

Formalized linear algebra over Elementary Divisor Rings in Coq

Symbolic Reasoning About Quantum Circuits in Coq

A Coq Formalization of Finitely Presented Modules


Interactive Studio for Explanatory Model Analysis

The Grammar of Interactive Explanatory Model Analysis


SlideRunner is a tool for massive cell annotations in whole slide images

SlideRunner - A Tool for Massive Cell Annotations in Whole Slide Images

CytoBrowser: a browser-based collaborative annotation platform for whole slide images

Whole Slide Image Quality in Digital Pathology: Review and Perspectives

A Cytopathologist Eye Assistant for Cell Screening


Supplementary package for "Spatio-Temporal Statistics with R" by C.K. Wikle, A. Zammit-Mangion, and N. Cressie

Deep integro-difference equation models for spatio-temporal forecasting

Statistical Deep Learning for Spatial and Spatio-Temporal Data


GuessWhat?! Baselines

GuessWhat?! Visual object discovery through multi-modal dialogue

End-to-end optimization of goal-driven and visually grounded dialogue systems

Trends in Integration of Vision and Language Research: A Survey of Tasks, Datasets, and Methods

Beyond task success: A closer look at jointly learning to see, ask, and GuessWhat

A Survey on Deep Learning Toolkits and Libraries for Intelligent User Interfaces

Ask No More: Deciding when to guess in referential visual dialogue


Bayesian Convolutional Neural Network with Variational Inference based on Bayes by Backprop in PyTorch.

Weight Uncertainty in Neural Networks

Variational Dropout and the Local Reparameterization Trick

A Comprehensive guide to Bayesian Convolutional Neural Network with Variational Inference

Uncertainty Estimations by Softplus normalization in Bayesian Convolutional Neural Networks with Variational Inference

ProbAct: A Probabilistic Activation Function for Deep Neural Networks


Language model fine-tuning on NER with an easy interface and cross-domain evaluation. "T-NER: An All-Round Python Library for Transformer-based Named Entity Recognition, EACL 2021"

EACL 2021: THE 16TH CONFERENCE OF THE EUROPEAN CHAPTER OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS: PROCEEDINGS OF THE SYSTEM DEMONSTRATIONS

Named Entity Recognition in Twitter: A Dataset and Analysis on
  Short-Term Temporal Shifts

Location reference recognition from texts: A survey and comparison


MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids

Zenodo (CERN European Organization for Nuclear Research)

Epidemiology of Plasmids in Escherichia coli and Klebsiella pneumoniae with Acquired Extended Spectrum Beta-Lactamase Genes Isolated from Chronic Wounds in Ghana

Comparative Genomic Analysis of Enterococci across Sectors of the One Health Continuum

Dissection of Highly Prevalent qnrS1-Carrying IncX Plasmid Types in Commensal Escherichia coli from German Food and Livestock

Molecular Evolution and Genomic Insights into Community-Acquired Methicillin-Resistant Staphylococcus aureus Sequence Type 88


FUNGuild: parsing OTUs into functional guilds

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System

Cryptic Risks to Forest Biosecurity Associated with the Global Movement of Commercial Seed

Soil depth and grassland origin cooperatively shape microbial community co‐occurrence and function

Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel

Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates

Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions

Microbiota dysbiosis in honeybee (Apis mellifera L.) larvae infected with brood diseases and foraging bees exposed to agrochemicals

Seasonal dynamics of microbial diversity in the rhizosphere of Ulmus pumila L. var. sabulosa in a steppe desert area of Northern China

Diversity and Communities of Fungal Endophytes from Four Pinus Species in Korea

Application of Manure Rather Than Plant-Origin Organic Fertilizers Alters the Fungal Community in Continuous Cropping Tobacco Soil


Hardcaml is an OCaml library for designing hardware.

Predictable Accelerator Design with Time-Sensitive Affine Types

Modular Hardware Design with Timeline Types

Proceedings of the ACM on programming languages


Phylogenetic orthology inference for comparative genomics

OrthoFinder: phylogenetic orthology inference for comparative genomics

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia

PRMD: an integrated database for plant RNA modifications

A super pan-genomic landscape of rice

A High-Quality Genome Sequence of Model Legume Lotus japonicus (MG-20) Provides Insights into the Evolution of Root Nodule Symbiosis

A resource for improved predictions of Trypanosoma and Leishmania protein three-dimensional structure

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

bioRxiv : the preprint server for biology

Pan‐genome: A promising resource for noncoding RNA discovery in plants

Phosphoregulation of DSB-1 mediates control of meiotic double-strand break activity

Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite’s Biosynthesis and Medicinal Application


Kinematic and static rupture forward modeling and inversion code

Sub- and super-shear ruptures during the 2023 Mw 7.8 and Mw 7.6 earthquake doublet in SE Türkiye

Microzoning Tsunami Hazard by Combining Flow Depths and Arrival Times

Source Model and Characteristics of the 27 July 2022 MW 7.0 Northwestern Luzon Earthquake, Philippines

Rupture Models of the 2016 Central Italy Earthquake Sequence from Joint Inversion of Strong-Motion and InSAR Datasets: Implications for Fault Behavior


PyHessian is a Pytorch library for second-order based analysis and training of Neural Networks

PyHessian: Neural Networks Through the Lens of the Hessian

HAWQ-V2: Hessian Aware trace-Weighted Quantization of Neural Networks

Hessian-based Analysis of Large Batch Training and Robustness to Adversaries

Handcrafted Backdoors in Deep Neural Networks

Eigencurve: Optimal Learning Rate Schedule for SGD on Quadratic Objectives with Skewed Hessian Spectrums


ROS network stack: Topic/service transport over unreliable network connections

NimbRo Rescue: Solving Disaster-Response Tasks through Mobile Manipulation Robot Momaro

CERBERUS: Autonomous Legged and Aerial Robotic Exploration in the Tunnel and Urban Circuits of the DARPA Subterranean Challenge

Multi-Agent Autonomy: Advancements and Challenges in Subterranean Exploration

Team NimbRo at MBZIRC 2017: Fast landing on a moving target and treasure hunting with a team of micro aerial vehicles

Supervised Autonomy for Exploration and Mobile Manipulation in Rough Terrain with a Centaur-Like Robot

International Conference on Intelligent Autonomous Systems

Online Visual Robot Tracking and Identification using Deep LSTM Networks

Team CERBERUS Wins the DARPA Subterranean Challenge: Technical Overview
  and Lessons Learned

Robust Immersive Telepresence and Mobile Telemanipulation: NimbRo wins
  ANA Avatar XPRIZE Finals

Bimanual telemanipulation with force and haptic feedback through an anthropomorphic avatar system

MRS Drone: A Modular Platform for Real-World Deployment of Aerial Multi-Robot Systems


XVERSE-13B: A multilingual large language model developed by XVERSE Technology Inc.

Llama 2: Open Foundation and Fine-Tuned Chat Models

Measuring Massive Multitask Language Understanding

AGIEval: A Human-Centric Benchmark for Evaluating Foundation Models

Data Engineering for Scaling Language Models to 128K Context

Ziya2: Data-centric Learning is All LLMs Need

Shai: A large language model for asset management

Orion-14B: Open-source Multilingual Large Language Models


Softlearning is a reinforcement learning framework for training maximum entropy policies in continuous domains. Includes the official implementation of the Soft Actor-Critic algorithm.

Soft Actor-Critic Algorithms and Applications

Better Exploration with Optimistic Actor-Critic

DisCor: Corrective Feedback in Reinforcement Learning via Distribution Correction

A Unified Bellman Optimality Principle Combining Reward Maximization and Empowerment

CKNet: A Convolutional Neural Network Based on Koopman Operator for
  Modeling Latent Dynamics from Pixels

Empirical Design in Reinforcement Learning

Distillation Policy Optimization


TAPA is a dataflow HLS framework that features fast compilation, expressive programming model and generates high-frequency FPGA accelerators.

FPGA - AutoBridge: Coupling Coarse-Grained Floorplanning and Pipelining for High-Frequency HLS Design on Multi-Die FPGAs

Symposium on Field Programmable Gate Arrays

Extending High-Level Synthesis for Task-Parallel Programs

TAPA: A Scalable Task-parallel Dataflow Programming Framework for Modern FPGAs with Co-optimization of HLS and Physical Design